XLOC_001712 (gene) - C. hemisphaerica

Overview
NameXLOC_001712
Unique NameXLOC_001712
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000025:168522..174895+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001712 ID=XLOC_001712|Name=XLOC_001712|organism=Clytia hemisphaerica|type=gene|length=6374bp|location=Sequence derived from alignment at sc0000025:168522..174895+ (Clytia hemisphaerica)
CTTGGGACAAACAAGAACCAAACACAACTTGaacacaaaaaaagaaaatt
ttcttttacttttcaaacATACAAGATGAAGTGTATCATTGCTTTCGCCC
TTGTCGCTGGTAAGttcaaatgaaatatttttctattcttCAATTTCCTT
CTTGGTTTCTATAAGATTTTCCTTGCTCCTTATTATTTCACGAAGTTATT
GTAATCAATTGAACACAACTACAGTTTCTTACTAAGACGATCACTAGTTT
GTTATAGTCAGATTTCGTTCTAAACCAAAGTGTGACCGAACATCACCAAA
ACGATATGAAGATCTAGCTTATTTGTATATTCACTGTACTGTCGTGAGTC
TAGACCTTATTATTTAAAATTGTTCGTTTCGCCTTATAGCCGCTGCAGCC
ATTACCAACCCACCAATTACTGGTACCACACCACCACCAGTCGAATGTCC
AAACTCCTTGTGCAAAGGAAAAGCTGATGGAAACTTCGATTACTATTACT
ATGGTCAATACAGACGTAACTACTTTGTCCAATGTTCCGGAGGATTGGCT
TACTGCCAAGCTTGTTTCCCACTCTCTTTGGAATTCAGCGAAAAATGCAA
CCAATGTTTGTACAGCAAACACGACGATTGTGTCACCACACAAAAATGGC
ACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCCCATTACGGACCC
CACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCGTCAATACGTTGC
CTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTCCAGGAAACTTGA
AATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGCAAATACCTCACC
GAGCCATCCCATTAAATTTTGTGCTCAAAAGTCAAGAATGGAAATACATT
TTCCGTTAAAAgcgaaagaaataaaaacgaaacttgtaattatttttaca
tacaATTTTAATTTATCTTTCTTTATCTTTCTTAGCCTTTCTTATCTTTC
TTAGCCTTTCTATTCTTTAGCTTAGCTATTTTCTTTCTACTTTGTAATTT
TCTACTGCATACTGTAAAATACTTTACTtcatattttcttgaaatttctt
ggaaaaatgaTGACTAAGAATCATCTACAAAACataaatcaaaacatttc
tCTATTTCTcttccccccgtttattagccctattcatactaggctttcaG
GTGCGGTTCAAAAGTGGGGGGGGGCTGTTCCTGTACTgtccttaactttt
gatctagttggtctttttggatgaaatttccCCATATATTCAAATTGCCC
AGTTTATAAGACACAGTTTATACCTGAGtgttacacacttttttttttat
aagaatggtgtaaatctatttcatcatggatattcttaacttttttggaa
aatcatcttaaaatattcttacagcacattcttaggttaggacagttagg
atcctaattcatactagatttaacatttagtaaattcgtctcaagcataa
aatgacacttttgtaaaaggagtgaatctaacttggggataatttataat
ttataattgaaaatgctcttaaaatggcattcttagctttagtagcataa
ttccatgatggtgatattcttagcattattcttagttttttggccatttt
catcatggacattcttataaagtgtattcttattaaaaaaatgcatGTAG
TGTTCAGGAGAGAGTTTATACCTATCTAACCAAAAATATTAAGGACGCTC
CTTAACTAGAGTCTACTTTGGCATTCTGTCCAATGAAGTAGACTAGGAAA
GGTAAGCGAGGTCGgtgttttacaaaaaaacgtaaGAGTATATGATATTT
TTCGGTGGTTTCTGAGATAAACAAAGCCAAAACCCTACATTCTCTCCGAG
TATCTATGGTGAATTGTGAATTGTTCTTAGCCATCGAGCGAGGTCAAACT
ATATTAATGTTACTTAATTGCATCAATACAAGAGTATCTGACTTCTTTAC
AGGAGCTTTCTTAGACTGAAGGTCTCCTAGATTAATGTTTTCAATACCTT
CACCGAAACGACCGCGTCGTTGAAGAAGGTTGATTCATGATATGATCCTT
ACACCCCAGTTTTTGCcataaataatgaaaattttacctttaataatttt
gtttcaaatttggCACAACTGACTAGTAAAGACCGCGGTCTGTCCGATGA
AAATATTACGTCacaaatatcatgaatagacaagtgttttttgtataaaa
agaaCTTACAAGAGAAGAACTGTCTTTGACTTCCCATATTTTCTTGACGG
TCTCGCTGTttctgaaaaataagaaaatctgtGAAGAGATATGAGTATCT
GGCGAGATTTACAAGTTACCTTATCAcgcgaatattactaggcaagtatt
caacggccttgagaTTTGGACGATCTGAAATTGACACAGcattttttctg
ctttttcaaggaaacggcggctggttttaataaaaagggtttttattaat
acgaaatttttcaattcgtgttaataaaatgactagtaatattcgtgtaa
taaggtaattgATTAAAATGATATATCATGCACTGATATTTTGCAGAAAC
TAACAAGCTATTTTTCGGCtctaaagataaaaaatatgTATACACAAATT
ACTTCGATTATATAATTTTCATAGCAAAGATGTTGAGTCCGGGCTCAGAC
AGAAATCAACTAAAATAAGCCTTGTTTTTCATGAAAAGGAACTTAAAAGT
TCTGTGTTGATTTTGTGCTCCGTTTTTCTTGTGATTGTTTTTTCAAACGT
CATCTTTAAGGCTTGTGgacacaagaagtttttttcgcgttgctgcaatg
caacatgctccattccACCAACACAAGAGAAATAGTGCGTGTTNgcgttg
gtgcaatgcaacatgctccattccAACACAAGAGAAAAAGttcgtgtccc
atggtttcttttaatgtttcatgggacaaaaagtgagggaaataaccaaa
acaaacgcTGATTTTGTAAGTGAGAGAtacacaaatgttattaaaagtgt
tatcgatttcacttttattggtaaaaagaaaaatggggtgggacacgaga
aagcgtttcaggttggtgggatggaacatgttgcattgcaccaacgcgaa
aaaaacttctcgtgtccccaagcctttatgGACGCCTTTTGGAAAATAAT
CAAGTCGTATCAATAGTTTGGAAAATATCTCTTggtttctcaaatttttc
tagGTTATCCAGATAAACCCAAAGACATCAAAAAGTCTTCATAAAGTCAC
GTACAAGTGAGAGAAACTGCCCTTTTTTGTTGACAGTTTCATTTCgtctg
aaaaattatttcataagaatatcaagAAGTTACCCTATATTTTCCAAATA
GTTGAAATAGGTTTGATCTCAGATTTGATAAAGAAAAGCAAATCAAAATA
CTTACTTTGCTTCATTCCAACAAATTGGCTGACAAGTCACCTTTAATTGC
ACATGGATAATTTTATAAGATTGCATCATCATCCCATACAACTTGATTCG
AATCTTTTCCATTAAGTGTCTAATTTGATTGGCTACTTGAAATcgattct
ttttgttttgattgatccTCTGAAGGAGAATGAAATATACAAGCGTTTTG
ATTGGCTTATCTTTAGAAAGCTACCAAAATATTCGATTTCAGAACCGGAA
ACGCGTTTCTCCCGCGTTTACAGACTAGTCAACTCGGCTTTTCTCTACAA
ACAGTAGAACCTCCGCACGCTTTAAAAGGACAAACATTTATCTGATactc
cgatggcgtattggcggccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNggcgaaattccgtaatgtatttcttccagatgttgataatttt
cccgaccttcagagctttagcgtgtcggaagaaaatttctacatcgggtg
ccagataagacAAACATCTGATCTTTACTCCTCAtcactttgattgattt
tttcgTCCGGTGAACAGAAATCTGGGGTTAACTTGTATACATTGTATTTT
CCGTTGGAACCCTTTGTATAGATTACGTTTGATGTCGTTAAAAGGAAACG
TTGAGGTCgtccttttgtttttattgttataTAAGCGTTCTATTGTATCG
GAGGGATgtattttgctataaaaaggGTTTGAAGGTTCAGTAAAAATCAT
CAAGTTCACTTGGGACAAACAAGAACCAAACACaacttgaacaaaaaaaa
agaaaatcttcttttacttttcaaacATACAAGATGAAGTGTATCATTGC
TTTCGCCCTTGTCGCTGGTAAgttcaaataaaatatttttctatttcgAT
AAGATTCTTCTTGCTTCTTGCTATCTATAAGCTCACTTTTCATAGGCAGT
CACTCAATCAGGACGACCGTTAGTTGGTGGTTTGGTTTCGTTCTTCACTA
AAATGTGGCTTAAATTACTAAGGCAGTATTCTTATTCAAGCCACTTTACT
GACAATAATTgacaatgtttttttatattagaccaaattatataagaaca
taaagaaacatggccaaaatgtttaagttaagaacattttaaggctttgt
ggactctaaacggccaatttctttcttttttaatggacagaaatgttcac
aaaatggtgaaaatttttcttaggcttaaaactcaaaaacttaggaacat
ccgaaggcttcaaaagtttttttatttaaaattgttcGTTTCGCCTTATA
GCCGCTGCAGCCATTACCAACCCACCAATCACTGGTACCACACCACCACC
AGTCGAATGTCCAAACTCCTTGTGTAAAGGAAAAGCTGATGGAAACTTCG
ATTACTACTACTATGGTCAATACAGACGTAACTACTTTGTCCAATGCTCC
GGTGGATTGGCTTACTGTCAAGCTTGTTTCCCACTCTCTTTGGAATTCAG
CGAAAAATGCAACCAATGTTTGTACAGCAAACACGACGATTGTGTCACCA
CACAAAAATGGCACCCAGCCACCACCTTCTCCTGTCCAGACAAATGCCCC
CATTACGGACCCCACTTCAGTGGAAACGTTGAAGACCCAGCTAATGACCG
TCAATACGTTGCCTGCTGGAAGGGAGTTACTGTTGGATGCATCGCCTGTC
CAGGAAACTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAGGGC
AAATACCTCACCGAGCCATCCCAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003086TCONS_00003086Clytia hemisphaericatranscript
TCONS_00003087TCONS_00003087Clytia hemisphaericatranscript
TCONS_00003088TCONS_00003088Clytia hemisphaericatranscript
TCONS_00003089TCONS_00003089Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003086-proteinTCONS_00003086-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:168522..174895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.24	0.41	0.92	0.34	0.84	0.53	0.34	0	0.63	0.26	0.38	0.75	13.71	183.23	49.63	120.39	1.03	0.19	0.3	0.36	0.35	0.29	0.07	0.3	0.61	1.36	0.13	0	0.14	0.07