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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003154 ID=TCONS_00003154|Name=TCONS_00003154|organism=Clytia hemisphaerica|type=transcript|length=304bp
AAATCAGGAAAGAAGaaatataCATTTCCATTGACAGTAGCAATGGTCCA
TTTTGTAACAGTTTTTCTCTTGGCTGCATTCTTCAGACGGCTACTTGAGA
TATACCAAAAAGAAGATAGGACTGTACTGGATTGGAAAGTATATATCAAA
AAGGTTTTTCCATCAGCAATATCTGCGTCACTGGACATTGGATTGTCAAA
CTGGAGTATTATGCTAAGCACTGTTTCCTTatatACAATGGCAAAGTCTA
CAGCAATCATCttcattcttttattttctgtGATGCTAGGATTAGAGAAA
CCAG Run BLAST on NCBI transcript from alignment at sc0000025:231514..233380- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003154 ID=TCONS_00003154|Name=TCONS_00003154|organism=Clytia hemisphaerica|type=transcript|length=1867bp|location=Sequence derived from alignment at sc0000025:231514..233380- (Clytia hemisphaerica)
AAATCAGGAAAGAAGGTAAGATTCCACATAAAAATGTCTGGGACGATTGG
TTGAAACATGATGGGACTGTTGCATATCTGGTCTGTATTTTCACTTACTG
TAAAATCGAAAGAGAAATCGTGTATTTTTTAATACGCCGCTCATTAACTC
AAATAAAATGACTTTGGAGGTTCGGTGAAATGGTGGATGGCCGTCCCATG
TTTTGTCAGATAGATAAACCATCTTATCAGAAAGTTTGTCTCTTCCTGAT
GTTGCCGCACAACACTTAACACTTAGATAAGTCCCAAAATGGTGGATTTC
AAGCAAAAAGCCTTACAAAACAGCCAAAATATCGACTCCAAAAAAGCCAA
AAAGACAAAGGAAGTGCCATCAAAGTTGTTGCTTTTCTTTCTCTCGTAGC
TTCTGCTTGCATCTTAGATTCTTTGTTTATATTACTTTCAGTATTGTTTA
CCTCTGCATATGGAGTCAATGGGTCTATTTTAGCGCTGTTGTTTTGGTGG
AGATTCTAATAGGCGTATTCAAGATATACATCCATATCTAAGGCAGTAAG
AATCCTAATTAGTTGTATTGCAAGACCATGAAAATATATATTGCATAGTG
TAGCTTGGCTCAGATTCATTATATCTTAGGTAACATTTGCTTTTTATTCT
TTTTATTTTTAGAAATATACATTTCCATTGACAGTAGCAATGGTCCATTT
TGTAACAGTTTTTCTCTTGGCTGCATTCTTCAGACGGCTACTTGAGATAT
ACCAAAAAGAAGATAGGACTGTACTGGATTGGAAAGTATATATCAAAAAG
GTTTTTCCATCAGGTAAACAGATACTCTTTTTAAAGGTGTAATTTACTAT
GATTTACTTACTTACTTTGGTATTTCGGAATTCTGAAATTGTTTCGGTAT
CAGAAATCCATGAATTTTTGCTACAAAATTTCGGTATTATAAAGTTTTTA
TCCCCTTTTTTCGGAATTCATACATGAAAAATCAAATTTGATGAAAAATT
AGTCAGAACGAGGAAAAATACATAAGTATTTTTTTACGAATTTCGGAAAT
TTTGGCAAAATTATTTGGTATTTCGGAAATCGCAAACCCTGTACGCCCCC
ATTAAATGCTGGCTTCAAAAATCTGCAAAAATCTCTATTTTTATTTTTTA
TTAAAGATTGTATTTTTTTCTTATTTTATAAGCAATATCTGCGTCACTGG
ACATTGGATTGTCAAACTGGAGTATTATGCTAAGCACTGTTTCCTTGTAG
GTAGTATGAGGTGCTTATGTATCTATTCTATCGGCGCCCCATGAAGAACT
TCAGACAGTTTTTTTACGTTTAGTGCGCGAACAAATCTCTTTTAAATACT
TGGATTTGATTATAGAAAGTATATATCATTTATTTTTTTTTGAATTTGGA
TTTTAAAATCTAATAGCTATAGAATGTTTTGAGCCAAATTTAGAAAAAGT
AATTCCTCAAATTTTAAGTTAGGTTGTATCCTTTCTAAGTTCTTAATATA
AGAAATTAAGAGGTCATCTTTTTCGGCTTTAAGAAGTCAAATGTCCTACT
GTCCTAGGTCACCTAGATTATCAATTTTATACACCCTTGTAATTTCAAGA
TCCCATTACATGGAATACTCTGCCTTAAAAATTAGCTGATTCACTTTTAT
TTATCTTTTATTGCTTTTAAACAAACACTTTCAAAAGTTTCCACTTTTCG
GCTTCCTTACTGTAAAATTTAAAACACAACTAACCAGTACAAATTATACG
CATAGTTCTTCAGTTTACACAACTTTTTCTTTTTTCTTTTTAGATATACA
ATGGCAAAGTCTACAGCAATCATCTTCATTCTTTTATTTTCTGTGATGCT
AGGATTAGAGAAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003154-exon-sc0000025-1575043694:233366..233380 | TCONS_00003154-exon-sc0000025-1575043694:233366..233380 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1575043694:232568..232718 | TCONS_00003154-exon-sc0000025-1575043694:232568..232718 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1575043694:232135..232198 | TCONS_00003154-exon-sc0000025-1575043694:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1575043694:231514..231587 | TCONS_00003154-exon-sc0000025-1575043694:231514..231587 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1510915933:233366..233380 | TCONS_00003154-exon-sc0000025-1510915933:233366..233380 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1510915933:232568..232718 | TCONS_00003154-exon-sc0000025-1510915933:232568..232718 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1510915933:232135..232198 | TCONS_00003154-exon-sc0000025-1510915933:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1510915933:231514..231587 | TCONS_00003154-exon-sc0000025-1510915933:231514..231587 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1491911889:233366..233380 | TCONS_00003154-exon-sc0000025-1491911889:233366..233380 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1491911889:232568..232718 | TCONS_00003154-exon-sc0000025-1491911889:232568..232718 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1491911889:232135..232198 | TCONS_00003154-exon-sc0000025-1491911889:232135..232198 | Clytia hemisphaerica | exon |
| TCONS_00003154-exon-sc0000025-1491911889:231514..231587 | TCONS_00003154-exon-sc0000025-1491911889:231514..231587 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:231514..233380 - |
Blast
BLAST of TCONS_00003154 vs. Swiss-Prot (Human)
Match: S35C2 (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 2.451e-21 Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 13 KKYTFPLTVAMVHFVTVXXXXXXXXXXXEIYQKEDRTVLDWKVYIKKVFPSAISASLDIGLSNWSIMLSTVSLYTMAKSTAIIFILLFSVMLGLEK 300
K + FPL + M+H +FL +A R L++ R VL W Y+++V P+A++ +LD+GLSNWS + TVSLYTM KS+A++FIL+FS++ LE+
Sbjct: 40 KSFHFPLFMTMLHLAVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEE 135
The following BLAST results are available for this feature:
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