TCONS_00003056 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003056
Unique NameTCONS_00003056
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003056 ID=TCONS_00003056|Name=TCONS_00003056|organism=Clytia hemisphaerica|type=transcript|length=1247bp
CAcgaattttaaagtctttaCTGCGAATAAGTTTCTTAACTCGACCGAGT
CTCCATTGACTACGTTTCAATCGTTCATCTTTAATCAATACTACATCGCC
TTTGTTTGCGTGTAAACTACTGTTCGACTTTTTACGTCTTTGATGTTCTC
GTAGTTCAAGAAGGTATTCGTTTTGCcataaagtccaaaaatgatCAACA
AGTTCTCGAACCCGTGTTAACTGTTCGGAAGGTTCGATATTTTCGGTTTC
TGAATCTGGTAATTGCACTTCATTCACAATGTTTCTACCGTACAACAGTT
TGTTGGGTGTTAGAATTTCATTAACCTCGTCCGAATAAAGGTAAGTTAAG
GGTCGATTGTTCAATATACATTGTATCTCTTTCAATAGAGTAACTACGTC
GTTAAAGTTCAATATCGCTTTACGTAACACTTTTCGTAAGCATCGTTTGA
CCATCTTTACGACTCTTTCAAAAAATCCACCTGTCCACGGTGAACTCtca
atattgaatttccaaataACACCTTTACTTGTCATGAAGTCTTGTACGTC
TGACGAAATGAAGTTCGTACCATTGTCTGAAATAACAGTTTTCGGACATC
CAAAAATGTTCGTGTAACGTTTGAGTATGTTTACGCACGCTGGACCAGAG
CAGTCAGTAGCTAAGTCCAAATAAACTGCTCTGGAGCTGGCACAAGTGAT
GATCGCTATCCATGCTTTGTAAGTCGAGCCATCTGAATCGTAAATGTTTG
TTACATGTACTGGACCGGCGTAATCTATTCCAACGTGTGAAAATGCGTTA
TCGTAAGATACTCGTTCTTTTGGCAGCGGACCTGCCTCTGGGTAATCGTA
ATTCTGTCCTTCATAATATCTACAAGTAGGACATTTACTCAAAATTCGTT
TAATAAAGTTTCTCGGCTGCGTTATCCAATACTCTTGTCTGATGTGATTG
AGGGTTTCTTTTACCCCTCGGTGCATAACGTCTTTGTGTGATTTCAAGAC
GACGAGTTCGGTAAATTTCGTTTTTGACAGTAAAATTGGATACTTTGAAT
CATACGGGAGTTCAGCATTGTCTATTCTCCCTCTACAACGAAACAAGCCA
TTATCATCAACAAATAAATTCAACTGTCTCTGTAAATTTGTAAAGTTCTT
TTTGCTTTGTAAGGAGCTTTGTGCATCCTTCAACCATAACAGCTTGGCTT
CCAACATTTCTTCTCCAGTGATACCACCATTGATGCCATTGATACCA
Run BLAST on NCBI

protein sequence of Integrase domain containing protein

>TCONS_00003056-protein ID=TCONS_00003056-protein|Name=Integrase domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
GINGINGGITGEEMLEAKLLWLKDAQSSLQSKKNFTNLQRQLNLFVDDNG
LFRCRGRIDNAELPYDSKYPILLSKTKFTELVVLKSHKDVMHRGVKETLN
HIRQEYWITQPRNFIKRILSKCPTCRYYEGQNYDYPEAGPLPKERVSYDN
AFSHVGIDYAGPVHVTNIYDSDGSTYKAWIAIITCASSRAVYLDLATDCS
GPACVNILKRYTNIFGCPKTVISDNGTNFISSDVQDFMTSKGVIWKFNIE
SSPWTGGFFERVVKMVKRCLRKVLRKAILNFNDVVTLLKEIQCILNNRPL
TYLYSDEVNEILTPNKLLYGRNIVNEVQLPDSETENIEPSEQLTRVRELV
DHFWTLWQNEYLLELREHQRRKKSNSSLHANKGDVVLIKDERLKRSQWRL
GRVKKLIRSKDFKIR
Run BLAST on NCBI

transcript from alignment at sc0000024:762467..763713

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003056 ID=TCONS_00003056|Name=TCONS_00003056|organism=Clytia hemisphaerica|type=transcript|length=1247bp|location=Sequence derived from alignment at sc0000024:762467..763713 (Clytia hemisphaerica)
TGGTATCAATGGCATCAATGGTGGTATCACTGGAGAAGAAATGTTGGAAG
CCAAGCTGTTATGGTTGAAGGATGCACAAAGCTCCTTACAAAGCAAAAAG
AACTTTACAAATTTACAGAGACAGTTGAATTTATTTGTTGATGATAATGG
CTTGTTTCGTTGTAGAGGGAGAATAGACAATGCTGAACTCCCGTATGATT
CAAAGTATCCAATTTTACTGTCAAAAACGAAATTTACCGAACTCGTCGTC
TTGAAATCACACAAAGACGTTATGCACCGAGGGGTAAAAGAAACCCTCAA
TCACATCAGACAAGAGTATTGGATAACGCAGCCGAGAAACTTTATTAAAC
GAATTTTGAGTAAATGTCCTACTTGTAGATATTATGAAGGACAGAATTAC
GATTACCCAGAGGCAGGTCCGCTGCCAAAAGAACGAGTATCTTACGATAA
CGCATTTTCACACGTTGGAATAGATTACGCCGGTCCAGTACATGTAACAA
ACATTTACGATTCAGATGGCTCGACTTACAAAGCATGGATAGCGATCATC
ACTTGTGCCAGCTCCAGAGCAGTTTATTTGGACTTAGCTACTGACTGCTC
TGGTCCAGCGTGCGTAAACATACTCAAACGTTACACGAACATTTTTGGAT
GTCCGAAAACTGTTATTTCAGACAATGGTACGAACTTCATTTCGTCAGAC
GTACAAGACTTCATGACAAGTAAAGGTGTtatttggaaattcaatattga
GAGTTCACCGTGGACAGGTGGATTTTTTGAAAGAGTCGTAAAGATGGTCA
AACGATGCTTACGAAAAGTGTTACGTAAAGCGATATTGAACTTTAACGAC
GTAGTTACTCTATTGAAAGAGATACAATGTATATTGAACAATCGACCCTT
AACTTACCTTTATTCGGACGAGGTTAATGAAATTCTAACACCCAACAAAC
TGTTGTACGGTAGAAACATTGTGAATGAAGTGCAATTACCAGATTCAGAA
ACCGAAAATATCGAACCTTCCGAACAGTTAACACGGGTTCGAGAACTTGT
TGatcatttttggactttatgGCAAAACGAATACCTTCTTGAACTACGAG
AACATCAAAGACGTAAAAAGTCGAACAGTAGTTTACACGCAAACAAAGGC
GATGTAGTATTGATTAAAGATGAACGATTGAAACGTAGTCAATGGAGACT
CGGTCGAGTTAAGAAACTTATTCGCAGtaaagactttaaaattcgTG

Coding sequence (CDS) from alignment at sc0000024:762467..763713

>TCONS_00003056 ID=TCONS_00003056|Name=TCONS_00003056|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at sc0000024:762467..763713 (Clytia hemisphaerica)
GGTATCAATGGCATCAATGGTGGTATCACTGGAGAAGAAATGTTGGAAGC
CAAGCTGTTATGGTTGAAGGATGCACAAAGCTCCTTACAAAGCAAAAAGA
ACTTTACAAATTTACAGAGACAGTTGAATTTATTTGTTGATGATAATGGC
TTGTTTCGTTGTAGAGGGAGAATAGACAATGCTGAACTCCCGTATGATTC
AAAGTATCCAATTTTACTGTCAAAAACGAAATTTACCGAACTCGTCGTCT
TGAAATCACACAAAGACGTTATGCACCGAGGGGTAAAAGAAACCCTCAAT
CACATCAGACAAGAGTATTGGATAACGCAGCCGAGAAACTTTATTAAACG
AATTTTGAGTAAATGTCCTACTTGTAGATATTATGAAGGACAGAATTACG
ATTACCCAGAGGCAGGTCCGCTGCCAAAAGAACGAGTATCTTACGATAAC
GCATTTTCACACGTTGGAATAGATTACGCCGGTCCAGTACATGTAACAAA
CATTTACGATTCAGATGGCTCGACTTACAAAGCATGGATAGCGATCATCA
CTTGTGCCAGCTCCAGAGCAGTTTATTTGGACTTAGCTACTGACTGCTCT
GGTCCAGCGTGCGTAAACATACTCAAACGTTACACGAACATTTTTGGATG
TCCGAAAACTGTTATTTCAGACAATGGTACGAACTTCATTTCGTCAGACG
TACAAGACTTCATGACAAGTAAAGGTGTtatttggaaattcaatattgaG
AGTTCACCGTGGACAGGTGGATTTTTTGAAAGAGTCGTAAAGATGGTCAA
ACGATGCTTACGAAAAGTGTTACGTAAAGCGATATTGAACTTTAACGACG
TAGTTACTCTATTGAAAGAGATACAATGTATATTGAACAATCGACCCTTA
ACTTACCTTTATTCGGACGAGGTTAATGAAATTCTAACACCCAACAAACT
GTTGTACGGTAGAAACATTGTGAATGAAGTGCAATTACCAGATTCAGAAA
CCGAAAATATCGAACCTTCCGAACAGTTAACACGGGTTCGAGAACTTGTT
GatcatttttggactttatgGCAAAACGAATACCTTCTTGAACTACGAGA
ACATCAAAGACGTAAAAAGTCGAACAGTAGTTTACACGCAAACAAAGGCG
ATGTAGTATTGATTAAAGATGAACGATTGAAACGTAGTCAATGGAGACTC
GGTCGAGTTAAGAAACTTATTCGCAGtaaagactttaaaattcgT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001687XLOC_001687Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Integrase domain containing proteinTCONS_00003056-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003056-exon-sc0000024-1491911889:762467..763713TCONS_00003056-exon-sc0000024-1491911889:762467..763713Clytia hemisphaericaexon
TCONS_00003056-exon-sc0000024-1510915933:762467..763713TCONS_00003056-exon-sc0000024-1510915933:762467..763713Clytia hemisphaericaexon
TCONS_00003056-exon-sc0000024-1575043694:762467..763713TCONS_00003056-exon-sc0000024-1575043694:762467..763713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:762467..763713 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91769	1.70445	1.33279	0.522998	6.53758	4.93463	4.56197	5.50762	3.53304	3.63476	6.84082	3.76034	5.91152	6.40189	17.7528	17.4147	5.35148	6.105	1.92656	2.66858	10.9102	10.9771	5.37067	5.31783	8.88858	6.65995	6.60095	7.57874	0.82836	0.777288
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003056 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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