|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003192 ID=TCONS_00003192|Name=TCONS_00003192|organism=Clytia hemisphaerica|type=transcript|length=1484bp
AATAAATTTGGAACTTAAACAACACGAATTTCAATTTATTGATGAAAGAT
GTTTAAAATCCTATCTTTGTTTATTCTtggaaatttttctttcgtCCAAT
CATCACAGTTTTACGGAGATTCTAGATTTAAAACTTTTCAGAAAACCGAA
AACACACTGAGTCTAGGTACAGGTTACAGTTCAACTGAATGTGCATTAAG
ATgtaaattgaagaagaaaaagcaaTTTGTGAAAGTCGAAAATACAGGAG
AATGCCTTTGTGACGATCGTTTTGTTAAGGTGAAAGAAGAAGTCAATGAG
CAGGTATCAGAGGATGAGAATGCCGAAGGTGTTGTTTTTGAGgcATCTCA
GCACATTACACCGAGGAAATCGTGccgaaaaataaaagaatcgaAATCAG
GATATTATTACGTCATGTTTGACAAAGTAACACGTGTATATTGTGACATG
GAAACACAAGGAGgAGGATGGATGGCTATTACAAATTTGACAGCAGATGG
AAACACCCCCATTCCAGAGGAAGCTACTTACACGTACGATATTCATGAGA
TGGGCAAAATTTCTGACGGGCGGTTTCTACTTGCGATGTCTGAAGTCGCC
CGTCTCCAACAATACATTGGACGAATCACACAATTCAGATTTTACTGTAC
TAAAGCATGGCACGGTAGAATTGTCCATGTTACAAACAAATTAAACGAAG
CTGGTCTCTTATTAAGAGATTCCGCCCTTGATAAAGATATCAGATGGGTG
TCAGTTGACGCCTGTCCAGGCCCCGACGCGCTATATCGTTTGGAAGATGA
CACGTCTACACTTCTTCAATGCCCTTACCGCAACAGAAATATTTATGGGA
TGACAGCAGAGAATATTATATACGATCATTTTCTTTATACTAACAATGTA
GCTACACTTTATTTAAAACGATTTGAGTGTGACGATCTGTCAGGGTATTC
TGGCTTCACCAAAAACGGACAGTGGATTTACTATGTGCGTtgagaaagtg
aagaaaaagaattatttaaggcaaaaaaaaagtagtgtttccggaatgcg
agtcaaggaaaaaagctctcatgcggccggctggatgatttttttttgct
atttctgATAACTTAAGATTATTGAAACAGAACTTTAAAGATagctttta
tgtacaaacagtatgaagtaagccctgaatactaatgtatcaactactga
cgaagtctgcggccgggtcagaaaaaaggccactttcccgatcgggaaat
tGGTGAACTTCCCGATTTGGAAAGTCTAGCCATTTTAGGAAGTTTTCCAC
CTTCCCGTTTGggaatatttcccgttaagggaAAGGATGTAGGACTGCAG
TGCAACGGTAGactattttgcaaaattttactCAATTGTCTCTTTGCTTG
ATATGCTAGCATCAAGACCcaggggggcactcaaggtaccatacgttcgg
cccttaaaggtatatttttcaagcttcccaaaat Run BLAST on NCBI protein sequence of TCONS_00003192-protein >TCONS_00003192-protein ID=TCONS_00003192-protein|Name=TCONS_00003192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MFKILSLFILGNFSFVQSSQFYGDSRFKTFQKTENTLSLGTGYSSTECAL
RCKLKKKKQFVKVENTGECLCDDRFVKVKEEVNEQVSEDENAEGVVFEAS
QHITPRKSCRKIKESKSGYYYVMFDKVTRVYCDMETQGGGWMAITNLTAD
GNTPIPEEATYTYDIHEMGKISDGRFLLAMSEVARLQQYIGRITQFRFYC
TKAWHGRIVHVTNKLNEAGLLLRDSALDKDIRWVSVDACPGPDALYRLED
DTSTLLQCPYRNRNIYGMTAENIIYDHFLYTNNVATLYLKRFECDDLSGY
SGFTKNGQWIYYVR Run BLAST on NCBI transcript from alignment at sc0000025:549101..553192- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003192 ID=TCONS_00003192|Name=TCONS_00003192|organism=Clytia hemisphaerica|type=transcript|length=4092bp|location=Sequence derived from alignment at sc0000025:549101..553192- (Clytia hemisphaerica)
AATAAATTTGGAACTTAAACAACACGAATTTCAATTTATTGATGAAAGAT
GTTTAAAATCCTATCTTTGTTTATTCTTGGAAATTTTTCTTTCGTCCAAT
CATCACAGTTTTACGGAGATTCTAGATTTAAAACTTTTCAGAAAACCGAA
AACACACTGAGTCTAGGTACAGGTTACAGTTCAACTGAATGTGCATTAAG
ATGTAAATTGAAGAAGAAAAAGCAATTTGTGAAAGTCGAAAATACAGGAG
AATGCCTTTGTGACGATCGTTTTGTTAAGGTGAAAGAAGAAGTCAATGAG
CAGGTATCAGAGGATGAGAATGCCGAAGGTGTTGTTTTTGAGGTAAGTGG
AATACTTTAAGTGAAGAAATTTTGGCGGATTGCCGAAAAAGTTCTATCAG
AGTGAATTTTAATTTGACGGGCGGCTTGAAAAATTAAATTTTGGCCGAGT
CCATCGAATCCAGCAGATCAAAATCTAAAATATTGACACCCCCTATCAAG
GGCTTAGATTCAGTGTTTTCATTTATACAATTTTCCTAAAAATTTCAGAT
GAAGAGTTTTTTTAATTATTTCTCACTCAATTTCGCGTGAACTTTCTTTC
GCAAATTGAGAATCCAAAATTTTCGCGTGGACAAAATTTCACGAATCAGT
CACTTATTCTGCCAATTAACTTCTTCCATTTTCCTAAGGATTTCGTCCAA
AATCCTGATTCTAACTATTTCGCGAGGGCTAATATTCATTTGGTAGCTTA
CCGCTTAGATCAGATTACCCAATCTAAAGCTATTTATTCGCTGAGTTGGC
GGTGACCGGGGATCGAATACACAACCCTTAGATAGTAAGGAAAATGATCT
ATCGACTAAGCTGCTTCTCGGCCACTGTTACGCTTAAAAGGGTGCCATAT
TTGTATGTTGTTTTTTTTAGGCATCTCAGCACATTACACCGAGGAAATCG
TGCCGAAAAATAAAAGAATCGAAATCAGGATATTATTACGTCATGTTTGA
CAAAGTAACACGTGTATATTGTGACATGGAAACACAAGGAGGTTGGTTGC
TATTTTTTATTTTGTTTGAACCGGGTGGCCGGGTGACTGGAGACAATGGT
AATCCCCACCTTTTTTACAAAGAAATATATTTCTACTCTCGTGAGGCTGG
GAGCGATACCAATCACAATTCTTCTTTCATCACAAAAGTCGCTGAAATTT
GTCATTAAACAAAAAAGAAATTAGCCCAAATCACGCATTATACACACAGA
TCTGTAAAGCCCGAAGGGCTAGATATGCAACTTTAAGCTTTCTCCAGCAA
AAAAAAAGTGAAGCAAAAAATTGACTTTTTAAATTTCGTGCCCGCGGATA
GGATCTAGCATTTTAATTGTTTTTGGAGCGCGAGATCAACAAAAGTAGGC
TGCAAATGCTATTTCACAACCGGTGAAATTGCATATTTTAGTCACGTGAC
TTTGGTAGGAAATCATTCCAAACCTAGGCTTCACTTTTCGATAAAAGTCG
CTTATCTAGCCCTTCGGGCTTTACAGATCTGTGATTACACATGTCAAATC
TTTGCCCATTTAGTACGTACAAGTAGAAGTATCGCGACATGTCAGCCTGT
GTTTTGACGTCGCTCGAATAAAAAACTAAGGCTAGATTGTCATTTTTTTC
TACTATATGAAACAATTAAGTTAAAGCGACATGGAGGGCAAGGGACATAT
CAGCAGTCAAATATTTGTTCGCAATGGGTAAAACTCGTACCATAAGGCGT
TGTTTCTTCCAAAATAAACTTGAATTAACAAAGCGCTAATACTTCTTCAA
AAAACACACATACTGTACCTCAGACATCGACATGCTAATGAAATGTCCGA
TGCTGGGCCAAAGTCATGGAATGATGGCATATAATGGGTTAATGTACGAA
CATCCATGATAAGTCAAAAGATTCCAGAACAAATTGTCTTAAGAAATAAG
GGCTGACATTTTGCGTTTCATCTTCATCTGCGATGATTTTTTGTTTTGTC
TAAAATTCTTCCGTTAATTAAAGTTTCTTTAGAAATAGCCTAGCAAAAAA
TAATGGAGGGGACAAATTGTTTATACAGTAAAACCTCTAATTAACGGACA
CTCTAAAAGGCGGACACCTCTGATTAGCGGACAATTTAATTTCCCCTGGC
CGTTTCCTAGTCAAATCCTCATAAAAAAGTTTCTAAAAGGCGGACACTCA
ATTAGCGGACCCTCTGATTAGCGGGCAAATTTTTTCGCACGAAATGACCA
AAACCCCTATTTTAGCTCTCCAATTAGCGGACATTGAATATCAAACGGGT
CACAGACGTCCAAAATCGAAAAACATTTTTTAGATATTTTTATTTCAAGC
ACTTATTAGTCTTATTATTCAAATTATTTCTACAAATTTCCAGTTTTCCC
TTCACCCATTCAACGAATTGTATTTTCAATTTTGGTGTTATATTTCTAGA
TTTTCTTTTATTTGTTAAAAACTAAATTGTTGCGTTTTAATAACCTTTCT
CGTGTTCTTCTATGGCCTAGTGTCTGCAGATAAGTACTTTAGACCCCGAT
TTTATATTTTCGACACCCTGGGATGGCCTAATTTCAAAATTGCAGCTCCG
AGATCAAAAGTTTCTAAAAGCCGGACACTTCTAATTAGCGGACACTAACC
CCTTTCCCCGATGGTGTCCGCTAATTAGAGGTTCCACTGTGATGTTTTTT
GTGACGGGTATCGTATTATCATATTACGCCCATATTATTGTATTACATGA
ATTTACATGAATTATAAACGACCCCTAGTCTACTGAGGAAAGAATAATAT
TTAGTGTGCATTTCCTTCTGAAAATATCAAACCAGGGCAAAAAATGACAA
TAGAGGAATCTCTCTCGTTTCAGCAACAAATTTTGAAATTTCAGTAGATA
TTGGGTCGGGTATAGATATAAGGTATTGAAAAACATATAGTACAAAGTAT
CCTAATTCTTTTTTTAATTGGTTAGTATAAAGCTCTGTTATCATTAACAT
TGAGTAATGTTATTGGTTTTAGCTTACACAAAGCATAGTACAAAGTATCT
GTACATTTAATTTTTTCTAAGGAGGATGGATGGCTATTACAAATTTGACA
GCAGATGGAAACACCCCCATTCCAGAGGAAGCTACTTACACGTACGATAT
TCATGAGATGGGCAAAATTTCTGACGGGCGGTTTCTACTTGCGATGTCTG
AAGTCGCCCGTCTCCAACAATACATTGGACGAATCACACAATTCAGATTT
TACTGTACTAAAGCATGGCACGGTAGAATTGTCCATGTTACAAACAAATT
AAACGAAGCTGGTCTCTTATTAAGAGATTCCGCCCTTGATAAAGATATCA
GATGGGTGTCAGTTGACGCCTGTCCAGGCCCCGACGCGCTATATCGTTTG
GAAGATGACACGTCTACACTTCTTCAATGCCCTTACCGCAACAGAAATAT
TTATGGGATGACAGCAGAGAATATTATATACGATCATTTTCTTTATACTA
ACAATGTAGCTACACTTTATTTAAAACGATTTGAGTGTGACGATCTGTCA
GGGTATTCTGGCTTCACCAAAAACGGACAGTGGATTTACTATGTGCGTTG
AGAAAGTGAAGAAAAAGAATTATTTAAGGCAAAAAAAAAGTAGTGTTTCC
GGAATGCGAGTCAAGGAAAAAAGCTCTCATGCGGCCGGCTGGATGATTTT
TTTTTGCTATTTCTGATAACTTAAGATTATTGAAACAGAACTTTAAAGAT
AGCTTTTATGTACAAACAGTATGAAGTAAGCCCTGAATACTAATGTATCA
ACTACTGACGAAGTCTGCGGCCGGGTCAGAAAAAAGGCCACTTTCCCGAT
CGGGAAATTGGTGAACTTCCCGATTTGGAAAGTCTAGCCATTTTAGGAAG
TTTTCCACCTTCCCGTTTGGGAATATTTCCCGTTAAGGGAAAGGATGTAG
GACTGCAGTGCAACGGTAGACTATTTTGCAAAATTTTACTCAATTGTCTC
TTTGCTTGATATGCTAGCATCAAGACCCAGGGGGGCACTCAAGGTACCAT
ACGTTCGGCCCTTAAAGGTATATTTTTCAAGCTTCCCAAAAT Coding sequence (CDS) from alignment at sc0000025:549101..553192- >TCONS_00003192 ID=TCONS_00003192|Name=TCONS_00003192|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at sc0000025:549101..553192- (Clytia hemisphaerica)
GAGGATGGATGGCTATTACAAATTTGACAGCAGATGGAAACACCCCCATT
CCAGAGGAAGCTACTTACACGTACGATATTCATGAGATGGGCAAAATTTC
TGACGGGCGGTTTCTACTTGCGATGTCTGAAGTCGCCCGTCTCCAACAAT
ACATTGGACGAATCACACAATTCAGATTTTACTGTACTAAAGCATGGCAC
GGTAGAATTGTCCATGTTACAAACAAATTAAACGAAGCTGGTCTCTTATT
AAGAGATTCCGCCCTTGATAAAGATATCAGATGGGTGTCAGTTGACGCCT
GTCCAGGCCCCGACGCGCTATATCGTTTGGAAGATGACACGTCTACACTT
CTTCAATGCCCTTACCGCAACAGAAATATTTATGGGATGACAGCAGAGAA
TATTATATACGATCATTTTCTTTATACTAACAATGTAGCTACACTTTATT
TAAAACGATTTGAGTGTGACGATCTGTCAGGGTATTCTGGCTTCACCAAA
AACGGACAGTGGATTTACTATGTGCGTTGAGCATCTCAGCACATTACACC
GAGGAAATCGTGCCGAAAAATAAAAGAATCGAAATCAGGATATTATTACG
TCATGTTTGACAAAGTAACACGTGTATATTGTGACATGGAAACACAAGGA
GATGTTTAAAATCCTATCTTTGTTTATTCTTGGAAATTTTTCTTTCGTCC
AATCATCACAGTTTTACGGAGATTCTAGATTTAAAACTTTTCAGAAAACC
GAAAACACACTGAGTCTAGGTACAGGTTACAGTTCAACTGAATGTGCATT
AAGATGTAAATTGAAGAAGAAAAAGCAATTTGTGAAAGTCGAAAATACAG
GAGAATGCCTTTGTGACGATCGTTTTGTTAAGGTGAAAGAAGAAGTCAAT
GAGCAGGTATCAGAGGATGAGAATGCCGAAGGTGTTGTTTTTGAGGAGGA
TGGATGGCTATTACAAATTTGACAGCAGATGGAAACACCCCCATTCCAGA
GGAAGCTACTTACACGTACGATATTCATGAGATGGGCAAAATTTCTGACG
GGCGGTTTCTACTTGCGATGTCTGAAGTCGCCCGTCTCCAACAATACATT
GGACGAATCACACAATTCAGATTTTACTGTACTAAAGCATGGCACGGTAG
AATTGTCCATGTTACAAACAAATTAAACGAAGCTGGTCTCTTATTAAGAG
ATTCCGCCCTTGATAAAGATATCAGATGGGTGTCAGTTGACGCCTGTCCA
GGCCCCGACGCGCTATATCGTTTGGAAGATGACACGTCTACACTTCTTCA
ATGCCCTTACCGCAACAGAAATATTTATGGGATGACAGCAGAGAATATTA
TATACGATCATTTTCTTTATACTAACAATGTAGCTACACTTTATTTAAAA
CGATTTGAGTGTGACGATCTGTCAGGGTATTCTGGCTTCACCAAAAACGG
ACAGTGGATTTACTATGTGCGTTGAGCATCTCAGCACATTACACCGAGGA
AATCGTGCCGAAAAATAAAAGAATCGAAATCAGGATATTATTACGTCATG
TTTGACAAAGTAACACGTGTATATTGTGACATGGAAACACAAGGAGATGT
TTAAAATCCTATCTTTGTTTATTCTTGGAAATTTTTCTTTCGTCCAATCA
TCACAGTTTTACGGAGATTCTAGATTTAAAACTTTTCAGAAAACCGAAAA
CACACTGAGTCTAGGTACAGGTTACAGTTCAACTGAATGTGCATTAAGAT
GTAAATTGAAGAAGAAAAAGCAATTTGTGAAAGTCGAAAATACAGGAGAA
TGCCTTTGTGACGATCGTTTTGTTAAGGTGAAAGAAGAAGTCAATGAGCA
GGTATCAGAGGATGAGAATGCCGAAGGTGTTGTTTTTGAGGAGGATGGAT
GGCTATTACAAATTTGACAGCAGATGGAAACACCCCCATTCCAGAGGAAG
CTACTTACACGTACGATATTCATGAGATGGGCAAAATTTCTGACGGGCGG
TTTCTACTTGCGATGTCTGAAGTCGCCCGTCTCCAACAATACATTGGACG
AATCACACAATTCAGATTTTACTGTACTAAAGCATGGCACGGTAGAATTG
TCCATGTTACAAACAAATTAAACGAAGCTGGTCTCTTATTAAGAGATTCC
GCCCTTGATAAAGATATCAGATGGGTGTCAGTTGACGCCTGTCCAGGCCC
CGACGCGCTATATCGTTTGGAAGATGACACGTCTACACTTCTTCAATGCC
CTTACCGCAACAGAAATATTTATGGGATGACAGCAGAGAATATTATATAC
GATCATTTTCTTTATACTAACAATGTAGCTACACTTTATTTAAAACGATT
TGAGTGTGACGATCTGTCAGGGTATTCTGGCTTCACCAAAAACGGACAGT
GGATTTACTATGTGCGTTGAGCATCTCAGCACATTACACCGAGGAAATCG
TGCCGAAAAATAAAAGAATCGAAATCAGGATATTATTACGTCATGTTTGA
CAAAGTAACACGTGTATATTGTGACATGGAAACACAAGGAGATGTTTAAA
ATCCTATCTTTGTTTATTCTTGGAAATTTTTCTTTCGTCCAATCATCACA
GTTTTACGGAGATTCTAGATTTAAAACTTTTCAGAAAACCGAAAACACAC
TGAGTCTAGGTACAGGTTACAGTTCAACTGAATGTGCATTAAGATGTAAA
TTGAAGAAGAAAAAGCAATTTGTGAAAGTCGAAAATACAGGAGAATGCCT
TTGTGACGATCGTTTTGTTAAGGTGAAAGAAGAAGTCAATGAGCAGGTAT
CAGAGGATGAGAATGCCGAAGGTGTTGTTTTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003192-exon-sc0000025-1575043694:552851..553192 | TCONS_00003192-exon-sc0000025-1575043694:552851..553192 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1575043694:552152..552272 | TCONS_00003192-exon-sc0000025-1575043694:552152..552272 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1575043694:549101..550121 | TCONS_00003192-exon-sc0000025-1575043694:549101..550121 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1510915933:552851..553192 | TCONS_00003192-exon-sc0000025-1510915933:552851..553192 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1510915933:552152..552272 | TCONS_00003192-exon-sc0000025-1510915933:552152..552272 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1510915933:549101..550121 | TCONS_00003192-exon-sc0000025-1510915933:549101..550121 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1491911889:552851..553192 | TCONS_00003192-exon-sc0000025-1491911889:552851..553192 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1491911889:552152..552272 | TCONS_00003192-exon-sc0000025-1491911889:552152..552272 | Clytia hemisphaerica | exon |
| TCONS_00003192-exon-sc0000025-1491911889:549101..550121 | TCONS_00003192-exon-sc0000025-1491911889:549101..550121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:549101..553192 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
The following BLAST results are available for this feature:
|
