Integrase domain containing protein (polypeptide) - C. hemisphaerica

Overview
NameIntegrase domain containing protein
Unique NameTCONS_00003056-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003056-protein ID=TCONS_00003056-protein|Name=Integrase domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
GINGINGGITGEEMLEAKLLWLKDAQSSLQSKKNFTNLQRQLNLFVDDNG
LFRCRGRIDNAELPYDSKYPILLSKTKFTELVVLKSHKDVMHRGVKETLN
HIRQEYWITQPRNFIKRILSKCPTCRYYEGQNYDYPEAGPLPKERVSYDN
AFSHVGIDYAGPVHVTNIYDSDGSTYKAWIAIITCASSRAVYLDLATDCS
GPACVNILKRYTNIFGCPKTVISDNGTNFISSDVQDFMTSKGVIWKFNIE
SSPWTGGFFERVVKMVKRCLRKVLRKAILNFNDVVTLLKEIQCILNNRPL
TYLYSDEVNEILTPNKLLYGRNIVNEVQLPDSETENIEPSEQLTRVRELV
DHFWTLWQNEYLLELREHQRRKKSNSSLHANKGDVVLIKDERLKRSQWRL
GRVKKLIRSKDFKIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001687XLOC_001687Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003056TCONS_00003056Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 165..268
e-value: 8.9E-13
score: 48.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 138..322
score: 16.929
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 143..360
e-value: 1.5E-32
score: 112.3
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 149..303

Blast
The following BLAST results are available for this feature:
BLAST of Integrase domain containing protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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