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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003196 ID=TCONS_00003196|Name=TCONS_00003196|organism=Clytia hemisphaerica|type=transcript|length=664bp
aaaataatcattttgagtaattttgaaGTGTATTTAATACTACAGGTTTC
CCTTTATTTAAGCTGTTTAAAATCTACAagtaaaataacattttctattg
gaaaataaaatctaaaaggtAATTTGAAATTGATTAAAATAGTTTGAGTA
TATAATTATGATGGCAAAATTcgaaaatacaaatttttagTCGAAACAAA
TTTTTAGTCGAAGGGAATATTGATCTCGTAAATTCTAAGTCATTATCAGC
TCAAatattcaatcctttttgcACAATCTTCAGATTTTTCCGATCATGAG
ATCCGTTAGACCTTGtcagaataaaaatattttatattgaTCGTAATATA
TTCTGATGTTGTAATCGTTCCATTACATTCGGTTTCTCAGTTAGGCCAGT
TCCAGCCATTATGAAAGAAAACTTCCGAGTTGCGTAAAAATaatcgtttt
ttcaaaatttgtatttttccaTAATGGCATAATGGTTGACTTTTATTTTG
AGAGCAAAGGCTATAACCTCTTCTACTTCAATAGTTCTCCACTTATTTGC
TGGAATGGCTTCATCCATTGCTTTTAAAGCTTACAGTCCGAATCATTAAC
AGCTTTCTCGTAAACAATTTTCTCAAGCATCAGCCATCTCCATCCCAGTA
TTGGTCTTGCTACT Run BLAST on NCBI transcript from alignment at sc0000025:595864..598756- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003196 ID=TCONS_00003196|Name=TCONS_00003196|organism=Clytia hemisphaerica|type=transcript|length=2893bp|location=Sequence derived from alignment at sc0000025:595864..598756- (Clytia hemisphaerica)
AAAATAATCATTTTGAGTAATTTTGAAGTGTATTTAATACTACAGGTTTC
CCTTTATTTAAGCTGTTTAAAATCTACAAGTAAAATAACATTTTCTATTG
GAAAATAAAATCTAAAAGGTAATTTGAAATTGATTAAAATAGTTTGAGTA
TATAATTATGATGGCAAAATTCGAAAATACAAATTTTTAGTCGAAACAAA
TTTTTAGTCGAAGGGAATATTGATCTCGTAAATTCTAAGTCATTATCAGC
TCAAATATTCAATCCTTTTTGCACAATCTTCAGATTTTTCCGATCATGAG
ATCCGTTAGACCTTGTCAGAATAAAAATATTTTATATTGATCGTAATATA
TTCTGATGTTGTAATCGTTCCATTACATTCGGTTTCTCAGTTAGGCCAGT
TTCAGCCATTACGAAAGAAAACTTCCGAGTTGCGTAAAAATAATCGTTTT
TCAAAATTTGAATTTTCCATAATGGCATAATGGTTGACTTTTGTTTTGAG
AGCAAAGGCTATAACCTCTTGTACTTCAATAGTTCTCCACTTATTTGCTG
GAATGGCTTCATCCATTGCCTTTAAAGCTTACAGTCCGAATCATTAACAG
CTTTCTCGTAAACAATTTTCTCAAGCATCAGCCATCTCCATCCCAGTATT
GGTCTTGCTACTTTCGACACCACCCATCACTTTCCTATTGAATTTCTTGA
TCTGTTTCAAAATCTTTGGTTGTAGAAAGATGTAACAAAGTGGATCTGAT
ATAATGTTCAAAACATTGACACCGATAAGTCCTACGATAACCAACAATCG
GTCTTCCCCTAACTCCACATGGTTCACAATGATACTTGGTACATAATTGA
ACAAGAAAAAAGTCATAACAATAGCAAAAGGGAGAGCAAATTTACGTAAC
ATCCTGTACCGGTTGTTGGTTGACCCAGTATTGTTACCACCGTGTGCCAA
CCGAGAAGTGTACAGGACTTTGCNCTGCTTTTCGAACCAATCGTTTTACT
AACATTATATGTACCTCCAAATAAATGAAAATAATCATTTTGAGTAATTT
TGAAGTGTATTTAATACTACAGGTTTCCCTTTATTTAAGCTGTTTAAAAT
CTACAAGTAAAATAACATTTTCTATTGGAAAATAAAATCTAAAAGGTAAT
TTGAAATTGATTAAAATAGTTTGAGTATATAATTATGATGGCAAAATTCG
AAAATACAAATTTTTAGTCGAAACAAATTTTTAGTCGAAGGGAATATTGA
TCTCGTAAATTCTAAGTCATTATCAGCTCAAATATTCAATCCTTTTTGCA
CAATCTTCAGATTTTTCCGATCATGAGATCCGTTAGACCTTGTCAGAATA
AAAATATTTTATATTGATCGTAATATATTCTGATGTTGTAATCGTTCCAT
TACATTCGGTTTCTCAGTTAGGCCAGTTTCAGCCATTACGAAAGAAAACT
TCCGAGTTGCGTAAAAATAATCGTTTTTCAAAATTTGAATTTTCCATAAT
GGCATAATGGTTGACTTTTGTTTTGAGAGCAAAGGCTATAACCTCTTGTA
CTTCAATAGTTCTCCACTTATTTGCTGGAATGGCTTCATCCATTGCCTTT
AAAGCTTACAGTCCGAATCATTAACAGCTTTCTCGTAAACAATTTTCTCA
AGCATCAGCCATCTCCATCCCAGTATTGGTCTTGCTACTTTCGACACCAC
CCATCACTTTCCTATTGAATTTCTTGATCTGTTTCAAAATCTTTGGTTGT
AGAAAGATGTAACAAAGTGGATCTGATATAATGTTCAAAACATTGACACC
GATAAGTCCTACGATAACCAACAATCGGTCTTCCCCTAACTCCACATGGT
TCACAATGATACTTGGTACATAATTGAACAAGAAAAAAGTCATAACAATA
GCAAAAGGGAGAGCAAATTTACGTAACATCCTGTACCGGTTGTTGGTTGA
CCCAGTATTGTTACCACCGTGTGCCAACCGAGAAGTGTACAGGACTTTGC
AGATGATAAACACATATGCCACCGTAGCGTAACAAGTTGTGAATCCGTTA
AAAACGTGATGCGAGTAGTTGTTGTACGGTGCTCGCTCTGTAGATGTGGT
GTGTTTTAATACCACGCCTGTTGATATAGCGCCACACCATATAAATCCAA
TGGCAACATAACTAGCTATTGTTGGGATGTATTTACGATATTTCAACTCC
AATATGACATACAGCAATCTATCTGTTGTCAGTAAAACCAAGTTAATAAT
ATAAGCTACATAAGCAGCTTGATAAGTTACCAAAAAGTCTAAGGAGAAAC
CGACATCATAGCCAAAGATGGCTACTGACCATGCATTTGTGGCAATGTTG
AAGAATGAAACCAGATTCAAATGGATCAGTAGGATGGACTGGTTTGACAG
AATCTTCATCTTGAGTGTACTGATCTGTAGTACCATTGCCAGTAGATTCA
GCAACATTGCAATGACCATTAATGCTATGTCGAGAACAGCCACAATGGAG
ATTGCACCAGCATTGGTATGAAGATGTTGTGTAGCATTTGAATGATTCGA
ATGTGCCATTATCGTTNCGATCATAATATATTGTGATGTTGTAATCGTCC
CATTACATTCGGTTTCTAGTTAGGCCAGTTCCAGCCATTATGAAAGAAAA
CTTCCGAGTTGCGTAAAAATAATCGTTTTTTCAAAATTTGTATTTTTCCA
TAATGGCATAATGGTTGACTTTTATTTTGAGAGCAAAGGCTATAACCTCT
TCTACTTCAATAGTTCTCCACTTATTTGCTGGAATGGCTTCATCCATTGC
TTTTAAAGCTTACAGTCCGAATCATTAACAGCTTTCTCGTAAACAATTTT
CTCAAGCATCAGCCATCTCCATCCCAGTATTGGTCTTGCTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003196-exon-sc0000025-1575043694:598381..598756 | TCONS_00003196-exon-sc0000025-1575043694:598381..598756 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1575043694:597336..597353 | TCONS_00003196-exon-sc0000025-1575043694:597336..597353 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1575043694:595864..596133 | TCONS_00003196-exon-sc0000025-1575043694:595864..596133 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1510915933:598381..598756 | TCONS_00003196-exon-sc0000025-1510915933:598381..598756 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1510915933:597336..597353 | TCONS_00003196-exon-sc0000025-1510915933:597336..597353 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1510915933:595864..596133 | TCONS_00003196-exon-sc0000025-1510915933:595864..596133 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1491911889:598381..598756 | TCONS_00003196-exon-sc0000025-1491911889:598381..598756 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1491911889:597336..597353 | TCONS_00003196-exon-sc0000025-1491911889:597336..597353 | Clytia hemisphaerica | exon |
| TCONS_00003196-exon-sc0000025-1491911889:595864..596133 | TCONS_00003196-exon-sc0000025-1491911889:595864..596133 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:595864..598756 - |
Blast
The following BLAST results are available for this feature:
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