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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003156 ID=TCONS_00003156|Name=TCONS_00003156|organism=Clytia hemisphaerica|type=transcript|length=1206bp
AAAAAAAAAGCTGTGTAATAAAACAATATGATAAAATCAAACACACAAAA
ATATGACGAAATCCAACTTTTCattaaattcattttctttgccttttttg
aaatattgcaaGTAGCTTAAAAAATTTGAAGCAATCACGGTCAAATTTTC
ACAGAGGACAATTTTAAAGTGAAAACGGGGAAAATGACACGATTCTTGTT
GAATTTGGGTGTATTGGCGCTAATTGTTATCGTGTGTGTATATGGCATGC
CACGAAGCAAGAGGTTGAACGAAAAGGTTGGAAAACGAAGTCAAAATCAA
CGATGGAACAACCAATTTCAAAGATGCCACACATCGTATTACACATGCCA
TGATCATTACGGCAAATATCCTGGATGTGCAGCCATCTGTAACCAAAATT
TCTGGAATTGTCTTGAGAATCGACCACTATCACCTATGTATTGTTGATAT
AAACTCCAGTAGcgtgaatttctcaaaaatgcatTCTTCCAACAACTGAA
GATTATAACCAGTATCATCGAATTATGTTCCATTTTATTGTTAATCGATT
TTctaatcttcaaaataatttatccaaaattgtatttttttaatgaacTT
AATATATTGATTGGATTTGATAACAATTAACGATGAAAGTTTTCATTCAT
TTAAAGTCCTGTCTTCTTTTCACATCTTCCAAACCTTCCAAGTTTATATC
CTAAACTCTGTACTCATAGGTAAAAATGTTGACATcgtgttcattttttt
tttgagatattcaccaaccaaatttttttctaagttagTTCATTAACGTT
TGCGCTAGAAGGAAAAAATATAACAGAAAAGTGCCATTATCAATTGGGTG
CAGGTAACCTAccaaaaaatttagtttttttccaTATTTAGGGTTGTTTA
AGGCTCGCCACACCCATTAATATGATGGATATTTCGAATGATCACATCTG
GACAAGCATCATACCATTTATCCAAGATTGAAATTTCTGAATCATAAAAG
ACTTGCGCTCCAAAATTATACTTAGACATTTCCAGATTGTCGTTTAAGTA
AACATGATACTCAGTGGAATCACCAGAATCATCAGTCGTTTGCATCACCG
TTGCACGTTGGAAGCCATCTTCGGCAACCCAAGACCACCATGCAGTGCTT
GGATTAACGTCTATCGAACTTGAGATGTGCAGATTGTTTTTGTTGGCTGG
CTTTGG Run BLAST on NCBI transcript from alignment at sc0000025:264457..266586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003156 ID=TCONS_00003156|Name=TCONS_00003156|organism=Clytia hemisphaerica|type=transcript|length=2130bp|location=Sequence derived from alignment at sc0000025:264457..266586- (Clytia hemisphaerica)
AAAAAAAAAGCTGTGTAATAAAACAATATGATAAAATCAAACACACAAAA
ATATGACGAAATCCAACTTTTCATTAAATTCATTTTCTTTGCCTTTTTTG
AAATATTGCAAGTAGCTTAAAAAATTTGAAGCAATCACGGTCAAATTTTC
ACAGAGGACAATTTTAAAGTGAAAACGGGGAAAATGACACGATTCTTGTT
GAATTTGGGTGTATTGGCGCTAATTGTTATCGTGTGTGTATATGGCATGC
CACGAAGCAAGGTAAGAGGATAATTTGAATGTTTTTTTGGCTTTGAAGAC
AGGTCATTGTTTCCGACGAAAAAAACTCCCGAGTCCCTTGGACTTTTTTT
CCAATAGATGTTATCGGAGTTTTTGATTTTTTCTAAAAAAGCGATGCATC
GTGGGATTGTTTCGGTGGTATTACAATATAAATCTCTTAGTGCTCTCAAA
CCGCTTATATACATACTAAAAATGAAAGATTTACATCCCAATTGGCGTTT
AGCTGGTCTAGTTTGTCTCAACATTTTGTACGGTAGCAAACACATATCCA
AATATAGGATTACCCCGATAAAGTTGAATAAAATATGGATTTAAAAGTTA
AGTACATCTATAGCTAAACTGTCGCAAGACCAATCCAAATAAAAACATTA
AAAAAACCCTCACTAAGGATCAACTATTTACTTGTTCTTCCCATATAGAG
GTTGAACGAAAAGGTTGGAAAACGAAGTCAAAATCAACGATGGAACAACC
AATTTCAAGTAAGCGAGAACTGTAATTTTTACACACGAACACGAACTTTT
AGTCGACGCTTAGCAATTCTAATTTTTTTCAACCCCCCCCCCTCCGCACA
TTGTTGGGACGATATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGT
CGTTAACAAGCAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTAA
TTTTATTACTTCAAATGACCAATTATCAAATTATCTTATAAAAACTCCAT
CTCACCTGACCTTATAAGGACCCCGTCGTTTATTAGTTGGCGGTGAAAGA
TTTTATCTTTCAAGAGTAGAGTCCCTCATTTTGCTTTTGCTCTATTTAGT
CTGGCTTTAGTCATTTTATTAAAACTTGAAGATTTCCCGTGTTAGTAAGT
CTCTGAGAGCGATTAGAGAATTTTGTTATAATTAGGAAATTTACTTTGTC
CGTTTATCAAAATTTTTGTAATACCATTCTACTTGGTTTTTATAGAGATG
CCACACATCGTATTACACATGCCATGATCATTACGGCAAATATCCTGGAT
GTGCAGCCATCTGTAACCAAAATTTCTGGAATTGTCTTGAGAATCGACCA
CTATCACCTATGTATTGTTGATATAAACTCCAGTAGCGTGAATTTCTCAA
AAATGCATTCTTCCAACAACTGAAGATTATAACCAGTATCATCGAATTAT
GTTCCATTTTATTGTTAATCGATTTTCTAATCTTCAAAATAATTTATCCA
AAATTGTATTTTTTTAATGAACTTAATATATTGATTGGATTTGATAACAA
TTAACGATGAAAGTTTTCATTCATTTAAAGTCCTGTCTTCTTTTCACATC
TTCCAAACCTTCCAAGTTTATATCCTAAACTCTGTACTCATAGGTAAAAA
TGTTGACATCGTGTTCATTTTTTTTTTGAGATATTCACCAACCAAATTTT
TTTCTAAGTTAGTTCATTAACGTTTGCGCTAGAAGGAAAAAATATAACAG
AAAAGTGCCATTATCAATTGGGTGCAGGTAACCTACCAAAAAATTTAGTT
TTTTTCCATATTTAGGGTTGTTTAAGGCTCGCCACACCCATTAATATGAT
GGATATTTCGAATGATCACATCTGGACAAGCATCATACCATTTATCCAAG
ATTGAAATTTCTGAATCATAAAAGACTTGCGCTCCAAAATTATACTTAGA
CATTTCCAGATTGTCGTTTAAGTAAACATGATACTCAGTGGAATCACCAG
AATCATCAGTCGTTTGCATCACCGTTGCACGTTGGAAGCCATCTTCGGCA
ACCCAAGACCACCATGCAGTGCTTGGATTAACGTCTATCGAACTTGAGAT
GTGCAGATTGTTTTTGTTGGCTGGCTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003156-exon-sc0000025-1575043694:266326..266586 | TCONS_00003156-exon-sc0000025-1575043694:266326..266586 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1575043694:265829..265888 | TCONS_00003156-exon-sc0000025-1575043694:265829..265888 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1575043694:264457..265341 | TCONS_00003156-exon-sc0000025-1575043694:264457..265341 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1510915933:266326..266586 | TCONS_00003156-exon-sc0000025-1510915933:266326..266586 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1510915933:265829..265888 | TCONS_00003156-exon-sc0000025-1510915933:265829..265888 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1510915933:264457..265341 | TCONS_00003156-exon-sc0000025-1510915933:264457..265341 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1491911889:266326..266586 | TCONS_00003156-exon-sc0000025-1491911889:266326..266586 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1491911889:265829..265888 | TCONS_00003156-exon-sc0000025-1491911889:265829..265888 | Clytia hemisphaerica | exon |
| TCONS_00003156-exon-sc0000025-1491911889:264457..265341 | TCONS_00003156-exon-sc0000025-1491911889:264457..265341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:264457..266586 - |
Blast
The following BLAST results are available for this feature:
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