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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003162 ID=TCONS_00003162|Name=TCONS_00003162|organism=Clytia hemisphaerica|type=transcript|length=2667bpRun BLAST on NCBI protein sequence of TCONS_00003162-protein >TCONS_00003162-protein ID=TCONS_00003162-protein|Name=TCONS_00003162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp LVGLTRYTSDKNTKEIKMMKASILLALVAVCAAASWDYTDPNKLWTGDCSRun BLAST on NCBI transcript from alignment at sc0000025:313015..327500- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003162 ID=TCONS_00003162|Name=TCONS_00003162|organism=Clytia hemisphaerica|type=transcript|length=14486bp|location=Sequence derived from alignment at sc0000025:313015..327500- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:313015..327500- >TCONS_00003162 ID=TCONS_00003162|Name=TCONS_00003162|organism=Clytia hemisphaerica|type=CDS|length=25368bp|location=Sequence derived from alignment at sc0000025:313015..327500- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003162 vs. Swiss-Prot (Human)
Match: CAH7 (Carbonic anhydrase 7 OS=Homo sapiens GN=CA7 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 3.698e-48 Identity = 110/269 (40.89%), Postives = 149/269 (55.39%), Query Frame = 3
Query: 918 WDYESTEIGASAWPKLFPICVDNTETSRQSPINIVSANATHDDDLKPLKMTSYDSANQNMMQLSNNGHSITVSLGGSRFDSSVEHLGVE--YELAQFHFHWSDQPLGGGSEHTHDGKQYFAEVHFVHFN-KKYDSLGAAAAQSDGLLVWGHFIQAGNGSSNHTGYKTIFDAFENVKYKESTHNIDYVKPADLIPPMHNHYYTYPGSLTTPRCFESVTWIVNRDIIDISVDQAHQMLGVLENKNGDAEKKMYNNWRPVQDLNNRVVRKNF 1715
W Y + G S W KL+PI + RQSPINI+S+ A + L+PL++ SY++ + ++NNGHS+ V S + V +E Y L QFHFHW + GSEHT DGK + +E+H VH+N KKY + G AA+ DGL V G F++ G+ H + DA V++K + P L+P HY+TYPGSLTTP ESVTWIV R+ I IS Q + +L D M NN+RP Q L RVV+ +F
Sbjct: 7 WGYGQDD-GPSHWHKLYPI----AQGDRQSPINIISSQAVYSPSLQPLEL-SYEACMS--LSITNNGHSVQVDFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKK-HDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLETGD---EHPSMNRLTDALYMVRFKGTKAQFSCFNPKCLLP-ASRHYWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKASF 262 HSP 2 Score: 140.198 bits (352), Expect = 2.188e-36 Identity = 90/246 (36.59%), Postives = 124/246 (50.41%), Query Frame = 3
Query: 150 SSGKKQSPINIVKANVEKDTNLYKLQAPNYNETRTGSTYTISNNGHGLVVTPVIDTTDLFDALPYMVSQ-HVAYELAQFHFHWGINDTQGSEHTVDGKEYPLEVHFVHYN-RKYGNISAAVEKSDGLLVLGYLFEISSAENEDLKPIIDAVKDVLYLGNSTSIPFFPPQKLFPTEWYKFFHYEGSLTTPGCYESVKWFVDQAPLKVSSAQVAELRKMYEGSNQDKP--MTHNFRPPQGLNGRKVKS 875
+ G +QSPINI+ + +L L+ + +I+NNGH + V D D D Y L QFHFHWG GSEHTVDGK +P E+H VH+N +KY A DGL V+G E + E+ + + DA+ V + G F P+ L P + ++ Y GSLTTP ESV W V + P+ +S Q+ + R + S D+ M +NFRPPQ L GR VK+
Sbjct: 25 AQGDRQSPINIISSQAVYSPSLQPLEL----SYEACMSLSITNNGHSVQV----DFNDSDDRTVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAASAPDGLAVVGVFLE-TGDEHPSMNRLTDALYMVRFKGTKAQFSCFNPKCLLPASRH-YWTYPGSLTTPPLSESVTWIVLREPICISERQMGKFRSLLFTSEDDERIHMVNNFRPPQPLKGRVVKA 260 The following BLAST results are available for this feature:
BLAST of TCONS_00003162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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