TCONS_00003168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003168
Unique NameTCONS_00003168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003168 ID=TCONS_00003168|Name=TCONS_00003168|organism=Clytia hemisphaerica|type=transcript|length=705bp
AATAAATCAAACAAACAAAGGAACAAAAACACAGGTTAAGTATATATTTA
AAGAAGGAAATTGACTGTTGGAACAAACGAGACTTGAAAGACGAACCAAA
ATGGTAGGGGCACGGAAGAACAGACACATTTGTAGAAGAACGGGCATTTC
AATGCTCTGGTGGTTATGGGTGGTGCTAGCAGTTTGCCAGATTAAAGAAG
TTCAGCCAAGTGGATACATCGAAATACAATTTCATTCTTATATCAATAAA
GATCACACAGACTCAAAAGGAGTATGTTGTAACAATGAATTAAGTACCTG
TAGAATACCATGCCCTAACCAATTCAAAATCTGCTTGCACCAAAACGAGG
CTCAACATGGAAACGAAGCGTCAATGTGCGAGTTTGGTCGTTATGAAAGC
CAAAGGATGGATTATGACGATATATTGTTTCCAGAGAATAAAGTTGATCG
TAATTTAGCTGATGCTATTCGATTCCCATTCGAAACCTGGAAGAAAACCA
CCAATCTGTCAGTCTCCGTAACTGTCAATCTAGCAGACACTCAACGCAAT
ATAGCATCATTTGACCCAGAAGTAATTGTTAATCAAACACCGAGATTTTA
TAAGAATTCAACTGTTCAAAATGTGACGAAAATATATTACATAGTAAGCA
GAAGAGGTATACCACGGTTAACAGAAATTTCATCAACGAAGACGATACAA
TTTGG
Run BLAST on NCBI

protein sequence of TCONS_00003168-protein

>TCONS_00003168-protein ID=TCONS_00003168-protein|Name=TCONS_00003168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MVGARKNRHICRRTGISMLWWLWVVLAVCQIKEVQPSGYIEIQFHSYINK
DHTDSKGVCCNNELSTCRIPCPNQFKICLHQNEAQHGNEASMCEFGRYES
QRMDYDDILFPENKVDRNLADAIRFPFETWKKTTNLSVSVTVNLADTQRN
IASFDPEVIVNQTPRFYKNSTVQNVTKIYYIVSRRGIPRLTEISSTKTIQ
F
Run BLAST on NCBI

transcript from alignment at sc0000025:460696..463221-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003168 ID=TCONS_00003168|Name=TCONS_00003168|organism=Clytia hemisphaerica|type=transcript|length=2526bp|location=Sequence derived from alignment at sc0000025:460696..463221- (Clytia hemisphaerica)
AATAAATCAAACAAACAAAGGAACAAAAACACAGGTTAAGTATATATTTA
AAGAAGGAAATTGACTGTTGGAACAAACGAGACTTGAAAGACGAACCAAA
ATGGTAGGGGCACGGAAGAACAGACACATTTGTAGAAGAACGGGCATTTC
AATGCTCTGGTGGTTATGGGTGGTGCTAGCAGTTTGCCAGATTAAAGTAA
GTAAATATTTGATTGAAGTCGGTAATATTCATGCATAGTCCAGTTATTTT
GGGACTTTTAAGACGATTCTTTTACGGGTTTGGTCTACAGCACTGCTCTC
TAAATACTTGGCTGGATCGAGCTTCCAATATAAAAGGAAGCGTTTCCAGT
TTTAGAGCTGGCTAGTACACCATCTTATTTTCAGTTTTGGTCGTCAACAG
TGCGATTCAAATGTTTTGAAACTTGAACGTTCGGACTAGACTACTTTGCG
GACTAGTCGGCTTTAAAATTGGACACACTTCCACGGGAAGTCTGTGAGTA
GTTAGCCTATCTACTTTGTAGAATAATATGATTCCCGTGTTCCAGAGCAA
GCCCGCAAGGATTTAGCAGAACGGAATTGAGCAGGAGATGGAGAAGCAAT
GATATGAACTAAGAACCCCTAGCTAACTAATCATCAGCTTTTCATAAATT
TTCTTGTTTTAAACCGGTTAAGGAGTTTCTTAAAATCAGTATTTTTCATT
TGTAATTGTGCGTAAATCCGATTAATCGCGATAGTCGGCTTCGATTTCCC
GATCTTTCCGGTTTGATTTCCCGATTTGGTTTGCGTTTGCGCTTGCACTT
ACTAGGATATACTCTTTTAAATTTTATGTTAGATATATTAAGAAAGGCTG
ACCCATGACAATTCCTGGAGTTTGCAGCCGTCCGTCACGTCATTACGGCT
GTTTTATTCAAATTACGATGAAGAAATAATTTAGTAAAAAATATTGATTT
AAACATAGTAACCCATCGGAGCTTTGTGATTCGAACCTTGTTTGAATAAG
ATTCAAAAATATTCTGCAAAAATTGTTTCCCAGAACTGTTTCCCAGAATA
AGTTGACTTGAGCTTGTTGGCTTAACATGTTTGTTGACGTAGAAGTTAAT
CGATCAACAATACTGGTAAATATATCTTAAATTAAACATAGTAATTGAAA
TCCAAACAAAATTAAGCTTGGCGGAACGTTACTAAGCAATCTAAAAACAA
TTTTGTTACCGCACGTGCGAATGGTACCAAGCAAGAACTTAGAACACTGC
TTTCCCCTGTCCGGCGGATTGAGATTGCTTCCGAAAGGTATGGAAAGTAG
ATTGTGTCAAACCGAATGACCGACTAACTTTTTTAAGAGATCTTTTTTGG
CTGGCATTGGAATCTTACTTCGAGAAAGAGAATCTTTGCCATATTGATGC
GACTTGTTGGATTAGGTTCTACCGACAAAGCAAGACGTCTAAAGCTGACA
CAAACGTGATTTCTAATTTTCCTAATTCTCTCTGAATTTTGTTTCTAGGA
AGTTCAGCCAAGTGGATACATCGAAATACAATTTCATTCTTATATCAATA
AAGATCACACAGACTCAAAAGGAGTATGTTGTAACAATGAATTAAGTACC
TGTAGAATACCATGCCCTAACCAATTCAAAATCTGCTTGCACCAAAACGA
GGCTCAACATGGAAACGAAGCGTCAATGTGCGAGTTTGGTCGTTATGAAA
GCCAAAGGATGGATTATGACGATATATTGTTTCCAGAGAATAAAGTTGAT
CGTAATTTAGCTGATGCTATTCGATTCCCATTCGAAACCTGGAAGAAAGT
ATAAAATTTGATTTTAATTTTTATAATTTACTTATAAAGATGGTCTTTCT
ATATAGGTAGATGGGTATGCTGTTATTGTATACACTTTTTTTTTTATTAG
AACATCTGAAATTTTTTTTTATTTTCCCCATTTTTCCATCTTAATGTATT
CCTAAGAAATTGGATGTTTTTGAGTCCGAAAAGCCTTAAAATATTCTTAA
CTTGTTCTTAACATTTTTGCCATCGAAGCCTTATGTTCTTACAAAGTTTG
TTCTTATAAAAAAGCGTGTACAGAGATATTTTCTGTAAACATTTTTGTAA
CACGAGAAGAAACCTTAATTATTACTGGTAGCGTCTGTTTGAAGGTGTTA
TGATTGTTCTACGTGTAAAAGAATATACCAAATTCCATATATCTTTGAAA
GTTTTTGAGTAATTTTAAAGCGCTCAAGTTTGTTAGAGAATTTTGTGGCA
AAAGTAAGCTTCGATTGATGTTGTTCAATCTCAACTAATAGATGTCTCTG
TTTGTTTTTGCATATAGACCACCAATCTGTCAGTCTCCGTAACTGTCAAT
CTAGCAGACACTCAACGCAATATAGCATCATTTGACCCAGAAGTAATTGT
TAATCAAACACCGAGATTTTATAAGAATTCAACTGTTCAAAATGTGACGA
AAATATATTACATAGTAAGCAGAAGAGGTATACCACGGTTAACAGAAATT
TCATCAACGAAGACGATACAATTTGG

Coding sequence (CDS) from alignment at sc0000025:460696..463221-

>TCONS_00003168 ID=TCONS_00003168|Name=TCONS_00003168|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at sc0000025:460696..463221- (Clytia hemisphaerica)
ACCACCAATCTGTCAGTCTCCGTAACTGTCAATCTAGCAGACACTCAACG
CAATATAGCATCATTTGACCCAGAAGTAATTGTTAATCAAACACCGAGAT
TTTATAAGAATTCAACTGTTCAAAATGTGACGAAAATATATTACATAGTA
AGCAGAAGAGGTATACCACGGTTAACAGAAATTTCATCAACGAAGACGAT
ACAATTTGAAGTTCAGCCAAGTGGATACATCGAAATACAATTTCATTCTT
ATATCAATAAAGATCACACAGACTCAAAAGGAGTATGTTGTAACAATGAA
TTAAGTACCTGTAGAATACCATGCCCTAACCAATTCAAAATCTGCTTGCA
CCAAAACGAGGCTCAACATGGAAACGAAGCGTCAATGTGCGAGTTTGGTC
GTTATGAAAGCCAAAGGATGGATTATGACGATATATTGTTTCCAGAGAAT
AAAGTTGATCGTAATTTAGCTGATGCTATTCGATTCCCATTCGAAACCTG
GAAGAAAATGGTAGGGGCACGGAAGAACAGACACATTTGTAGAAGAACGG
GCATTTCAATGCTCTGGTGGTTATGGGTGGTGCTAGCAGTTTGCCAGATT
AAAACCACCAATCTGTCAGTCTCCGTAACTGTCAATCTAGCAGACACTCA
ACGCAATATAGCATCATTTGACCCAGAAGTAATTGTTAATCAAACACCGA
GATTTTATAAGAATTCAACTGTTCAAAATGTGACGAAAATATATTACATA
GTAAGCAGAAGAGGTATACCACGGTTAACAGAAATTTCATCAACGAAGAC
GATACAATTTGAAGTTCAGCCAAGTGGATACATCGAAATACAATTTCATT
CTTATATCAATAAAGATCACACAGACTCAAAAGGAGTATGTTGTAACAAT
GAATTAAGTACCTGTAGAATACCATGCCCTAACCAATTCAAAATCTGCTT
GCACCAAAACGAGGCTCAACATGGAAACGAAGCGTCAATGTGCGAGTTTG
GTCGTTATGAAAGCCAAAGGATGGATTATGACGATATATTGTTTCCAGAG
AATAAAGTTGATCGTAATTTAGCTGATGCTATTCGATTCCCATTCGAAAC
CTGGAAGAAAATGGTAGGGGCACGGAAGAACAGACACATTTGTAGAAGAA
CGGGCATTTCAATGCTCTGGTGGTTATGGGTGGTGCTAGCAGTTTGCCAG
ATTAAAACCACCAATCTGTCAGTCTCCGTAACTGTCAATCTAGCAGACAC
TCAACGCAATATAGCATCATTTGACCCAGAAGTAATTGTTAATCAAACAC
CGAGATTTTATAAGAATTCAACTGTTCAAAATGTGACGAAAATATATTAC
ATAGTAAGCAGAAGAGGTATACCACGGTTAACAGAAATTTCATCAACGAA
GACGATACAATTTGAAGTTCAGCCAAGTGGATACATCGAAATACAATTTC
ATTCTTATATCAATAAAGATCACACAGACTCAAAAGGAGTATGTTGTAAC
AATGAATTAAGTACCTGTAGAATACCATGCCCTAACCAATTCAAAATCTG
CTTGCACCAAAACGAGGCTCAACATGGAAACGAAGCGTCAATGTGCGAGT
TTGGTCGTTATGAAAGCCAAAGGATGGATTATGACGATATATTGTTTCCA
GAGAATAAAGTTGATCGTAATTTAGCTGATGCTATTCGATTCCCATTCGA
AACCTGGAAGAAAATGGTAGGGGCACGGAAGAACAGACACATTTGTAGAA
GAACGGGCATTTCAATGCTCTGGTGGTTATGGGTGGTGCTAGCAGTTTGC
CAGATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001754XLOC_001754Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003168-proteinTCONS_00003168-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003168-exon-sc0000025-1575043694:463026..463221TCONS_00003168-exon-sc0000025-1575043694:463026..463221Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1575043694:461424..461723TCONS_00003168-exon-sc0000025-1575043694:461424..461723Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1575043694:460696..460904TCONS_00003168-exon-sc0000025-1575043694:460696..460904Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1510915933:463026..463221TCONS_00003168-exon-sc0000025-1510915933:463026..463221Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1510915933:461424..461723TCONS_00003168-exon-sc0000025-1510915933:461424..461723Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1510915933:460696..460904TCONS_00003168-exon-sc0000025-1510915933:460696..460904Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1491911889:463026..463221TCONS_00003168-exon-sc0000025-1491911889:463026..463221Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1491911889:461424..461723TCONS_00003168-exon-sc0000025-1491911889:461424..461723Clytia hemisphaericaexon
TCONS_00003168-exon-sc0000025-1491911889:460696..460904TCONS_00003168-exon-sc0000025-1491911889:460696..460904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:460696..463221 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286111	0.348754	0.404937	0.158467	0.0964591	0.304893	0.551761	0.172184	0.36165	0.373302	0.0724672	0.476371	1.71255	1.18567	0.203079	0.217935	2.84587	6.60435	33.4556	14.5605	0.69157	0.101197	0.328049	0.223683	0	0.274155	0	0	0.15878	0.323544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011651Notch_ligand_N
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0007219Notch signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0007219 Notch signaling pathway
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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