TCONS_00003098 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003098
Unique NameTCONS_00003098
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003098 ID=TCONS_00003098|Name=TCONS_00003098|organism=Clytia hemisphaerica|type=transcript|length=375bp
ttcattttgaagcgACAAAGAAATTATGAATTTGCTGTCAATAGACAAGA
TTATCATCTCTCTGATGCTGACGTCTTTCATGGTCACCAGAGTTAGTGGT
GAAATCGATTCAGACACGCATGATCGAATTTCCACTAGTGTGGACAGTGT
GGTATCCGTGGTTGAGTTGATCAAAGACCGAAATGACGCACTGACCGAAG
CTGGTAAAGCAGTTGGTACCGTTCTCTCTTTCGTTGGTAAACTTGCACCA
CTATTGAGTGGTCTGACCTCCTTCCTATCCATTCTGTTGATCTTTCTCCC
ACAGCAAGATTCCGAAGAACTGACATACATGAAAGAAAAATTTGCCGAAG
TTAATCGGAAGTTAGATGCTGTTNC
Run BLAST on NCBI

protein sequence of TCONS_00003098-protein

>TCONS_00003098-protein ID=TCONS_00003098-protein|Name=TCONS_00003098-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MNLLSIDKIIISLMLTSFMVTRVSGEIDSDTHDRISTSVDSVVSVVELIK
DRNDALTEAGKAVGTVLSFVGKLAPLLSGLTSFLSILLIFLPQQDSEELT
YMKEKFAEVNRKLDAV
Run BLAST on NCBI

transcript from alignment at sc0000025:274199..275018+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003098 ID=TCONS_00003098|Name=TCONS_00003098|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at sc0000025:274199..275018+ (Clytia hemisphaerica)
ttcattttgaagcgACAAAGAAATTATGAATTTGCTGTCAATAGACAAGA
TTATCATCTCTCTGATGCTGACGTCTTTCATGGTCACCAGAGTTAGTGGT
GAAATCGATTCAGACACGCATGATCGAATTTCCACTAGTGTGGACAGTGT
GGTATCCGTGGTTGAGTTGATCAAAGACCGAAATGACGCACTGACCGAAG
CTGGTGAGTCTATTAGCTCTACTCTGTGAGACTggtttttcatctttgtt
gCTCGATGTTGGAGACATATTGAAGGAAAGTCCGGCTTTTCTAGACTAAA
GGGCAGTCGTTTCTTCGTACTCACTAATCGGGGCGAAATAAGTTGAAGCG
GGGATACGGGAAACGCCATAAGTTTAATTTGGAATAACCATGCTAACTGG
ACGTATCCGGTGTGATGAAAGCGTTAGCTGCAGCGTAATATAGCCGGATA
TTATGAAAGCCTTTTGAtcaggaagaagaagaaattactGCGCCGTGACT
TATAccgaaaaaatgccaaaaaatttaGCTCAATTAGCTACTTAACCATC
CAACATCTATTAGTTCCAATCTACCTTTCTGCCGATGAAAGATTCCATAG
TTaaagtggttcttataaaaaagcgtttaatTTCTCTACTTTTTTCAGGT
AAAGCAGTTGGTACCGTTCTCTCTTTCGTTGGTAAACTTGCACCACTATT
GAGTGGTCTGACCTCCTTCCTATCCATTCTGTTGATCTTTCTCCCACAGC
AAGATTCCGAAGAACTGACATACATGAAAGAAAAATTTGCCGAAGTTAAT
CGGAAGTTAGATGCTGTTNC

Coding sequence (CDS) from alignment at sc0000025:274199..275018+

>TCONS_00003098 ID=TCONS_00003098|Name=TCONS_00003098|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000025:274199..275018+ (Clytia hemisphaerica)
ATGAATTTGCTGTCAATAGACAAGATTATCATCTCTCTGATGCTGACGTC
TTTCATGGTCACCAGAGTTAGTGGTGAAATCGATTCAGACACGCATGATC
GAATTTCCACTAGTGTGGACAGTGTGGTATCCGTGGTTGAGTTGATCAAA
GACCGAAATGACGCACTGACCGAAGCTGGTAAAGCAGTTGGTACCGTTCT
CTCTTTCGTTGGTAAACTTGCACCACTATTGAGTGGTCTGACCTCCTTCC
TATCCATTCTGTTGATCTTTCTCCCACAGCAAGATTCCGAAGAACTGACA
TACATGAAAGAAAAATTTGCCGAAGTTAATCGGAAGTTAGATGCTGTTAT
GAATTTGCTGTCAATAGACAAGATTATCATCTCTCTGATGCTGACGTCTT
TCATGGTCACCAGAGTTAGTGGTGAAATCGATTCAGACACGCATGATCGA
ATTTCCACTAGTGTGGACAGTGTGGTATCCGTGGTTGAGTTGATCAAAGA
CCGAAATGACGCACTGACCGAAGCTGGTAAAGCAGTTGGTACCGTTCTCT
CTTTCGTTGGTAAACTTGCACCACTATTGAGTGGTCTGACCTCCTTCCTA
TCCATTCTGTTGATCTTTCTCCCACAGCAAGATTCCGAAGAACTGACATA
CATGAAAGAAAAATTTGCCGAAGTTAATCGGAAGTTAGATGCTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001720XLOC_001720Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003098-proteinTCONS_00003098-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003098-exon-sc0000025-1491911889:274199..274401TCONS_00003098-exon-sc0000025-1491911889:274199..274401Clytia hemisphaericaexon
TCONS_00003098-exon-sc0000025-1510915933:274199..274401TCONS_00003098-exon-sc0000025-1510915933:274199..274401Clytia hemisphaericaexon
TCONS_00003098-exon-sc0000025-1575043694:274199..274401TCONS_00003098-exon-sc0000025-1575043694:274199..274401Clytia hemisphaericaexon
TCONS_00003098-exon-sc0000025-1491911889:274847..275018TCONS_00003098-exon-sc0000025-1491911889:274847..275018Clytia hemisphaericaexon
TCONS_00003098-exon-sc0000025-1510915933:274847..275018TCONS_00003098-exon-sc0000025-1510915933:274847..275018Clytia hemisphaericaexon
TCONS_00003098-exon-sc0000025-1575043694:274847..275018TCONS_00003098-exon-sc0000025-1575043694:274847..275018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:274199..275018 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	3.55348	2.65704	0	0	0.481319	1.15112	7.95167	13.3134	1.03319	1.51186	0.735146	0.668354	1.37678	1.02395	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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