TCONS_00003226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003226
Unique NameTCONS_00003226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003226 ID=TCONS_00003226|Name=TCONS_00003226|organism=Clytia hemisphaerica|type=transcript|length=252bp
GTTTTTCAGAAGACGAAGAAAGTCAGAGAAAGGAACCGTTAATGAAATGC
TCAAGTCTGGTAAATAAGAACCCTCGCTGAACGGCATATGTATGATTGAC
AGTCCTTGTATTGTATTGATTATAATAAATCTTTCCGTTCGAACTACTAT
TAAATGTCATTTAATGCAAGCATGTGAGTAATATGCTACGGATATAAGTA
AGCGTACGAGTATGTGCTGTCTTCaaaggtgatttttttattttaatccc
AC
Run BLAST on NCBI

transcript from alignment at sc0000025:388697..388948

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003226 ID=TCONS_00003226|Name=TCONS_00003226|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000025:388697..388948 (Clytia hemisphaerica)
GTgggattaaaataaaaaaatcacctttGAAGACAGCACATACTCGTACG
CTTACTTATATCCGTAGCATATTACTCACATGCTTGCATTAAATGACATT
TAATAGTAGTTCGAACGGAAAGATTTATTATAATCAATACAATACAAGGA
CTGTCAATCATACATATGCCGTTCAGCGAGGGTTCTTATTTACCAGACTT
GAGCATTTCATTAACGGTTCCTTTCTCTGACTTTCTTCGTCTTCTGAAAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001786XLOC_001786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003226-exon-sc0000025-1491911889:388697..388948TCONS_00003226-exon-sc0000025-1491911889:388697..388948Clytia hemisphaericaexon
TCONS_00003226-exon-sc0000025-1510915933:388697..388948TCONS_00003226-exon-sc0000025-1510915933:388697..388948Clytia hemisphaericaexon
TCONS_00003226-exon-sc0000025-1575043694:388697..388948TCONS_00003226-exon-sc0000025-1575043694:388697..388948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:388697..388948 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48567	0	1.68215	0	1.00175	0	0	0	0	0	0	0	18.1684	8.72203	0.421805	0.905323	0	1.7147	51.3271	30.5735	0	0	3.40687	0	0	0	0	0	0.824487	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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