TCONS_00003235-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003235-protein
Unique Name	TCONS_00003235-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	278

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003235-protein ID=TCONS_00003235-protein|Name=TCONS_00003235-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MDPNHVSSVIKEYRVTLPMSVEEYRIGQLYGVAEASKNETGRGEGIEVVT
NEPREEVIPGERSGATMKCQYTYKIFHLSSKVPTFIRSLAPTGSLEIHEQ
SWNAYPYCRTVYSNHYMKDRFHIVIETRHEPGTGDIDNVHNLPANQLNKR
VVEKIDIVNDPCRQVDDKEEEDPTKFKSEKTGRGPIQGSGWEQTQDPVMT
CYKLYHIEFQWFGLQGKVESVIVKTVRRLLFNFNRQMFCWIDKWHSMTIE
DIRALEDQTKEDLGNMRSNGEVRGMRER

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001795	XLOC_001795	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003235	TCONS_00003235	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001666	PI_transfer
IPR023393	START-like_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001666	Phosphatidylinositol transfer protein	PRINTS	PR00391	PITRANSFER	coord: 23..42 score: 64.17 coord: 125..140 score: 51.04 coord: 229..248 score: 46.67 coord: 209..224 score: 51.56
IPR001666	Phosphatidylinositol transfer protein	PFAM	PF02121	IP_trans	coord: 9..261 e-value: 1.3E-107 score: 358.8
IPR023393	START-like domain	GENE3D	3.30.530.20		coord: 8..278 e-value: 2.8E-114 score: 380.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..190
None	No IPR available	SUPERFAMILY	55961	Bet v1-like	coord: 9..276

Blast

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BLAST of TCONS_00003235-protein vs. Swiss-Prot (Human)
Match: PIPNA (Phosphatidylinositol transfer protein alpha isoform OS=Homo sapiens GN=PITPNA PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 3.705e-96
Identity = 148/273 (54.21%), Postives = 185/273 (67.77%), Query Frame = 0

Query:    9 VIKEYRVTLPMSVEEYRIGQLYGVAEASKNETGRGEGIEVVTNEPREEVIPGERSGATMKCQYTYKIFHLSSKVPTFIRSLAPTGSLEIHEQSWNAYPYCRTVYSNHYMKDRFHIVIETRHEPGTGDIDNVHNLPANQLNKRVVEKIDIVN-DPCRQVDDKEEEDPTKFKSEKTGRGPIQGSGWE-----QTQDPVMTCYKLYHIEFQWFGLQGKVESVIVKTVRRLLFNFNRQMFCWIDKWHSMTIEDIRALEDQTKEDLGNMRSNGEVRGM 275
            ++KEYRV LP+SV+EY++GQLY VAEASKNETG GEG+EV+ NEP E+   GE      K QYT+KI+HL SKVPTF+R LAP G+L IHE++WNAYPYCRTV +N YMK+ F I IET H+P  G  +NVH L            IDI +       D K EEDP KFKS KTGRGP+ G  W+     Q   P M  YKL  ++F+W+GLQ KVE+ I K  RRL  NF+RQ+FCW+DKW  +T++DIR +E++TK  L  MR    V+GM
Sbjct:    3 LLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEK--DGE------KGQYTHKIYHLQSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAEEDPAKFKSIKTGRGPL-GPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQERRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGM 266

The following BLAST results are available for this feature:

BLAST of TCONS_00003235-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003235-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PIPNA	3.705e-96	54.21	Phosphatidylinositol transfer protein alpha isofor...	[more]

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TCONS_00003235-protein (polypeptide) - C. hemisphaerica