TCONS_00003073-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003073-protein
Unique NameTCONS_00003073-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length192

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003073-protein ID=TCONS_00003073-protein|Name=TCONS_00003073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
XCIQSIQGRSMGCQKAERQIIKNVVSSLASQLQDLSFNFKKDQSKYLKRM
KNREEREKEYFSNDFNPTNVFMQEDENFEELYDKGFTTAQLTMVEENDKF
VKQREEEISHIVQSIGDLNTIFKDLSILIVDQGTILDRIDYNVEQASVQV
EKGYQQLQKAEKHQKKNRKMMCILVLSVILTIMIIILVLTKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001704XLOC_001704Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003073TCONS_00003073Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR006012Syntaxin/epimorphin_CS
IPR010989SNARE
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005484SNAP receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016020 membrane
molecular_function GO:0005484 SNAP receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 93..160
e-value: 4.8E-17
score: 72.6
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 134..186
e-value: 1.7E-20
score: 72.6
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 98..160
score: 19.188
NoneNo IPR availableGENE3D1.20.58.70coord: 1..60
e-value: 1.3E-7
score: 31.0
NoneNo IPR availableGENE3D1.20.5.110coord: 72..192
e-value: 1.0E-26
score: 92.1
NoneNo IPR availableCDDcd15845SNARE_syntaxin16coord: 101..159
e-value: 1.01514E-26
score: 96.759
IPR006012Syntaxin/epimorphin, conserved sitePROSITEPS00914SYNTAXINcoord: 104..143
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 8..153

Blast
[Close]
BLAST of TCONS_00003073-protein vs. Swiss-Prot (Human)
Match: STX16 (Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.014e-55
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 0 
Query:    2 CIQSIQGRSMGCQKAERQIIKNVVSSLASQLQDLSFNFKKDQSKYLKRMKNREEREKEYFSNDFNPTNVFMQEDENFEELYDKGFTTAQLTMVEENDKFVKQREEEISHIVQSIGDLNTIFKDLSILIVDQGTILDRIDYNVEQASVQVEKGYQQLQKAEKHQKKNRKM 170
             +Q++  R+  C + E +++ NVV+SLA  LQ+LS +F+  QS YLKRMKNREER + +F      T+V + +D +   LY +GFT  QL +VE+N   V++RE EI  IVQSI DLN IF+DL  +IV+QGT+LDRIDYNVEQ+ ++ E G +QL KAE++QKKNRKM
Sbjct:  139 AVQALPSRARACSEQEGRLLGNVVASLAQALQELSTSFRHAQSGYLKRMKNREERSQHFFD-----TSVPLMDDGDDNTLYHRGFTEDQLVLVEQNTLMVEEREREIRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQYQKKNRKM 302
The following BLAST results are available for this feature:
BLAST of TCONS_00003073-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX161.014e-5552.07Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3[more]
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