TCONS_00003073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003073
Unique NameTCONS_00003073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003073 ID=TCONS_00003073|Name=TCONS_00003073|organism=Clytia hemisphaerica|type=transcript|length=1382bp
NGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAAAAAGCAGA
ACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACAACTTCAAG
ATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAAAACgtatg
aagaaCAGAGAGGAAAGGGAAAAGGAATATTTTAGCAACGATTTCAACCC
TACCAATGTGTTCATGCAAGAAGATGAAAACTTCGAAGAACTATACGATA
AGGGTTTCACGACCGCACAACTAACAATGGTGGAAGAAAACGATAAATTT
GTCAAACAACGAGAAGAAGAAATTTCACACATTGTTCAATCTATAGGCGA
CTTGAATACCATATTCAAAGATCTATCAATCCTGATTGTGGATCAGGGCA
CGATATTGGATAGAATAGATTATAATGTGGAGCAAGCGTCAGTACAAGTC
GAAAAAGGATATCAACAGCTGCAAAAGGCTGAGAAACATCAAAAGAAGAA
TCGTAAAATGATGTGTATTTTAGTTTTGAGTGTCATTCTAACCATCATGA
TCATCATTCTTGTGCTCACCAAAAGCTGATAGTGGTTTTATTGTTTTCTA
GGAAATATTCATCTATTTATTTGCCCCTTTTTACCACGAATTAGCCCAAT
TTATGCTTTTGATATGCATTTTAGCTTGGACGAACTAGAATCTCACACGT
GACACCTCTGACACCGTTTGAAATTTCAGTGTAGTTGGTCAAAACTACAG
AACGAAGAATAATTTGGAAGGGTTGAAAGTGGTTTAATAAAGTTTGACAT
CAGTCATTAGCTTGGCTTTTCTCATAcatgtttataagaacatttggaCA
ATTGTCATAGAGATAAGCGCATCCAGGCTCAGACCAAATTAAGACGTTGT
GATAAAGAACTTTTAACAGTTTTTAACGGATTGCGAGAGTATTAACGTAG
AAAATATAATAACAATTCCATTCCAGTCTTGCCAAGCCTAAAACAATTTC
CTTTTTCGGGGTTAGTTCTTATTTTAAAAGATAATTTTGGATGCCATTTT
GTATATTTAGTTAGATGTTATTGTTAAATTGCATCATCTTTCGTttcatt
ttagaaaatttttgaatttaattttgctatTTGCAATATCTATTGATaat
tgattatcttttctcGGACACTTATTTTAATGCTGAATAAAGCCTAATCT
TACTTTCGGTCAACTGAGAATACATCAATGAACATTTTTATATGGGCACA
GCTGCTATCATTTTtcgtttaaaatatatttttgagtaacACTGCGAACA
ATGAATTATCCATCATCCttgaatttctattttatttattattatattCA
GCTATTGtaaatattataattttttcggTCCG
Run BLAST on NCBI

protein sequence of TCONS_00003073-protein

>TCONS_00003073-protein ID=TCONS_00003073-protein|Name=TCONS_00003073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
XCIQSIQGRSMGCQKAERQIIKNVVSSLASQLQDLSFNFKKDQSKYLKRM
KNREEREKEYFSNDFNPTNVFMQEDENFEELYDKGFTTAQLTMVEENDKF
VKQREEEISHIVQSIGDLNTIFKDLSILIVDQGTILDRIDYNVEQASVQV
EKGYQQLQKAEKHQKKNRKMMCILVLSVILTIMIIILVLTKS
Run BLAST on NCBI

transcript from alignment at sc0000025:28015..33475+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003073 ID=TCONS_00003073|Name=TCONS_00003073|organism=Clytia hemisphaerica|type=transcript|length=5461bp|location=Sequence derived from alignment at sc0000025:28015..33475+ (Clytia hemisphaerica)
NGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAAAAAGCAGA ACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACAACTTCAAG ATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAAAACGTGAG TTTTATTATTAATTGACATAATTTTCTGATACTCATATGACTTAGAAATT TCCTTGGTCTATATTTTAGATGATCTCTGTCAAAAAGGATTTCAAAGTAG ACCTTGTCATGTCTGCAAATGGCTGGTTCTATAATGAATTCAAAATTGCT ATGCTAATTTTAACTGTTTATCAACAATTCTCATTAGGATTTAGCCTTTA GTCATTGTCACTTTAGTTTTATCGCTTTATTAGTGTGGATCGGTCTAAAG TCAGATTCTCTACTCTTTTTactttaaggtatgaagaaCAGAGAGGAAAG GGAAAAGGAATATTTTAGCAACGATTTCAACCCTACCAATGTGTTCATGC AAGAAGATGAAAACTTCGAAGAACTATACGATAAGGTTTGTATTTGTTCT GCAGTCTTCCTTCCACTTTTTGTTAGGAAACAAAACAGAACTCACTTGGG AAATTCATAATGGGGAACGCTTTTCTGAATGATATCgttaaaaagaacaa ttttgaGAATAAGAATTGACTGTTTGCATCTTTCCTTTTCGGACCTTCTA CCTCGAGGTCCTATAAAATTAACTCCTCTTTGTTTGTTCGTTTGATTTGT CATTTTGTATATCAGTATTTTTACACCTTAATGAGTGCCCCATATGTCAC AATAATTAGTCACTTAAGGGTTATGGAGTTTTCTGTTCAATTCTATGTCA AATGTTCAATGTTTTGTAGATGAACCAGATAGGTCTAAAGTATCATTTAT TACTTCTTAGGGTTTCACGACCGCACAACTAACAATGGTGGAAGAAAACG ATAAATTTGTCAAACAACGAGAAGAAGAAATTTCACACATTGTTCAATCT ATAGGCGACTTGAATACCATATTCAAAGATCTATCAATCCTGATTGTGGA TCAGGTAAGGTTCATTCTTTCCCTTGTCAATTAACACGATACCATGGAAC AATTACATGCATCTGTGAAACTGATCTAtacaaaaaaaatgatattCCAG ATTCCTTCATTATCATCGATTCGCTTGGccttactttttattttcaaaaa taatttacttaATGCTAACGTACTAGTCATCAGTTTTGATTACGTGCCAT TTAACTGAGAAAATGAAAGTaggtacagtatgtggcccccaaaacggcga tcaaatttaaaatttctctcaaagctagaggaaaagaggttttacaaaaa ttttcttgcatgcaaaactttaacatctctactttatttcccgacagttc tttttcgaaattttcaatttcaacatttgataggtagcttttttctaatg gcccacaaaacggaggtttgcaattttagcgatttctcgagatatcttta agatatgaatacaaaattttgaccataattttgaaatatgatttagaggg ttttgggcataaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNtacagtatacccctggttgtcaaaatgcaggtttggggcccccaa aacggaggtgtagttaaaatcaaattattaagcccagtggtaataggagg AAAACCtttgaacatatttgtgtttacccttaaatttacgacccgataga tgtaaaatttatgatttttatgaaatatttcaagattttcgatattgcaa agtccaaactgaagaaaatcaatgtcttttgaaaatagttccattcatgt atggaaaaagctgtgaaaatttgagaagaaaagcttaactgaaactgaaa atataagctttaaaggtaattttctcctatattttacagaaaaatgacag aatttgccatttttgctaATTCAGCGGAAATTTTTAtatatgttattttt ttgttataagctatTAACTCAACCTGATAGGAATgtaattccaagatttt ttgctgtttctcatatttagaattttcggttttatcaatgctgattctag ggtcccaaaatactggttgacctttaagatgcTATATCTTTTACCCATCC TCTAAGGTCACAGATCTGcagtatctgcattttctgaacggcattaggtt tagaaagtttcctataccccattttcataacttattttcaatatccaagg agctagagtgagttatatgcaatttttatctaattttggtgttaaaatat ctcCTTCatacgcaaatatgttattttgaatctgtctcaaaccataaaaa acatgctcattttttaatataaccatcattctttcaaaataaacaaaaat cgtttaattctgataaatctacaagtcagaatcctcattttaatgacaac ttcCGTTTTTGGGGCTGTCTCCGTTTTGGGAGCCATATACTGTAGCATAA GTTTTTATGACTGTGAATTCTTTGATATAAGGTATATCATTTTGTAATTT ATGTATATTAGGAAATTATGAGATACCGTAACACAACAAATATTATCGAG GCCCAGAATTTAAATCATTCTTTTCACCTTCGTTTCTCTTTATGTTTAGG GCACGATATTGGATAGAATAGATTATAATGTGGAGCAAGCGTCAGTACAA GTCGAAAAAGGATATCAACAGCTGCAAAAGGTGTGTCAAATACCTTCCAT TACGCCTGTCTGCCtctttcaaagaaatatttatcATTAAGAGAATGTTA AATACGTTTTCACAGGAAGCGAAATCTCTTTTATACATCTGCAATGAATT CACAACCGTTGTCATGTATTCTCCAAAGGGGTCTCCATTGTGGTATTCTT AGTACACGTTTGATAATATATAGGGTTCCAAAGTAATATTAAAATACGGG TAGGGGGTAGAGTAACTTTTTTTGggggtatcttcagatcttcttcgcct ggtgttttttctgttcaatataatgatagaagacatttaaaaaaaaaaat tttaattttatgcatttttgacgaattccagcccaaaaaactgcccgggg gggcttttttaccaaaaaatcagcttttttgaggtttatcttcatatctc ttccaaaacttgctcaaatttaagatgtagtgtttttttatgaaaattta acctattgtgatgcattctgcgcaattttaaggtcagaagtccaaaattg gccgaacccccctgggggtactgattcgcactacaggcaaaaattggaaa aaatggcattttctggccttttcaggcctgtaaatatgtcaaaactattg caaatcttattttttttcacttgctgtactaaattttatgaagaaaccag aaaataatcatattggattgaaaattgtgcccgttggagccctaaaagag ctgttttaagccgattttgggtagcaaaatgctttttaaggccaattttg caagttcataaactttaaactaattgattcACACGTCTGAAATTTTCAGA GATGGAAGTCTTCAGTAAAGTATTTAAGCgaaaagaatttcaaaattttt actttttttaaaatatcataatggcgtcttcaaaaatcgctttttagcaa aaaaaaatcagatttatcaaaatatagcattttttaagggaagcttctac aaactgagtttaaatgctgattgaaattttttttgcagtgatagtactct ggagatactccagggaaatcaaaaacatttgggtctgggatacgtctatg tcccccattatggaatgaaatccctgctaagagccatttttcaggaaaaa ctccaaatttggactgaaaaaatctctaaaatgacaatagacatgggccc gaattttcttgcagtgatagtattctggaaatactgcaggaaaatcaaag tcatctgggcttgggatttgggtatatccaccattttggaattgaaattc ttgctaaaatgcaatatttcaatcaaaaatcttttttttttgatttttcc agtcaaaaattggatttttgattgaaatattgcattttagcaagaatttt gggctggaattcgtcaaaaatgcataaaattaaaatgtttttttttaaat gtcttctatcattatatggaacagaaaaaacaccaggcgaagaagatctg aagataccgaCTTTTACCCCCTACCCCTAATTAAAATTGAGTTTGCGTTG AGCTGATTTTAGAAAagttaaatttgaaattaaattagAATCTATTTTGA ACCATTCATATACNATTGAGTTTGCGTTGAGCTGATTTTAGAAAagttaa atttgaaattaaattagAATCTATTTTGAACCATTCATATACGTATATAC CCGCTACGTGAAGcttaaaatcagttttttggtATACTCCAATCAGGCGA CATTTTCTGCATTTCTTAGCTTTtaattcttattttcttttcGTCTTGTT TTTCAGGCTGAGAAACATCAAAAGAAGAATCGTAAAATGATGTGTATTTT AGTTTTGAGTGTCATTCTAACCATCATGATCATCATTCTTGTGCTCACCA AAAGCTGATAGTGGTTTTATTGTTTTCTAGGAAATATTCATCTATTTATT TGCCCCTTTTTACCACGAATTAGCCCAATTTATGCTTTTGATATGCATTT TAGCTTGGACGAACTAGAATCTCACACGTGACACCTCTGACACCGTTTGA AATTTCAGTGTAGTTGGTCAAAACTACAGAACGAAGAATAATTTGGAAGG GTTGAAAGTGGTTTAATAAAGTTTGACATCAGTCATTAGCTTGGCTTTTC TCATAcatgtttataagaacatttggaCAATTGTCATAGAGATAAGCGCA TCCAGGCTCAGACCAAATTAAGACGTTGTGATAAAGAACTTTTAACAGTT TTTAACGGATTGCGAGAGTATTAACGTAGAAAATATAATAACAATTCCAT TCCAGTCTTGCCAAGCCTAAAACAATTTCCTTTTTCGGGGTTAGTTCTTA TTTTAAAAGATAATTTTGGATGCCATTTTGTATATTTAGTTAGATGTTAT TGTTAAATTGCATCATCTTTCGTttcattttagaaaatttttgaatttaa ttttgctatTTGCAATATCTATTGATaattgattatcttttctcGGACAC TTATTTTAATGCTGAATAAAGCCTAATCTTACTTTCGGTCAACTGAGAAT ACATCAATGAACATTTTTATATGGGCACAGCTGCTATCATTTTtcgttta aaatatatttttgagtaacACTGCGAACAATGAATTATCCATCATCCttg aatttctattttatttattattatattCAGCTATTGtaaatattataatt ttttcggTCCG

Coding sequence (CDS) from alignment at sc0000025:28015..33475+

>TCONS_00003073 ID=TCONS_00003073|Name=TCONS_00003073|organism=Clytia hemisphaerica|type=CDS|length=2895bp|location=Sequence derived from alignment at sc0000025:28015..33475+ (Clytia hemisphaerica)
NGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAAAAAGCAGA
ACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACAACTTCAAG
ATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAAAACgtatg
aagaaCAGAGAGGAAAGGGAAAAGGAATATTTTAGCAACGATTTCAACCC
TACCAATGTGTTCATGCAAGAAGATGAAAACTTCGAAGAACTATACGATA
AGGGTTTCACGACCGCACAACTAACAATGGTGGAAGAAAACGATAAATTT
GTCAAACAACGAGAAGAAGAAATTTCACACATTGTTCAATCTATAGGCGA
CTTGAATACCATATTCAAAGATCTATCAATCCTGATTGTGGATCAGGGCA
CGATATTGGATAGAATAGATTATAATGTGGAGCAAGCGTCAGTACAAGTC
GAAAAAGGATATCAACAGCTGCAAAAGGCTGAGAAACATCAAAAGAAGAA
TCGTAAAATGATGTGTATTTTAGTTTTGAGTGTCATTCTAACCATCATGA
TCATCATTCTTGTGCTCACCAAAAGCTGANGCTGTATACAGTCCATTCAG
GGACGATCCATGGGCTGCCAAAAAGCAGAACGACAAATCATCAAAAACGT
CGTGTCATCTCTAGCTTCACAACTTCAAGATCTATCTTTTAACTTCAAAA
AGGACCAATCTAAATATCTAAAACgtatgaagaaCAGAGAGGAAAGGGAA
AAGGAATATTTTAGCAACGATTTCAACCCTACCAATGTGTTCATGCAAGA
AGATGAAAACTTCGAAGAACTATACGATAAGGGTTTCACGACCGCACAAC
TAACAATGGTGGAAGAAAACGATAAATTTGTCAAACAACGAGAAGAAGAA
ATTTCACACATTGTTCAATCTATAGGCGACTTGAATACCATATTCAAAGA
TCTATCAATCCTGATTGTGGATCAGGGCACGATATTGGATAGAATAGATT
ATAATGTGGAGCAAGCGTCAGTACAAGTCGAAAAAGGATATCAACAGCTG
CAAAAGGCTGAGAAACATCAAAAGAAGAATCGTAAAATGATGTGTATTTT
AGTTTTGAGTGTCATTCTAACCATCATGATCATCATTCTTGTGCTCACCA
AAAGCTGANGCTGTATACAGTCCATTCAGGGACGATCCATGGGCTGCCAA
AAAGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTCTAGCTTCACA
ACTTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCTAAATATCTAA
AACgtatgaagaaCAGAGAGGAAAGGGAAAAGGAATATTTTAGCAACGAT
TTCAACCCTACCAATGTGTTCATGCAAGAAGATGAAAACTTCGAAGAACT
ATACGATAAGGGTTTCACGACCGCACAACTAACAATGGTGGAAGAAAACG
ATAAATTTGTCAAACAACGAGAAGAAGAAATTTCACACATTGTTCAATCT
ATAGGCGACTTGAATACCATATTCAAAGATCTATCAATCCTGATTGTGGA
TCAGGGCACGATATTGGATAGAATAGATTATAATGTGGAGCAAGCGTCAG
TACAAGTCGAAAAAGGATATCAACAGCTGCAAAAGGCTGAGAAACATCAA
AAGAAGAATCGTAAAATGATGTGTATTTTAGTTTTGAGTGTCATTCTAAC
CATCATGATCATCATTCTTGTGCTCACCAAAAGCTGANGCTGTATACAGT
CCATTCAGGGACGATCCATGGGCTGCCAAAAAGCAGAACGACAAATCATC
AAAAACGTCGTGTCATCTCTAGCTTCACAACTTCAAGATCTATCTTTTAA
CTTCAAAAAGGACCAATCTAAATATCTAAAACgtatgaagaaCAGAGAGG
AAAGGGAAAAGGAATATTTTAGCAACGATTTCAACCCTACCAATGTGTTC
ATGCAAGAAGATGAAAACTTCGAAGAACTATACGATAAGGGTTTCACGAC
CGCACAACTAACAATGGTGGAAGAAAACGATAAATTTGTCAAACAACGAG
AAGAAGAAATTTCACACATTGTTCAATCTATAGGCGACTTGAATACCATA
TTCAAAGATCTATCAATCCTGATTGTGGATCAGGGCACGATATTGGATAG
AATAGATTATAATGTGGAGCAAGCGTCAGTACAAGTCGAAAAAGGATATC
AACAGCTGCAAAAGGCTGAGAAACATCAAAAGAAGAATCGTAAAATGATG
TGTATTTTAGTTTTGAGTGTCATTCTAACCATCATGATCATCATTCTTGT
GCTCACCAAAAGCTGANGCTGTATACAGTCCATTCAGGGACGATCCATGG
GCTGCCAAAAAGCAGAACGACAAATCATCAAAAACGTCGTGTCATCTCTA
GCTTCACAACTTCAAGATCTATCTTTTAACTTCAAAAAGGACCAATCTAA
ATATCTAAAACgtatgaagaaCAGAGAGGAAAGGGAAAAGGAATATTTTA
GCAACGATTTCAACCCTACCAATGTGTTCATGCAAGAAGATGAAAACTTC
GAAGAACTATACGATAAGGGTTTCACGACCGCACAACTAACAATGGTGGA
AGAAAACGATAAATTTGTCAAACAACGAGAAGAAGAAATTTCACACATTG
TTCAATCTATAGGCGACTTGAATACCATATTCAAAGATCTATCAATCCTG
ATTGTGGATCAGGGCACGATATTGGATAGAATAGATTATAATGTGGAGCA
AGCGTCAGTACAAGTCGAAAAAGGATATCAACAGCTGCAAAAGGCTGAGA
AACATCAAAAGAAGAATCGTAAAATGATGTGTATTTTAGTTTTGAGTGTC
ATTCTAACCATCATGATCATCATTCTTGTGCTCACCAAAAGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001704XLOC_001704Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003073-proteinTCONS_00003073-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003073-exon-sc0000025-1491911889:28015..28159TCONS_00003073-exon-sc0000025-1491911889:28015..28159Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1510915933:28015..28159TCONS_00003073-exon-sc0000025-1510915933:28015..28159Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1575043694:28015..28159TCONS_00003073-exon-sc0000025-1575043694:28015..28159Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1491911889:28443..28549TCONS_00003073-exon-sc0000025-1491911889:28443..28549Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1510915933:28443..28549TCONS_00003073-exon-sc0000025-1510915933:28443..28549Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1575043694:28443..28549TCONS_00003073-exon-sc0000025-1575043694:28443..28549Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1491911889:28925..29068TCONS_00003073-exon-sc0000025-1491911889:28925..29068Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1510915933:28925..29068TCONS_00003073-exon-sc0000025-1510915933:28925..29068Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1575043694:28925..29068TCONS_00003073-exon-sc0000025-1575043694:28925..29068Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1491911889:30714..30794TCONS_00003073-exon-sc0000025-1491911889:30714..30794Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1510915933:30714..30794TCONS_00003073-exon-sc0000025-1510915933:30714..30794Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1575043694:30714..30794TCONS_00003073-exon-sc0000025-1575043694:30714..30794Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1491911889:32571..33475TCONS_00003073-exon-sc0000025-1491911889:32571..33475Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1510915933:32571..33475TCONS_00003073-exon-sc0000025-1510915933:32571..33475Clytia hemisphaericaexon
TCONS_00003073-exon-sc0000025-1575043694:32571..33475TCONS_00003073-exon-sc0000025-1575043694:32571..33475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:28015..33475 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.011 25.5417 7.87642 5.66212 13.7454 10.894 18.7426 17.037 11.2398 11.6177 8.82505 7.93642 4.96845 4.38687 4.58553 5.32645 7.6743 7.35393 3.47235 6.3251 6.78435 8.00191 18.8305 17.9709 6.42966 6.63674 11.1146 8.58651 17.7921 19.598
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
molecular_function GO:0005484 SNAP receptor activity
Blast
BLAST of TCONS_00003073 vs. Swiss-Prot (Human)
Match: STX16 (Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 9.458e-43
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 1
Query:    4 CIQSIQGRSMGCQKAERQIIKNVVSSLASQLQDLSFNFKKDQSKYLXXXXXXXXXXXXYFSNDFNPTNVFMQEDENFEELYDKGFTTAQLTMVEENDKFVKQREEEISHIVQSIGDLNTIFKDLSILIVDQGTILDRIDYNVEQASVQVEKGYQQLQKAEKHQKKNRKM 510
             +Q++  R+  C + E +++ NVV+SLA  LQ+LS +F+  QS YLKRMKNREER + +F      T+V + +D +   LY +GFT  QL +VE+N   V++RE EI  IVQSI DLN IF+DL  +IV+QGT+LDRIDYNVEQ+ ++ E G +QL KAE++QKKNRKM
Sbjct:  139 AVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFD-----TSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKM 302          
The following BLAST results are available for this feature:
BLAST of TCONS_00003073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX169.458e-4352.07Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3[more]
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