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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003125 ID=TCONS_00003125|Name=TCONS_00003125|organism=Clytia hemisphaerica|type=transcript|length=1474bp
TTGATATACTTTGTACCTGAGTTGAGTGATTCTTAATCAGCGCTAGTTTG
TGggttaattttgtttttccagCAAAGACAAAAGAACTCACTTATACTTT
GTAAAAGCAGCAAACACTTATTTGAAACTCATGTAATAAAAGTTCAAACC
AGTTGAATTTGGATGAACTGAAAAATTAGAGAAACTATTcgtaatttgaa
atttaaagacaagttgaaaaatgaagatgcgaaatttagtttttctttgC
ACCCATGGAACGGGTGGTGGCGGTGGCGGAAATGGTCTGGATGATAAAAA
TTCAAGCTTAGGCCACGAACAATACTCCGAGTACACGACCACGCATACTA
CgacaaaaaagaagaacagtTTCAAGCTATCCATGCCAAATATACAATGC
CCGCAGGATACAAGTGAAGCCATCCGACAAAGACCAGCATTAAATCGAAC
GAAATCGGAAGATAGTCAAACGAGTGGTATTGATATGCGAATCTCAGAAC
AAGATCTCGGCTCGGATGCCGAAAGTTTACCGTCTTGCGAAGAAAGCTTA
ACGAATTCCGAAAATAGTCCACCGAACAGCCCCGAACTTTTTAAACAGAA
ACAAGAAGTTAGCCGACGTGAATCTGCTCCTGCGAGTTTCAATATCAAGA
TTTTAGACGACATACAAGGTTTGAATGAAATTAATGAGGAAAGATCGAGA
GAATTTCATCGACGATATAGTTCAGTCGAGGAACGAACAAGTCGTGTTCG
ATTTAATCTCGAGGAATCTtttaaagaagaagaagaccATTATAGTAAac
aatttgatgaaaatgaagagCAGCCAAAATTTTCGGACATTGAAGGGTAT
AAGGTTGCTCCTTTAACTCAATATCCACGCAAAGTTTCAAGTCCTCCTTG
TTTGTCATGTGATATCGAGGAAGTGCGACAAGAATATCAACAGAACCAGC
AAGTACCGACAGCACAACGAAAAGACTCGTCGGACCGTTCTCGTAAATGT
TCGGTATACTCTGATAATTCAGGATCTATTCAGATTCTTCCAGGACAATC
TGTACGAAAAGTTTCGTCGCAAGAAAATTTAATTCGCGAAGAAGAAGAGT
CGACGCCTATTGCACCTTTACGAAATAAATATGATCGTAAAATAAGTTTA
CAGGAACCTAAATTACGGAAAGACTCACGTGTTGATAATCGTAAGTTGAG
TCTCCAAGAGAACTCTAGCCGACGAAAATCGGTATGTATTGACGAGAAAT
CTACAAACGAAAACTCACGAAAATTTAGTTTACAAATACCTCGAAGACGC
CCCAGTTTTTCAGATCGTAAATTAAGCTTACAAGAACGTAAAAACTCAAC
ACACGAGCGTAAAATGTCATCGCACNTTGTCTCTTAAgcttttggtttgt
ttttgtggaatttaaTCTGTATTGATGGGGTattaagatttttgtaaggG
CCCAGTCATAGTTTTCGGATATTC Run BLAST on NCBI transcript from alignment at sc0000025:764742..772675+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003125 ID=TCONS_00003125|Name=TCONS_00003125|organism=Clytia hemisphaerica|type=transcript|length=7934bp|location=Sequence derived from alignment at sc0000025:764742..772675+ (Clytia hemisphaerica)
TTGATATACTTTGTACCTGAGTTGAGTGATTCTTAATCAGCGCTAGTTTG
TGggttaattttgtttttccagCAAAGACAAAAGAACTCACTTATACTTT
GTAAAAGCAGCAAACACTTATTTGAAACTCATGTAATAAAAGTTCAAACC
AGTTGAATTTGGATGAACTGAAAAATTAGAGAAACTATTcgtaatttgaa
atttaaagacaagttgaaaaatgaagatgcgaaatttagtttttctttgC
ACCCATGGAACGGGTGGTGGCGGTGGCGGAAATGGTCTGGATGATAAAAA
TTCAAGCTTAGGTAAATATGGTTGGTCAGTTTTTTCAAACCTGTCATtag
aattaatgaaaatttgttaCCGGGGATAATAGTGGCAGTCTAGGGTCCAA
GTATTTTCGTTCTTTATGGGCAAAAGCAATGATAGTTTTGGAATAATGCT
TTATAATATTATTCATAATATTAAAATTTACACTATATTTTTGTGCCGTT
GCGGAGGTGTCGAAGCCTATAAATAGGGGTGACATTAACCACTTGTAcct
ttttattttgcttcaagtaCTGTCTTTCTTACGTCTTCAACGATTATGTA
TATGCTTGTAGCAAAATATCAATGTCATAATTTCTACCTTCTCATAAACA
ACTTGCGGTCAAAAGTGTGGCGTCCCATTCGCAGAGGAGGGTCACCTTTC
GTTTGTAGAACAATAATaaaactgcaaaaaaaaaacgaaatcaCAAAAAG
CGCTAAGATAAACATGAGACTACCTTATGTAAAAACAGTCCTCGTTACAT
TCtgacaaaaaatttgattttgtgtgtttttgttttgttgttagtATTAG
CGTCGAGACCAGTAAAGGGCTTCCCTGGTAGAAAATCTTGATAAGATCTT
ACCAAGATCTTTTAAAGAAACTTGGCAAGAACTTTGTAGGTTTCTTCTCA
AGATCTGTGCAAAGAACTTTAAAGATCTTGACAAGATCTTGACACAATCG
TTTaggatctttaaagatctttaagGATTCTTGAAGGTTTAAGATCTTTC
AAGAATCGTATTCAAAAATATACACACCCAAAAGATAAATCTGCTAAATT
TTCTCCTTTCAACTAATAAAGAAATCATAAGATTCTTAGACCTGAATATT
AATGGTTCCTAAATTTTAGAACATTTGCCTCGACTTTGACGATTACAAGA
TCTCAAAACAGATACACATGAGATTTTTTAACTTCAAATCAGTCtaactg
acgagttaggctCACTGTCTAGATCGCTATTTATCCGGGCATACAGGAAA
ACTGGgagccgggaggcgggaggctgaaccgggagccgggagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNggcgggaggcgggaggctgaaaacgaaagtgggaggcg
ggaggctaaaatcgaaagtgggaggcgggaggctgaaaatgaaagtggga
ggcgggaggctaaaatcgaaaggGGGAaacgggaggctgaaaacgaaagt
gggaggcgggatgctaaaattgaaagtgggaggcgggaggctgaaaacaa
aagtgggaggcgggaggctgaaaacaaaagtgagagGCTCATTTATGAGG
CCACGCACAAACGTTTTTGGTAACGTAACTATTATATACTATTGTAACTA
TTCAAGGGATAGGTAACAAAGAGCTAAGAAAAATcagatcatttattttt
tataaacacacacaatccatcaaaaaaactatttcaaatagTATGTTAAT
TGAAACCAATTGTTTTCCTAGGAAGCGtttctctttataaaaataatttt
acataaaaatataGCAAGCTTTGTTTCGAAACTGCTGATGCaagatttaa
ttacaaaaaaatataacatgacAGTTTTCGAGTGTTATATATATTTAGTG
CAATCGGCTCTTGCATGttggaaataatctaaaatcatttctttaaAAAG
TCAATAATTATACAAGTCATGGTGAAATAAAGGTTGAATTATAATCATTG
TTCACTTCAATTGATATCACCTGAGTGGCCGAGTGGATAAGTCGATGAAA
CGGCAACTCATCTTTGGTGGTTTTAgagagttcgaatcctatacggtgtg
acgaaaattgtgttattttgtctgttttgtcaaCATTGATCAAACATTTc
ctggttttatgagctcttgttgatatttttgaaacttttNattttgtctg
ttttgtcaacattgatcaaactttttctggttttatgagctcttgttgat
atttttgaaactttttgttaaaattttaagaaacaaattggggggagggg
gcagtcaggcaaattgaccgacgccgCGACGGGTTACCTGCgacggttaa
gggtatgttttccaatttatcagaaatgcactgtaagggtggaaatttca
gcaaatctatgGGAATAATTATTGCTCAAAAAATCTTGATTgctcgaaaa
tcttgattttttttgctctaaaagatttgaaaaaatgcattgaaagggta
tgaatttttttctgcactataagggtgcgattctaaatgCCAATTTTTTT
GCCGCACATACTGTCAATTGGTAAACCCCCACCCCCGGGAGTGTCACCTC
AGCTTAATGCAGTTTGATTCAAGTatagtatttcaaaatggatcaggttg
gttggcgggtggagagtcaagagtcaagagttatgactttcccttctctt
gaaaatccaatgttccaaaactttcaactaaaaaaaatgcaaaaaaatcg
gcttttatctttttttattatcttataaacacttttttcagaaccacaag
tgaaaagaaaagccAAACTGACTGAATATGCTGCCAAAAaagtgattgac
aggtctagaaaatgattgacaggcccGGGTTAGATATTTCCGTNgtgagc
aatctcgttatatttataaataaaccagctgtgctggaaggtcagcccga
aATTATAAGAAAGATTAGAAGATAAGAAGATTAAGATATTTAATTCAAGG
AAAActagttgaaaaaaaattagttatcgcgtattttccaaggaaaatta
gttatcgcgtattatccaaggaaaattagttattgcgtattatccaagga
aaattagttgttgcgtattatccaaggaaaattagttatcgcgtattatc
caaggaaaattagttattgcgtattctccaaggaagatcactagaccgta
ttttccaaggaaaatcactatGGTCcttattttctgaggaaaattagttc
ttgcgtattttccaaggaaaatcctttgttccgttctttccaaggaaaat
caattttcacgtatttttcaagaaaaattaatCATTACATACTTTCCAAG
GAAAGTCAATTGCTATAGCTAATTTCCAAAGGAAATCATTTGTGTCGTAT
tgtccaaggaaaatcacagcacTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaagtctctcaaagggtcccaaaatcatcaaaatt
ttatctCTCAAAGgggcgattttcgatttttgctttggacatacctgtca
cctcgcaaacctagtactgTTTGACACtctgtttttatctttttgaagGC
GTTTTCAAGCTCAGAAAATTATGGTCGGTACCTCAAGACTTGAGGACCGT
TATAAAGCCAGGgagtgcttgaaaaatcaattNNNNNTTGACAttctgtt
tttatctttttgaagGCGTTTTCAAGCTCAGAAAATTATGGTCGGTACCT
CAAGACTTGAGGACCGTTATAAAGCCAGGgagtgcttgaaaaatcaattt
ttttgattaggtctgaaatatttttgatccctgtggatagatgcgtttag
aaaagaaaaaaaatacacatGGGGGAATGGAACCCTGGACTATCTGGCTT
TGAAACTGTTGCTCTACCTACTGAGTTAATTGGACGAATGTGCAACGTTT
TTGAACGGAAACGGATGATGGAAAGAGCCGATTTGAAAGCTCAGCGGGCT
GACCAAAAAGTAATATACTTGTGGAAAGCCCAATTATTCTACTTTTTCGA
ATGCTGTgtcatggaatttttttaaacaattaaaTAGAACGGGGTCTCCT
CTGATGTAAACAAACCTCGAGTCCTATCCTGAAAATTGACATTGagcgta
gaaaaaaagacaaatgaaagtattttcctttttaattcatATTTCCAATA
ATTAAAGACTAACTTGAAAACACCAAGAGTGAAATGTAGCTAAATAATTG
GAACGCCTTgcgacttagaatttttttgcaaaactgaaaatttgaccccg
gctcgaactaCTACCAAAGTCTCTTGACTCTGATTCTGAGTCCGACACGC
TAGCAATGTACTATCGAGCCGATATAAAATTACGCAATTtaaaattcctt
ataaaaaacactactgcaTATACGGGTGAACTGACCTCATGGGCTAGGCT
AACTGTTTAGATCAATTACATACTCCAGGCTCCGTAAGGTTCCTTATTAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ngcctcccactttcgttttcagcctcccgcctcccactttcaatttcagc
ctcccgcctcccactttcgttttcagcctccccgcctcccgcctcccact
ttcgatttcagcctcccgactcccggctcccggttcagcctcccgcctcc
cggctcCCAGTTTTCCTGTATGCCTTTATCCGGTATTATACTCCACCCCA
TTGTATTCTTCGCCCTTACTTGTCAGCGCTAAATTACTCATTGTGGTGTA
TACAATATAGGCTCTGTTGTGTAGCAATCTACTAATttgccgtaattcta
cagatgtctgtagaaatatgaaatctacatattttgtagaataatAATTC
GACCCTATATACCCTATTTGTATGGTTGTatgtaaatttgatatttaaat
tctttaaaaaaagtcaaaatcgaAGATTTTATCATAACCACAAATTTACG
TGTTATTGTGTTTATTCAACAAGATTCTTAACCcgaactttataagaaac
actaAGAATCTTAAAGTTTCTTTGCATATTTGTCTattaagatttggaaa
gtctctttataagaacttgataagaaacgctaagaatcttaaaatatttt
atggTTGCAAGATTTCATAAGATTTCATAAGATTCTTCTANNTAAGATCT
TACAAAGATCTCTTAAGATTCTTACTtgttaaagatctttaaagatcttt
aacgatcttttcagatcttatcaagaatttttaccagggtTTGAGGGTGA
ATTCTTTGTTCGTACGAGTTTTAACTTGGTAATTGTCCCTTGTCCGATTT
TGCTGGCTTTAGTGTGTCTATGcttgctttttttatttttggacaatttc
aaaatttctcttcaacaatttatTCATTTTGCATTAAGCTTGTTAACATG
CAATTTTCAAAATGCTGTTACTTTTATTGTTGATTAGCAGTGTTAAGAGA
ATTGACAGCAATTTATCATTGCCAAAGTTAATTAACTGAATGTACAACAa
cgaaaaattaatgaaatgaGTTTGTTAGTATTGCGGTATTAAACCAATAG
GTGGTTGATTTAATTAATTCCACTTTGATTTGATTGCGTTATCTTTATTC
ATTTGAATTGAGTCAAtcttgtattttcattttctgatcTATATCGCAAT
TTGTTGAAATCTAATATATGCGGTCTGTTTAGCCGAGTATTTGATTTGTG
TCTGCTTGGGATGTCGTAGATTTATTCATGCAGCATTTTTGTAACTTTAT
AAATTTACTTTTCTTTGTCAGGCCACGAACAATACTCCGAGTACACGACC
ACGCATACTACgacaaaaaagaagaacagtTTCAAGCTATCCATGCCAAA
TATACAATGCCCGCAGGATACAAGTGAAGCCATCCGACAAAGACCAGCAT
TAAATCGAACGAAATCGGAAGATAGTCAAACGAGTGGTATTGATATGCGA
ATCTCAGAACAAGATCTCGGCTCGGATGCCGAAAGTTTACCGTCTTGCGA
AGAAAGCTTAACGAATTCCGAAAATAGTCCACCGAACAGCCCCGAACTTT
TTAAACAGAAACAAGAAGTTAGCCGACGTGAATCTGCTCCTGCGAGTTTC
AATATCAAGATTTTAGACGACATACAAGGTTTGAATGAAATTAATGAGGA
AAGATCGAGAGAATTTCATCGACGATATAGTTCAGTCGAGGAACGAACAA
GTCGTGTTCGATTTAATCTCGAGGAATCTtttaaagaagaagaagaccAT
TATAGTAAacaatttgatgaaaatgaagagCAGCCAAAATTTTCGGACAT
TGAAGGGTATAAGGTTGCTCCTTTAACTCAATATCCACGCAAAGTTTCAA
GTCCTCCTTGTTTGTCATGTGATATCGAGGAAGTGCGACAAGAATATCAA
CAGAACCAGCAAGTACCGACAGCACAACGAAAAGACTCGTCGGACCGTTC
TCGTAAATGTTCGGTATACTCTGATAATTCAGGATCTATTCAGATTCTTC
CAGGACAATCTGTACGAAAAGTTTCGTCGCAAGAAAATTTAATTCGCGAA
GAAGAAGAGTCGACGCCTATTGCACCTTTACGAAATAAATATGATCGTAA
AATAAGTTTACAGGAACCTAAATTACGGAAAGACTCACGTGTTGATAATC
GTAAGTTGAGTCTCCAAGAGAACTCTAGCCGACGAAAATCGGTATGTATT
GACGAGAAATCTACAAACGAAAACTCACGAAAATTTAGTTTACAAATACC
TCGAAGACGCCCCAGTTTTTCAGATCGTAAATTAAGCTTACAAGAACGTA
AAAACTCAACACACGAGCGTAAAATGTCATCGCACNTTGTCTCTTAAgct
tttggtttgtttttgtggaatttaaTCTGTATTGATGGGGTattaagatt
tttgtaaggGCCCAGTCATAGTTTTCGGATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003125-exon-sc0000025-1491911889:764742..765052 | TCONS_00003125-exon-sc0000025-1491911889:764742..765052 | Clytia hemisphaerica | exon |
| TCONS_00003125-exon-sc0000025-1510915933:764742..765052 | TCONS_00003125-exon-sc0000025-1510915933:764742..765052 | Clytia hemisphaerica | exon |
| TCONS_00003125-exon-sc0000025-1575043694:764742..765052 | TCONS_00003125-exon-sc0000025-1575043694:764742..765052 | Clytia hemisphaerica | exon |
| TCONS_00003125-exon-sc0000025-1491911889:771513..772675 | TCONS_00003125-exon-sc0000025-1491911889:771513..772675 | Clytia hemisphaerica | exon |
| TCONS_00003125-exon-sc0000025-1510915933:771513..772675 | TCONS_00003125-exon-sc0000025-1510915933:771513..772675 | Clytia hemisphaerica | exon |
| TCONS_00003125-exon-sc0000025-1575043694:771513..772675 | TCONS_00003125-exon-sc0000025-1575043694:771513..772675 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000025 | supercontig | sc0000025:764742..772675 + |
Blast
The following BLAST results are available for this feature:
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