TCONS_00003087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003087
Unique NameTCONS_00003087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003087 ID=TCONS_00003087|Name=TCONS_00003087|organism=Clytia hemisphaerica|type=transcript|length=582bp
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGCCGCTGCAGCCATTACCAACCCACCAATCACTGGTACCACA
CCACCACCAGTCGAATGTCCAAACTCCTTGTGTAAAGGAAAAGCTGATGG
AAACTTCGATTACTACTACTATGGTCAATACAGACGTAACTACTTTGTCC
AATGCTCCGGTGGATTGGCTTACTGTCAAGCTTGTTTCCCACTCTCTTTG
GAATTCAGCGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTG
TGTCACCACACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACA
AATGCCCCCATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCT
AATGACCGTCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCAT
CGCCTGTCCAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGT
ACGAGGGCAAATACCTCACCGAGCCATCCCAA
Run BLAST on NCBI

transcript from alignment at sc0000025:168522..174895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003087 ID=TCONS_00003087|Name=TCONS_00003087|organism=Clytia hemisphaerica|type=transcript|length=6374bp|location=Sequence derived from alignment at sc0000025:168522..174895+ (Clytia hemisphaerica)
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGGTAAGttcaaatgaaatatttttctattcttCAATTTCCTT
CTTGGTTTCTATAAGATTTTCCTTGCTCCTTATTATTTCACGAAGTTATT
GTAATCAATTGAACACAACTACAGTTTCTTACTAAGACGATCACTAGTTT
GTTATAGTCAGATTTCGTTCTAAACCAAAGTGTGACCGAACATCACCAAA
ACGATATGAAGATCTAGCTTATTTGTATATTCACTGTACTGTCGTGAGTC
TAGACCTTATTATTTAAAATTGTTCGTTTCGCCTTATAGCCGCTGCAGCC
ATTACCAACCCACCAATTACTGGTACCACACCACCACCAGTCGAATGTCC
AAACTCCTTGTGCAAAGGAAAAGCTGATGGAAACTTCGATTACTATTACT
ATGGTCAATACAGACGTAACTACTTTGTCCAATGTTCCGGAGGATTGGCT
TACTGCCAAGCTTGTTTCCCACTCTCTTTGGAATTCAGCGAAAAATGCAA
CCAATGTTTGTACAGCAAACACGACGATTGTGTCACCACACAAAAATGGC
ACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCCCATTACGGACCC
CACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCGTCAATACGTTGC
CTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTCCAGGAAACTTGA
AATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGCAAATACCTCACC
GAGCCATCCCATTAAATTTTGTGCTCAAAAGTCAAGAATGGAAATACATT
TTCCGTTAAAAgcgaaagaaataaaaacgaaacttgtaattatttttaca
tacaATTTTAATTTATCTTTCTTTATCTTTCTTAGCCTTTCTTATCTTTC
TTAGCCTTTCTATTCTTTAGCTTAGCTATTTTCTTTCTACTTTGTAATTT
TCTACTGCATACTGTAAAATACTTTACTtcatattttcttgaaatttctt
ggaaaaatgaTGACTAAGAATCATCTACAAAACataaatcaaaacatttc
tCTATTTCTcttccccccgtttattagccctattcatactaggctttcaG
GTGCGGTTCAAAAGTGGGGGGGGGCTGTTCCTGTACTgtccttaactttt
gatctagttggtctttttggatgaaatttccCCATATATTCAAATTGCCC
AGTTTATAAGACACAGTTTATACCTGAGtgttacacacttttttttttat
aagaatggtgtaaatctatttcatcatggatattcttaacttttttggaa
aatcatcttaaaatattcttacagcacattcttaggttaggacagttagg
atcctaattcatactagatttaacatttagtaaattcgtctcaagcataa
aatgacacttttgtaaaaggagtgaatctaacttggggataatttataat
ttataattgaaaatgctcttaaaatggcattcttagctttagtagcataa
ttccatgatggtgatattcttagcattattcttagttttttggccatttt
catcatggacattcttataaagtgtattcttattaaaaaaatgcatGTAG
TGTTCAGGAGAGAGTTTATACCTATCTAACCAAAAATATTAAGGACGCTC
CTTAACTAGAGTCTACTTTGGCATTCTGTCCAATGAAGTAGACTAGGAAA
GGTAAGCGAGGTCGgtgttttacaaaaaaacgtaaGAGTATATGATATTT
TTCGGTGGTTTCTGAGATAAACAAAGCCAAAACCCTACATTCTCTCCGAG
TATCTATGGTGAATTGTGAATTGTTCTTAGCCATCGAGCGAGGTCAAACT
ATATTAATGTTACTTAATTGCATCAATACAAGAGTATCTGACTTCTTTAC
AGGAGCTTTCTTAGACTGAAGGTCTCCTAGATTAATGTTTTCAATACCTT
CACCGAAACGACCGCGTCGTTGAAGAAGGTTGATTCATGATATGATCCTT
ACACCCCAGTTTTTGCcataaataatgaaaattttacctttaataatttt
gtttcaaatttggCACAACTGACTAGTAAAGACCGCGGTCTGTCCGATGA
AAATATTACGTCacaaatatcatgaatagacaagtgttttttgtataaaa
agaaCTTACAAGAGAAGAACTGTCTTTGACTTCCCATATTTTCTTGACGG
TCTCGCTGTttctgaaaaataagaaaatctgtGAAGAGATATGAGTATCT
GGCGAGATTTACAAGTTACCTTATCAcgcgaatattactaggcaagtatt
caacggccttgagaTTTGGACGATCTGAAATTGACACAGcattttttctg
ctttttcaaggaaacggcggctggttttaataaaaagggtttttattaat
acgaaatttttcaattcgtgttaataaaatgactagtaatattcgtgtaa
taaggtaattgATTAAAATGATATATCATGCACTGATATTTTGCAGAAAC
TAACAAGCTATTTTTCGGCtctaaagataaaaaatatgTATACACAAATT
ACTTCGATTATATAATTTTCATAGCAAAGATGTTGAGTCCGGGCTCAGAC
AGAAATCAACTAAAATAAGCCTTGTTTTTCATGAAAAGGAACTTAAAAGT
TCTGTGTTGATTTTGTGCTCCGTTTTTCTTGTGATTGTTTTTTCAAACGT
CATCTTTAAGGCTTGTGgacacaagaagtttttttcgcgttgctgcaatg
caacatgctccattccACCAACACAAGAGAAATAGTGCGTGTTNgcgttg
gtgcaatgcaacatgctccattccAACACAAGAGAAAAAGttcgtgtccc
atggtttcttttaatgtttcatgggacaaaaagtgagggaaataaccaaa
acaaacgcTGATTTTGTAAGTGAGAGAtacacaaatgttattaaaagtgt
tatcgatttcacttttattggtaaaaagaaaaatggggtgggacacgaga
aagcgtttcaggttggtgggatggaacatgttgcattgcaccaacgcgaa
aaaaacttctcgtgtccccaagcctttatgGACGCCTTTTGGAAAATAAT
CAAGTCGTATCAATAGTTTGGAAAATATCTCTTggtttctcaaatttttc
tagGTTATCCAGATAAACCCAAAGACATCAAAAAGTCTTCATAAAGTCAC
GTACAAGTGAGAGAAACTGCCCTTTTTTGTTGACAGTTTCATTTCgtctg
aaaaattatttcataagaatatcaagAAGTTACCCTATATTTTCCAAATA
GTTGAAATAGGTTTGATCTCAGATTTGATAAAGAAAAGCAAATCAAAATA
CTTACTTTGCTTCATTCCAACAAATTGGCTGACAAGTCACCTTTAATTGC
ACATGGATAATTTTATAAGATTGCATCATCATCCCATACAACTTGATTCG
AATCTTTTCCATTAAGTGTCTAATTTGATTGGCTACTTGAAATcgattct
ttttgttttgattgatccTCTGAAGGAGAATGAAATATACAAGCGTTTTG
ATTGGCTTATCTTTAGAAAGCTACCAAAATATTCGATTTCAGAACCGGAA
ACGCGTTTCTCCCGCGTTTACAGACTAGTCAACTCGGCTTTTCTCTACAA
ACAGTAGAACCTCCGCACGCTTTAAAAGGACAAACATTTATCTGATactc
cgatggcgtattggcggccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNggcgaaattccgtaatgtatttcttccagatgttgataatttt
cccgaccttcagagctttagcgtgtcggaagaaaatttctacatcgggtg
ccagataagacAAACATCTGATCTTTACTCCTCAtcactttgattgattt
tttcgTCCGGTGAACAGAAATCTGGGGTTAACTTGTATACATTGTATTTT
CCGTTGGAACCCTTTGTATAGATTACGTTTGATGTCGTTAAAAGGAAACG
TTGAGGTCgtccttttgtttttattgttataTAAGCGTTCTATTGTATCG
GAGGGATgtattttgctataaaaaggGTTTGAAGGTTCAGTAAAAATCAT
CAAGTTCACTTGGGACAAACAAGAACCAAACACaacttgaacaaaaaaaa
agaaaatcttcttttacttttcaaacATACAAGATGAAGTGTATCATTGC
TTTCGCCCTTGTCGCTGGTAAgttcaaataaaatatttttctatttcgAT
AAGATTCTTCTTGCTTCTTGCTATCTATAAGCTCACTTTTCATAGGCAGT
CACTCAATCAGGACGACCGTTAGTTGGTGGTTTGGTTTCGTTCTTCACTA
AAATGTGGCTTAAATTACTAAGGCAGTATTCTTATTCAAGCCACTTTACT
GACAATAATTgacaatgtttttttatattagaccaaattatataagaaca
taaagaaacatggccaaaatgtttaagttaagaacattttaaggctttgt
ggactctaaacggccaatttctttcttttttaatggacagaaatgttcac
aaaatggtgaaaatttttcttaggcttaaaactcaaaaacttaggaacat
ccgaaggcttcaaaagtttttttatttaaaattgttcGTTTCGCCTTATA
GCCGCTGCAGCCATTACCAACCCACCAATCACTGGTACCACACCACCACC
AGTCGAATGTCCAAACTCCTTGTGTAAAGGAAAAGCTGATGGAAACTTCG
ATTACTACTACTATGGTCAATACAGACGTAACTACTTTGTCCAATGCTCC
GGTGGATTGGCTTACTGTCAAGCTTGTTTCCCACTCTCTTTGGAATTCAG
CGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTGTGTCACCA
CACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCC
CATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCG
TCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTC
CAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGC
AAATACCTCACCGAGCCATCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001712XLOC_001712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003087-exon-sc0000025-1491911889:168522..168630TCONS_00003087-exon-sc0000025-1491911889:168522..168630Clytia hemisphaericaexon
TCONS_00003087-exon-sc0000025-1510915933:168522..168630TCONS_00003087-exon-sc0000025-1510915933:168522..168630Clytia hemisphaericaexon
TCONS_00003087-exon-sc0000025-1575043694:168522..168630TCONS_00003087-exon-sc0000025-1575043694:168522..168630Clytia hemisphaericaexon
TCONS_00003087-exon-sc0000025-1491911889:174423..174895TCONS_00003087-exon-sc0000025-1491911889:174423..174895Clytia hemisphaericaexon
TCONS_00003087-exon-sc0000025-1510915933:174423..174895TCONS_00003087-exon-sc0000025-1510915933:174423..174895Clytia hemisphaericaexon
TCONS_00003087-exon-sc0000025-1575043694:174423..174895TCONS_00003087-exon-sc0000025-1575043694:174423..174895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:168522..174895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.14782	0.305344	0.0760275	0	0	0.111976	0	0	0	0	0	4.78571	50.4186	11.9316	5.96844	0	0	0.0505545	0.126325	0	0	0	0.0512895	0	0.187546	0.0652105	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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