TCONS_00003092-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003092-protein
Unique NameTCONS_00003092-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003092-protein ID=TCONS_00003092-protein|Name=TCONS_00003092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MGGRQSTQNMAHRHHHSPTQGSSRYSTASLDNGSLQARASGSIDFSSSDG
RPVSRRRRRRDQNDQFIEAHSLPSHLFPFVTAEIKCPVCNKRIGTSEIES
HLLACLSKPRVSYNEDTLKSDAGECIICFDDMIAGEHIARLPCLCIYHKK
CLDEWFQRNRCCPAHPDQIPQEYSTDVSSTSSSLPHMDDTEGGSQQQAEA
IAVASSAPTTSSRTSSRLDDNDQPSSPQRGAVSNYSEGVFQLTDDTEEDI
RNPFANHSNQNDVTNNETNMAETAHDSNNVNTHLENPMPDISTTTNAQGE
LDEPDTTSERNDNLQPSATLAAQPDLNLNASTSSTGSNGAVAPLEDCGCA
PVTISSGGKGTQNIGKHRTVVHVDDGSIHGSPNLCNDEEIEQLASKIKTI
LVQDSPRGVGTRTDYEAT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001715XLOC_001715Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003092TCONS_00003092Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 124..163
e-value: 1.2E-7
score: 31.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 125..165
score: 9.317
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 124..163
e-value: 9.81175E-4
score: 35.8844
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 103..173
e-value: 3.3E-11
score: 41.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 318..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..313
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 121..165

Blast
[Close]
BLAST of TCONS_00003092-protein vs. Swiss-Prot (Human)
Match: ZNRF2 (E3 ubiquitin-protein ligase ZNRF2 OS=Homo sapiens GN=ZNRF2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.069e-39
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0 
Query:   71 SLPSHLFPFVTAEIKCPVCNKRIGTSEIESHLLACLSKPRVSYNEDTLKSDAGECIICFDDMIAGEHIARLPCLCIYHKKCLDEWFQRNRCCPAHP 166
            SLP+HL P +    KCPVC+K + + E++ HL+ CL+KPR++YNED L  DAGEC IC +++  G+ IARLPCLCIYHK C+DEWF+ NR CP HP
Sbjct:  145 SLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNRSCPEHP 240
The following BLAST results are available for this feature:
BLAST of TCONS_00003092-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNRF23.069e-3958.33E3 ubiquitin-protein ligase ZNRF2 OS=Homo sapiens ... [more]
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