TCONS_00003092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003092
Unique NameTCONS_00003092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003092 ID=TCONS_00003092|Name=TCONS_00003092|organism=Clytia hemisphaerica|type=transcript|length=3406bp
TttagaaactaaaaaaaaaaacatactgAATCACACCTTTAAACATAAAT
GGACTTTTAatgcaaatttaaaaactttcaaaaccaaCAAATTATTTTAT
GAAGAGTTTCAAACACAAAACATATCATATACATAGTCACACTGGGTGGT
TCAGTGTGCAAGTGTAGCCGACTGCCACCCGATTCTGTCCAACCAGCTCC
ACAACTAACACCCCAGCCACAATCACCTGAAGTCATGGGTGGCCGTCAAT
CCACTCAAAACATGGCGCACCGCCATCATCATTCACCCACCCAAGGCTCC
TCAAGATACTCAACAGCCTCTTTAGATAATGGCAGTCTTCAAGCCAGAGC
TAGTGGAAGTATTGATTTTTCATCGTCAGATGGTAGACCGGTCAGTCGTC
GCAGGAGAAGGCGGGATCAGAACGACCAATTTATTGAAGCACATTCCCTG
CCATCACATTTATTCCCATTTGTAACAGCTGAAATCAAGTGTCCAGTATG
TAACAAGAGGATTGGCACTAGTGAAATTGAATCACACTTATTGGCATGTT
TGTCCAAACCAAGGGTATCTTATAATGAGGATACACTAAAGTCAGATGCT
GGTGAATGTATCATTTGCTTTGATGACATGATTGCAGGGGAACACATTGC
TCGGCTGCCATGTCTGTGTATTTACCATAAAAAATGCTTGGACGAATGGT
TTCAGCGGAACAGATGTTGTCCTGCTCATCCAGATCAAATACCACAAGAA
TATTCCACGGACGTCTCTTCAACATCCTCTTCACTTCCTCACATGGACGA
TACTGAGGGTGGTAGTCAGCAACAGGCTGAAGCCATTGCAGTGGCTAGCT
CTGCACCTACGACATCCTCTAGAACTAGTAGTAGATTGGATGATAATGAC
CAGCCTTCATCTCCTCAAAGAGGTGCTGTTTCGAATTATTCGGAAGGTGT
ATTTCAACTGACTGATGATACGGAAGAAGATATTAGAAATCCTTTTGCTA
ACCATAGCAACCAAAATGATGTAACAAACAATGAAACAAATATGGCGGAA
ACTGCACATGATAGTAATAACGTAAATACCCATTTAGAGAATCCAATGCC
TGATATTAGCACAACTACGAATGCTCAAGGTGAGCTTGATGAACCAGATA
CTACGAGCGAACGAAATGACAATTTACAACCTTCAGCGACGTTAGCCGCC
CAACCAGATCTGAATTTGAATGCCTCGACCTCCTCTACTGGCTCAAACGG
CGCTGTGGCTCCACTTGAAGACTGCGGATGTGCACCAGTGACGATTAGTA
GTGGAGGGAAAGGAACCCAGAATATTGGAAAACACAGAACGGTTGTTCAT
GTAGACGATGGTTCCATACACGGCTCTCCTAATTTGTGCAATGATGAAGA
AATTGAACAACTGGCATCCAAAATAAAAACCATTCTTGTTCAAGACAGTC
CTAGAGGTGTTGGTACACGTACCGATTATGAGGCAACTTGAATGCGTTGA
TTTATTTTGGTATGGTTTTCTTTAACTGTGGAATGCGTGCGTCGAATGGA
TTACGTAATCTTTGAaagtgagagagagagagaggtgGAAATAATAGAGT
TGCATAAATTCCTCGGATAACGAATGGAAAAGAAATCGATAAAGATGATT
AGAAACTATTCAGTGGCGGATCTGAGgggttcaaaatttatgacgaAGAA
TTTTTATTTCCTTATAAGCAGTATGGCTAAAAGAAACACTTTCCGTCATA
AATTTTAAACCCCCCTTACATCCGCCACTGCTATTGAAAGTTGTTGGATT
GACAAATGACAATGACGTAGGAGTTTGAGTTCTATAACCATTATTCGTAT
AAATTCCCGATGGGCGCTACTTAGTCCTCTGCTCCTATCGACTTATAACA
CCATTTAAATgaactttttgaatattttttaattttttcaaaagaaatct
aatcttccttttcaaagaaaatttctttcttctaaCTTTTTTAATAATGC
CATTCTGTTCTAAGATATCCTAGTATCAATGTTTGTACCAATTTTTCCCG
AGATAACTGACCAAGGGAGTAATTGGTACTTcattaatagaaaaaaatcg
aaCTGTTGAGATAAGAACTGGCTAAATACGTATGATTCTTTcattctttc
aactttttattttccttgGCCTGAATACTAGATTTTATACGGATTTTGAT
TATACGCTCGTACTCAAATGATTGGCTTTAAACCATTATGTGGCAACgct
ttcaaaaatttgactgCATTTGTCAATGAGACTCTACGATGATTTGAGCA
AATTTATGATTATGCTGAATATCAAGTGGGATTCTTTTTCTCACGACAAT
ACACAGACAACACAAAAACTATATTactttaacatgagacttatgttgct
ttttaaatGGCTGGTTACCTGCAGGTTTGGATGCATGTATCTAGTTGaga
tttcttcaaaatttgtaaattagagaattttttggttattttataTTAAT
CGATAGCGCTTCATCGCATCTTTATACATTCCACGGGTAATTCTTACAGG
CTTTGGTTATTTTCAGGGATTAATGAATAGGGGGTATTGCTTTCTTGAGA
TACTACAAGTTTTTTATGAGCAAGTGTTTTCAAAATATGCAGGCTCAGAT
TTGTAACTTTTTGAGCATAGCCCAAAAGTTTGCAGATAAAAGGCCGACTA
AAAAGTTTTCCGATCTCGCTGAACAATTTTTTCTATCAAGATTATTCAAA
TTAAGCATCATTatgtttatatatattttagaCCTTTAAGATCCTACAGT
GTTCCTCAGTAAAACCTACaaattgaaatctttgaaaataagcttttgaa
actttttttatacTGTAGTAGGTTGAACTTGCAATTTGGTTttcgaacaa
ataaaaaaaaaagatttggagaTTGTAGACTATCGTAAAAGAAGTCTGCA
GTCTAAGGTTCTTTTGTTTAGAGTACCCCAGTCTAGAAAAGAACGTTCTT
CCCCCCCTCCCCTTGCCATGACATTCGTGTAATGGTGTTGTTTTATAATC
TTGTGCTTTGGGCCTGTTGATCAACCTACTCCTACACTACTATTGActgt
atattttttgaattattttctaaaactgCTATGTAGTGCCACTTAATTAA
ATTGTAAAcactttattaaaaaacaaaataataacaaatttgAATGACTT
GGATCTTACCTGGACACTGTCCTCGGCCCATTAAAACCTTTTTGGTGGGT
TTAATTCACGAACCCATCTTCgttatttaattttctttatcttaAGTTAA
ATTAGTCGAAATTTATTTGTTAAACCTCTTTAAAATCTTGTCTTTAGGAT
TTTCTTACTGAATAACGTCATCACAAATTGCACCGAAAATGGTTCAAATC
TTTCCG
Run BLAST on NCBI

protein sequence of TCONS_00003092-protein

>TCONS_00003092-protein ID=TCONS_00003092-protein|Name=TCONS_00003092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MGGRQSTQNMAHRHHHSPTQGSSRYSTASLDNGSLQARASGSIDFSSSDG
RPVSRRRRRRDQNDQFIEAHSLPSHLFPFVTAEIKCPVCNKRIGTSEIES
HLLACLSKPRVSYNEDTLKSDAGECIICFDDMIAGEHIARLPCLCIYHKK
CLDEWFQRNRCCPAHPDQIPQEYSTDVSSTSSSLPHMDDTEGGSQQQAEA
IAVASSAPTTSSRTSSRLDDNDQPSSPQRGAVSNYSEGVFQLTDDTEEDI
RNPFANHSNQNDVTNNETNMAETAHDSNNVNTHLENPMPDISTTTNAQGE
LDEPDTTSERNDNLQPSATLAAQPDLNLNASTSSTGSNGAVAPLEDCGCA
PVTISSGGKGTQNIGKHRTVVHVDDGSIHGSPNLCNDEEIEQLASKIKTI
LVQDSPRGVGTRTDYEAT
Run BLAST on NCBI

transcript from alignment at sc0000025:214830..220427+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003092 ID=TCONS_00003092|Name=TCONS_00003092|organism=Clytia hemisphaerica|type=transcript|length=5598bp|location=Sequence derived from alignment at sc0000025:214830..220427+ (Clytia hemisphaerica)
TttagaaactaaaaaaaaaaacatactgAATCACACCTTTAAACATAAAT
GGACTTTTAatgcaaatttaaaaactttcaaaaccaaCAAATTATTTTAT
GAAGAGTTTCAAACACAAAACATATCATATACATAGTCACACTGGGTGGT
TCAGTGTGCAAGTGTAGCCGACTGCCACCCGATTCTGTCCAACCAGCTCC
ACAACTAACACCCCAGCCACAATCACCTGAAGTCATGGGTGGCCGTCAAT
CCACTCAAAACATGGCGCACCGCCATCATCATTCACCCACCCAAGGCTCC
TCAAGATACTCAACAGCCTCTTTAGATAATGGCAGTCTTCAAGCCAGAGC
TAGTGGAAGTATTGATTTTTCATCGTCAGATGGTAGACCGGTCAGTCGTC
GCAGGAGAAGGCGGGATCAGAACGACCAATTTATTGAAGCACATTCCCTG
CCATCACATTTATTCCCATTTGTAACAGGTGAGTGAAACTTGTGTTTTAG
ACTGGTTTCGTTCTAATCAACAAagtaattatttctttaaatcaTAACAC
AAAGATTTGCTGATGAACTTGGGTTAAGAGTAAGGATCTCGAAAACATTC
CTCGTTATTGGGCACTTGTTTGCATCAAACAAAGATACCACATGGagaat
gtaaaatttttagagCCACAGGACTGTTTGAATCGTTGCATTTAAGCTTT
TCTAGTATGTTTGTCTGGTTATTCTGCTATGTATTCTAAAAGAGCTTGTT
ATTATAGCAACAACTTATTTTCTGTTTGTTTAGAGTTTATTTCCTCTTTT
TATTCGGTAATCTAATAAGAACTTACCCTAAAAATAgttcttttttgaaa
aggatCGAGGAGGTGGTCAAGAATGTTTTTAGTAGTTTGTTTGTATAATC
TGCATTCTTTTTGAATGGTTTTGATAGAAAGGTGTCAAAGAAGGGGTCAA
AATGATCAAGAGGATTGGGAATTTGGAATTtgttaaaattgcttaaaaag
aaagaaagtatTTGAAGTATTTTAAATATTTACAGCAAAGTAACCTGAAG
TGACTCAATATTTCAATATATTGGTATAAGGTCGATATTTTGATGTTGAA
TTTACGAATATCGAAGTTTGAAAGCAAACCTCAGGCTCTTGAGAGCACTG
ATCTAAGCCATCCAACGTTTATTATGTATTgtgaaaaaattacaaacatt
TTGACCTATTATTTTAGCTGAAATCAAGTGTCCAGTATGTAACAAGAGGA
TTGGCACTAGTGAAATTGAATCACACTTATTGGCATGTTTGTCCAAACCA
AGGGTATCTTATAATGGTAAGTATATTTCTACAAACTGTATGTCAAAAAG
TGTGcagtgtttttgtttttggtcATAACTTTCCAATCAGTTGTGGtata
ataaaaaatttgaacccGCTTATATTTTACAcgcaattttaaaaattttt
ccaaaaaagtaaagaaaaacaaaaaagaacgtGCGAAATTACCCAAAGTC
TACCAAATCAAGGGTGGtaccccccaaaaaaaattgCCATCTCCCAAATC
AAATTCACGGAATAGTTTTGCTTCTAGCCGTCCACCAAATTGaattcccg
tcaaaatttcttcctttatacGGCTTGAATATATTTTCACCGTTCAAGCT
TTTCTTCTTTTACAGAGGATACACTAAAGTCAGATGCTGGTGAATGTATC
ATTTGCTTTGATGACATGATTGCAGGTATTATGATAGTAGTTTTTTAACT
AACTACTTGAAGAGCTTTATGAGAAGGATTTCCAAGTTTGTCCGATGTTT
CATATTCAATCAATTTGTTGAGAGTTACCTGGTATATCAAATGCGCTATT
GATTGGAACTTTCTTTTTGAAACCGAAGTAGGGAggggaaattgtgataa
aataGGATGCAATACACTAGAAATACAGAAACAACATGATTTGGAGGGTA
ATATTTGGATTAATTAGTGATCCAAAAATCACTCGAAGAGACCatgtttt
tcctttttaattgTATAATGGCCTAAAGAAAAACTAGAAGTTCTCACATT
GCTAAAGTTTTTCTCGCCCAAGGCGTTCTAAAAGTTAGAATGTGAATTTT
CGATGTTCTTTTTGTTATAAAAGTTGACCCCATAAAAAATTCGACTTCTT
CTATAATAGAATTGCGATTTGTTAGAAAAGTATTTGGTTTTACATTCGGG
CAATTACAAAAAAGGACTATTACGGATTAATCACCCTAATTGCCCCTTAC
ATCTCTAAGCTAAATTGTAATCAGCCATATATGATTTTCAATACCAAATC
TTATTTCAGGGGAACACATTGCTCGGCTGCCATGTCTGTGTATTTACCAT
AAAAAGTAAGTAACATCTTCTTCTCTTGTCAACAGAGCAGAGCTTTTATG
TCAATTTGGGCTTCCCGAATTCCTTCTTATTCAATTCAAACCCTCCAAGT
ACCCTTGATGTTTTTTGAGATACTTTCAAAGGAATTTAGCTAGTAGGTCA
GATTATTNAAACCCTCCAAGTACCCTTGATCTTTTTTGAGATACTTTCAA
AGGAATTTAGCTAGTAGGTCAAATTATGATGAAATGCAAGAAGCGTTTAT
AGGCAAGTAAAGGCTGATTCATTACTTGTTTAAATGATGGCTATCGATTT
TATTTCGTACAATTGACATCCTTTCTGAAATGAAATGATCCTAGTAATAC
AAACACCATGTAAAAATCAGATAGCAAGAATATGTTTTTGTGTCGTAGTA
CAGGGTTCAAAATAACCGTTGGacaacaaaaatgcaaaatgttCTTTGTC
CTACCCAAAATTCATAATTTCCATTTCGTcgattaaaatttcaaaaataa
cccaacaattttctcttttcttcagATGCTTGGACGAATGGTTTCAGCGG
AACAGATGTTGTCCTGCTCATCCAGATCAAATACCACAAGAATATTCCAC
GGACGTCTCTTCAACATCCTCTTCACTTCCTCACATGGACGATACTGAGG
GTGGTAGTCAGCAACAGGCTGAAGCCATTGCAGTGGCTAGCTCTGCACCT
ACGACATCCTCTAGAACTAGTAGTAGATTGGATGATAATGACCAGCCTTC
ATCTCCTCAAAGAGGTGCTGTTTCGAATTATTCGGAAGGTGTATTTCAAC
TGACTGATGATACGGAAGAAGATATTAGAAATCCTTTTGCTAACCATAGC
AACCAAAATGATGTAACAAACAATGAAACAAATATGGCGGAAACTGCACA
TGATAGTAATAACGTAAATACCCATTTAGAGAATCCAATGCCTGATATTA
GCACAACTACGAATGCTCAAGGTGAGCTTGATGAACCAGATACTACGAGC
GAACGAAATGACAATTTACAACCTTCAGCGACGTTAGCCGCCCAACCAGA
TCTGAATTTGAATGCCTCGACCTCCTCTACTGGCTCAAACGGCGCTGTGG
CTCCACTTGAAGACTGCGGATGTGCACCAGTGACGATTAGTAGTGGAGGG
AAAGGAACCCAGAATATTGGAAAACACAGAACGGTTGTTCATGTAGACGA
TGGTTCCATACACGGCTCTCCTAATTTGTGCAATGATGAAGAAATTGAAC
AACTGGCATCCAAAATAAAAACCATTCTTGTTCAAGACAGTCCTAGAGGT
GTTGGTACACGTACCGATTATGAGGCAACTTGAATGCGTTGATTTATTTT
GGTATGGTTTTCTTTAACTGTGGAATGCGTGCGTCGAATGGATTACGTAA
TCTTTGAaagtgagagagagagagaggtgGAAATAATAGAGTTGCATAAA
TTCCTCGGATAACGAATGGAAAAGAAATCGATAAAGATGATTAGAAACTA
TTCAGTGGCGGATCTGAGgggttcaaaatttatgacgaAGAATTTTTATT
TCCTTATAAGCAGTATGGCTAAAAGAAACACTTTCCGTCATAAATTTTAA
ACCCCCCTTACATCCGCCACTGCTATTGAAAGTTGTTGGATTGACAAATG
ACAATGACGTAGGAGTTTGAGTTCTATAACCATTATTCGTATAAATTCCC
GATGGGCGCTACTTAGTCCTCTGCTCCTATCGACTTATAACACCATTTAA
ATgaactttttgaatattttttaattttttcaaaagaaatctaatcttcc
ttttcaaagaaaatttctttcttctaaCTTTTTTAATAATGCCATTCTGT
TCTAAGATATCCTAGTATCAATGTTTGTACCAATTTTTCCCGAGATAACT
GACCAAGGGAGTAATTGGTACTTcattaatagaaaaaaatcgaaCTGTTG
AGATAAGAACTGGCTAAATACGTATGATTCTTTcattctttcaacttttt
attttccttgGCCTGAATACTAGATTTTATACGGATTTTGATTATACGCT
CGTACTCAAATGATTGGCTTTAAACCATTATGTGGCAACgctttcaaaaa
tttgactgCATTTGTCAATGAGACTCTACGATGATTTGAGCAAATTTATG
ATTATGCTGAATATCAAGTGGGATTCTTTTTCTCACGACAATACACAGAC
AACACAAAAACTATATTactttaacatgagacttatgttgctttttaaat
GGCTGGTTACCTGCAGGTTTGGATGCATGTATCTAGTTGagatttcttca
aaatttgtaaattagagaattttttggttattttataTTAATCGATAGCG
CTTCATCGCATCTTTATACATTCCACGGGTAATTCTTACAGGCTTTGGTT
ATTTTCAGGGATTAATGAATAGGGGGTATTGCTTTCTTGAGATACTACAA
GTTTTTTATGAGCAAGTGTTTTCAAAATATGCAGGCTCAGATTTGTAACT
TTTTGAGCATAGCCCAAAAGTTTGCAGATAAAAGGCCGACTAAAAAGTTT
TCCGATCTCGCTGAACAATTTTTTCTATCAAGATTATTCAAATTAAGCAT
CATTatgtttatatatattttagaCCTTTAAGATCCTACAGTGTTCCTCA
GTAAAACCTACaaattgaaatctttgaaaataagcttttgaaactttttt
tatacTGTAGTAGGTTGAACTTGCAATTTGGTTttcgaacaaataaaaaa
aaaagatttggagaTTGTAGACTATCGTAAAAGAAGTCTGCAGTCTAAGG
TTCTTTTGTTTAGAGTACCCCAGTCTAGAAAAGAACGTTCTTCCCCCCCT
CCCCTTGCCATGACATTCGTGTAATGGTGTTGTTTTATAATCTTGTGCTT
TGGGCCTGTTGATCAACCTACTCCTACACTACTATTGActgtatattttt
tgaattattttctaaaactgCTATGTAGTGCCACTTAATTAAATTGTAAA
cactttattaaaaaacaaaataataacaaatttgAATGACTTGGATCTTA
CCTGGACACTGTCCTCGGCCCATTAAAACCTTTTTGGTGGGTTTAATTCA
CGAACCCATCTTCgttatttaattttctttatcttaAGTTAAATTAGTCG
AAATTTATTTGTTAAACCTCTTTAAAATCTTGTCTTTAGGATTTTCTTAC
TGAATAACGTCATCACAAATTGCACCGAAAATGGTTCAAATCTTTCCG

Coding sequence (CDS) from alignment at sc0000025:214830..220427+

>TCONS_00003092 ID=TCONS_00003092|Name=TCONS_00003092|organism=Clytia hemisphaerica|type=CDS|length=6285bp|location=Sequence derived from alignment at sc0000025:214830..220427+ (Clytia hemisphaerica)
ATGGGTGGCCGTCAATCCACTCAAAACATGGCGCACCGCCATCATCATTC
ACCCACCCAAGGCTCCTCAAGATACTCAACAGCCTCTTTAGATAATGGCA
GTCTTCAAGCCAGAGCTAGTGGAAGTATTGATTTTTCATCGTCAGATGGT
AGACCGGTCAGTCGTCGCAGGAGAAGGCGGGATCAGAACGACCAATTTAT
TGAAGCACATTCCCTGCCATCACATTTATTCCCATTTGTAACAGCTGAAA
TCAAGTGTCCAGTATGTAACAAGAGGATTGGCACTAGTGAAATTGAATCA
CACTTATTGGCATGTTTGTCCAAACCAAGGGTATCTTATAATGAGGATAC
ACTAAAGTCAGATGCTGGTGAATGTATCATTTGCTTTGATGACATGATTG
CAGGGGAACACATTGCTCGGCTGCCATGTCTGTGTATTTACCATAAAAAA
TGCTTGGACGAATGGTTTCAGCGGAACAGATGTTGTCCTGCTCATCCAGA
TCAAATACCACAAGAATATTCCACGGACGTCTCTTCAACATCCTCTTCAC
TTCCTCACATGGACGATACTGAGGGTGGTAGTCAGCAACAGGCTGAAGCC
ATTGCAGTGGCTAGCTCTGCACCTACGACATCCTCTAGAACTAGTAGTAG
ATTGGATGATAATGACCAGCCTTCATCTCCTCAAAGAGGTGCTGTTTCGA
ATTATTCGGAAGGTGTATTTCAACTGACTGATGATACGGAAGAAGATATT
AGAAATCCTTTTGCTAACCATAGCAACCAAAATGATGTAACAAACAATGA
AACAAATATGGCGGAAACTGCACATGATAGTAATAACGTAAATACCCATT
TAGAGAATCCAATGCCTGATATTAGCACAACTACGAATGCTCAAGGTGAG
CTTGATGAACCAGATACTACGAGCGAACGAAATGACAATTTACAACCTTC
AGCGACGTTAGCCGCCCAACCAGATCTGAATTTGAATGCCTCGACCTCCT
CTACTGGCTCAAACGGCGCTGTGGCTCCACTTGAAGACTGCGGATGTGCA
CCAGTGACGATTAGTAGTGGAGGGAAAGGAACCCAGAATATTGGAAAACA
CAGAACGGTTGTTCATGTAGACGATGGTTCCATACACGGCTCTCCTAATT
TGTGCAATGATGAAGAAATTGAACAACTGGCATCCAAAATAAAAACCATT
CTTGTTCAAGACAGTCCTAGAGGTGTTGGTACACGTACCGATTATGAGGC
AACTTGAATGGGTGGCCGTCAATCCACTCAAAACATGGCGCACCGCCATC
ATCATTCACCCACCCAAGGCTCCTCAAGATACTCAACAGCCTCTTTAGAT
AATGGCAGTCTTCAAGCCAGAGCTAGTGGAAGTATTGATTTTTCATCGTC
AGATGGTAGACCGGTCAGTCGTCGCAGGAGAAGGCGGGATCAGAACGACC
AATTTATTGAAGCACATTCCCTGCCATCACATTTATTCCCATTTGTAACA
GCTGAAATCAAGTGTCCAGTATGTAACAAGAGGATTGGCACTAGTGAAAT
TGAATCACACTTATTGGCATGTTTGTCCAAACCAAGGGTATCTTATAATG
AGGATACACTAAAGTCAGATGCTGGTGAATGTATCATTTGCTTTGATGAC
ATGATTGCAGGGGAACACATTGCTCGGCTGCCATGTCTGTGTATTTACCA
TAAAAAATGCTTGGACGAATGGTTTCAGCGGAACAGATGTTGTCCTGCTC
ATCCAGATCAAATACCACAAGAATATTCCACGGACGTCTCTTCAACATCC
TCTTCACTTCCTCACATGGACGATACTGAGGGTGGTAGTCAGCAACAGGC
TGAAGCCATTGCAGTGGCTAGCTCTGCACCTACGACATCCTCTAGAACTA
GTAGTAGATTGGATGATAATGACCAGCCTTCATCTCCTCAAAGAGGTGCT
GTTTCGAATTATTCGGAAGGTGTATTTCAACTGACTGATGATACGGAAGA
AGATATTAGAAATCCTTTTGCTAACCATAGCAACCAAAATGATGTAACAA
ACAATGAAACAAATATGGCGGAAACTGCACATGATAGTAATAACGTAAAT
ACCCATTTAGAGAATCCAATGCCTGATATTAGCACAACTACGAATGCTCA
AGGTGAGCTTGATGAACCAGATACTACGAGCGAACGAAATGACAATTTAC
AACCTTCAGCGACGTTAGCCGCCCAACCAGATCTGAATTTGAATGCCTCG
ACCTCCTCTACTGGCTCAAACGGCGCTGTGGCTCCACTTGAAGACTGCGG
ATGTGCACCAGTGACGATTAGTAGTGGAGGGAAAGGAACCCAGAATATTG
GAAAACACAGAACGGTTGTTCATGTAGACGATGGTTCCATACACGGCTCT
CCTAATTTGTGCAATGATGAAGAAATTGAACAACTGGCATCCAAAATAAA
AACCATTCTTGTTCAAGACAGTCCTAGAGGTGTTGGTACACGTACCGATT
ATGAGGCAACTTGAATGGGTGGCCGTCAATCCACTCAAAACATGGCGCAC
CGCCATCATCATTCACCCACCCAAGGCTCCTCAAGATACTCAACAGCCTC
TTTAGATAATGGCAGTCTTCAAGCCAGAGCTAGTGGAAGTATTGATTTTT
CATCGTCAGATGGTAGACCGGTCAGTCGTCGCAGGAGAAGGCGGGATCAG
AACGACCAATTTATTGAAGCACATTCCCTGCCATCACATTTATTCCCATT
TGTAACAGCTGAAATCAAGTGTCCAGTATGTAACAAGAGGATTGGCACTA
GTGAAATTGAATCACACTTATTGGCATGTTTGTCCAAACCAAGGGTATCT
TATAATGAGGATACACTAAAGTCAGATGCTGGTGAATGTATCATTTGCTT
TGATGACATGATTGCAGGGGAACACATTGCTCGGCTGCCATGTCTGTGTA
TTTACCATAAAAAATGCTTGGACGAATGGTTTCAGCGGAACAGATGTTGT
CCTGCTCATCCAGATCAAATACCACAAGAATATTCCACGGACGTCTCTTC
AACATCCTCTTCACTTCCTCACATGGACGATACTGAGGGTGGTAGTCAGC
AACAGGCTGAAGCCATTGCAGTGGCTAGCTCTGCACCTACGACATCCTCT
AGAACTAGTAGTAGATTGGATGATAATGACCAGCCTTCATCTCCTCAAAG
AGGTGCTGTTTCGAATTATTCGGAAGGTGTATTTCAACTGACTGATGATA
CGGAAGAAGATATTAGAAATCCTTTTGCTAACCATAGCAACCAAAATGAT
GTAACAAACAATGAAACAAATATGGCGGAAACTGCACATGATAGTAATAA
CGTAAATACCCATTTAGAGAATCCAATGCCTGATATTAGCACAACTACGA
ATGCTCAAGGTGAGCTTGATGAACCAGATACTACGAGCGAACGAAATGAC
AATTTACAACCTTCAGCGACGTTAGCCGCCCAACCAGATCTGAATTTGAA
TGCCTCGACCTCCTCTACTGGCTCAAACGGCGCTGTGGCTCCACTTGAAG
ACTGCGGATGTGCACCAGTGACGATTAGTAGTGGAGGGAAAGGAACCCAG
AATATTGGAAAACACAGAACGGTTGTTCATGTAGACGATGGTTCCATACA
CGGCTCTCCTAATTTGTGCAATGATGAAGAAATTGAACAACTGGCATCCA
AAATAAAAACCATTCTTGTTCAAGACAGTCCTAGAGGTGTTGGTACACGT
ACCGATTATGAGGCAACTTGAATGGGTGGCCGTCAATCCACTCAAAACAT
GGCGCACCGCCATCATCATTCACCCACCCAAGGCTCCTCAAGATACTCAA
CAGCCTCTTTAGATAATGGCAGTCTTCAAGCCAGAGCTAGTGGAAGTATT
GATTTTTCATCGTCAGATGGTAGACCGGTCAGTCGTCGCAGGAGAAGGCG
GGATCAGAACGACCAATTTATTGAAGCACATTCCCTGCCATCACATTTAT
TCCCATTTGTAACAGCTGAAATCAAGTGTCCAGTATGTAACAAGAGGATT
GGCACTAGTGAAATTGAATCACACTTATTGGCATGTTTGTCCAAACCAAG
GGTATCTTATAATGAGGATACACTAAAGTCAGATGCTGGTGAATGTATCA
TTTGCTTTGATGACATGATTGCAGGGGAACACATTGCTCGGCTGCCATGT
CTGTGTATTTACCATAAAAAATGCTTGGACGAATGGTTTCAGCGGAACAG
ATGTTGTCCTGCTCATCCAGATCAAATACCACAAGAATATTCCACGGACG
TCTCTTCAACATCCTCTTCACTTCCTCACATGGACGATACTGAGGGTGGT
AGTCAGCAACAGGCTGAAGCCATTGCAGTGGCTAGCTCTGCACCTACGAC
ATCCTCTAGAACTAGTAGTAGATTGGATGATAATGACCAGCCTTCATCTC
CTCAAAGAGGTGCTGTTTCGAATTATTCGGAAGGTGTATTTCAACTGACT
GATGATACGGAAGAAGATATTAGAAATCCTTTTGCTAACCATAGCAACCA
AAATGATGTAACAAACAATGAAACAAATATGGCGGAAACTGCACATGATA
GTAATAACGTAAATACCCATTTAGAGAATCCAATGCCTGATATTAGCACA
ACTACGAATGCTCAAGGTGAGCTTGATGAACCAGATACTACGAGCGAACG
AAATGACAATTTACAACCTTCAGCGACGTTAGCCGCCCAACCAGATCTGA
ATTTGAATGCCTCGACCTCCTCTACTGGCTCAAACGGCGCTGTGGCTCCA
CTTGAAGACTGCGGATGTGCACCAGTGACGATTAGTAGTGGAGGGAAAGG
AACCCAGAATATTGGAAAACACAGAACGGTTGTTCATGTAGACGATGGTT
CCATACACGGCTCTCCTAATTTGTGCAATGATGAAGAAATTGAACAACTG
GCATCCAAAATAAAAACCATTCTTGTTCAAGACAGTCCTAGAGGTGTTGG
TACACGTACCGATTATGAGGCAACTTGAATGGGTGGCCGTCAATCCACTC
AAAACATGGCGCACCGCCATCATCATTCACCCACCCAAGGCTCCTCAAGA
TACTCAACAGCCTCTTTAGATAATGGCAGTCTTCAAGCCAGAGCTAGTGG
AAGTATTGATTTTTCATCGTCAGATGGTAGACCGGTCAGTCGTCGCAGGA
GAAGGCGGGATCAGAACGACCAATTTATTGAAGCACATTCCCTGCCATCA
CATTTATTCCCATTTGTAACAGCTGAAATCAAGTGTCCAGTATGTAACAA
GAGGATTGGCACTAGTGAAATTGAATCACACTTATTGGCATGTTTGTCCA
AACCAAGGGTATCTTATAATGAGGATACACTAAAGTCAGATGCTGGTGAA
TGTATCATTTGCTTTGATGACATGATTGCAGGGGAACACATTGCTCGGCT
GCCATGTCTGTGTATTTACCATAAAAAATGCTTGGACGAATGGTTTCAGC
GGAACAGATGTTGTCCTGCTCATCCAGATCAAATACCACAAGAATATTCC
ACGGACGTCTCTTCAACATCCTCTTCACTTCCTCACATGGACGATACTGA
GGGTGGTAGTCAGCAACAGGCTGAAGCCATTGCAGTGGCTAGCTCTGCAC
CTACGACATCCTCTAGAACTAGTAGTAGATTGGATGATAATGACCAGCCT
TCATCTCCTCAAAGAGGTGCTGTTTCGAATTATTCGGAAGGTGTATTTCA
ACTGACTGATGATACGGAAGAAGATATTAGAAATCCTTTTGCTAACCATA
GCAACCAAAATGATGTAACAAACAATGAAACAAATATGGCGGAAACTGCA
CATGATAGTAATAACGTAAATACCCATTTAGAGAATCCAATGCCTGATAT
TAGCACAACTACGAATGCTCAAGGTGAGCTTGATGAACCAGATACTACGA
GCGAACGAAATGACAATTTACAACCTTCAGCGACGTTAGCCGCCCAACCA
GATCTGAATTTGAATGCCTCGACCTCCTCTACTGGCTCAAACGGCGCTGT
GGCTCCACTTGAAGACTGCGGATGTGCACCAGTGACGATTAGTAGTGGAG
GGAAAGGAACCCAGAATATTGGAAAACACAGAACGGTTGTTCATGTAGAC
GATGGTTCCATACACGGCTCTCCTAATTTGTGCAATGATGAAGAAATTGA
ACAACTGGCATCCAAAATAAAAACCATTCTTGTTCAAGACAGTCCTAGAG
GTGTTGGTACACGTACCGATTATGAGGCAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001715XLOC_001715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003092-exon-sc0000025-1491911889:214830..215307TCONS_00003092-exon-sc0000025-1491911889:214830..215307Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1510915933:214830..215307TCONS_00003092-exon-sc0000025-1510915933:214830..215307Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1575043694:214830..215307TCONS_00003092-exon-sc0000025-1575043694:214830..215307Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1491911889:216047..216145TCONS_00003092-exon-sc0000025-1491911889:216047..216145Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1510915933:216047..216145TCONS_00003092-exon-sc0000025-1510915933:216047..216145Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1575043694:216047..216145TCONS_00003092-exon-sc0000025-1575043694:216047..216145Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1491911889:216495..216554TCONS_00003092-exon-sc0000025-1491911889:216495..216554Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1510915933:216495..216554TCONS_00003092-exon-sc0000025-1510915933:216495..216554Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1575043694:216495..216554TCONS_00003092-exon-sc0000025-1575043694:216495..216554Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1491911889:217139..217184TCONS_00003092-exon-sc0000025-1491911889:217139..217184Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1510915933:217139..217184TCONS_00003092-exon-sc0000025-1510915933:217139..217184Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1575043694:217139..217184TCONS_00003092-exon-sc0000025-1575043694:217139..217184Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1491911889:217705..220427TCONS_00003092-exon-sc0000025-1491911889:217705..220427Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1510915933:217705..220427TCONS_00003092-exon-sc0000025-1510915933:217705..220427Clytia hemisphaericaexon
TCONS_00003092-exon-sc0000025-1575043694:217705..220427TCONS_00003092-exon-sc0000025-1575043694:217705..220427Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003092-proteinTCONS_00003092-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:214830..220427 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.2982	9.71772	5.49082	4.53601	23.3307	17.2419	15.109	15.948	8.31339	11.0156	9.71391	6.67378	9.81593	8.10916	5.60821	8.10126	7.15601	7.62499	7.98628	10.1223	7.93976	8.10134	15.6758	15.5587	14.1664	14.5572	11.8841	10.718	20.5202	19.4637
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
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BLAST of TCONS_00003092 vs. Swiss-Prot (Human)
Match: ZNRF2 (E3 ubiquitin-protein ligase ZNRF2 OS=Homo sapiens GN=ZNRF2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.538e-36
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:  445 SLPSHLFPFVTAEIKCPVCNKRIGTSEIESHLLACLSKPRVSYNEDTLKSDAGECIICFDDMIAGEHIARLPCLCIYHKKCLDEWFQRNRCCPAHP 732
            SLP+HL P +    KCPVC+K + + E++ HL+ CL+KPR++YNED L  DAGEC IC +++  G+ IARLPCLCIYHK C+DEWF+ NR CP HP
Sbjct:  145 SLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP 240
The following BLAST results are available for this feature:
BLAST of TCONS_00003092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNRF24.538e-3658.33E3 ubiquitin-protein ligase ZNRF2 OS=Homo sapiens ... [more]
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