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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=transcript|length=1615bp
cccccgggattacGCATTATTAAGTTCTCAATAATTTGATCTGGAAGGAG
TCTTTCGAGGTTAAGAGTAAGTAAAGACATTTAAAGGGCTGCCATAGTCA
TATTATGGACAATTCATATTTATATATCAAGGGCTTTCAGTGttttttaa
tgtcttttttGTCTAGAAGCTTGAAATCTGAAGCCATAACGAAAGGGCTT
CGGAAAACACGGATCCAAGGCCTACATGTACTTATGAAAACCTTTATTTA
TCTACTTTTagaagaaaaagatgaaaaaatcaaCTATAAATAATGTACTA
TCCGCTTTTCGCCGGAAAGTCCGTAAAAAACGTAACGGAAAGACGAAGAA
TCTCTCGGTTTTCGTTCTCGGTGCAGCGAACACCGGAAAATCTTCGATCA
TTAACGTTTTATGTGACGATGAATTCTCGGATGCGTATTCAccgacaaaa
tttgacatttacGAGAAAGAACTTATCGGTTCCGGGAATAACAACCCGAC
TGTTAAATTTGTCTTCTTTGATATCTCTGGTAAAGACAGTTGCCCAATAA
TGAGACGAGAATATATAAGCAAAGCAGATATCTTCTTATTGGTATATAGC
GCTGATCAACCTTCCAGTTATAAACAACTCTTAAGATACAAAACGGAAAT
TGAACAAGTTAAAGAGGACCGAATTTCGGAACTCTCAGTGGCAATTATAC
GTAACAAAACTGATTTAGAGACAAAGAAAGTTGATGAAAAGAAGCTAGCC
TGGTGTCGTTCTGTATATCATTGTTCTGCAAAATATGGTCATAATATTTC
ACATTTGACGGAATTCCTGACAACCGAGAGTCTGTGCGCCGGAAATATTA
TCGAACAAAAGTTAAACAAAGGTTTGAGTGGACGTTATATATACGGTGAC
AACGACCAGAGTAAAagtattcgattgattcgacccAAAAGTTATTATAA
ACATCATGAAGGCGAAGAAAGGTCGGAGCTTTATGAAGATTTTGCACTTG
CTGAAGGGCTAGGGACCCCTTCTTTGCCTAAGAGATGATTGGAATAAATT
CATTAGATTGGTCCGGCCCAAACATCATGAAGGCTGAGAAGGCGTGGAGC
TTAGATGATTTTGCGCCACCTGAGGAGGGACTCTTCGTTTTCTCGATAGa
ttaatttataagaactttggTTTTTAATGGCTGGAATAGATGGGCTGCGA
TGGCGATTAAATAATATAGAAGACTGTTTACCAAGAGCCTTCCACAAATC
AGTTTCTTGATGCTTGAATCAACATTATAACTTCTTactattttgctatt
ttttatcTGCGTGAAGTaatgtattttttaatgaatGTATAAAACTAATG
GTTTGACAACTCAAAATTAcatatatttcattttcagtgccTTTTAACTC
TTTTGATATTTGTTGAGTGTAGTGAACTCAGTAGCTTTTTTAGACCAAAA
AGTGAAACACATCATAGAGGGGGCAAAGTCTTTGACATCTTTTACGCGAT
CCAACCAGACTaaaatcatggtcgaaatatactgagattttagtgtattt
ttgCGTTTATGATTGTAGGTCTATTTCAAAAAGTGGAGcatttaacccta
ttagccccagggggg Run BLAST on NCBI protein sequence of TCONS_00003050-protein >TCONS_00003050-protein ID=TCONS_00003050-protein|Name=TCONS_00003050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MKKSTINNVLSAFRRKVRKKRNGKTKNLSVFVLGAANTGKSSIINVLCDD
EFSDAYSPTKFDIYEKELIGSGNNNPTVKFVFFDISGKDSCPIMRREYIS
KADIFLLVYSADQPSSYKQLLRYKTEIEQVKEDRISELSVAIIRNKTDLE
TKKVDEKKLAWCRSVYHCSAKYGHNISHLTEFLTTESLCAGNIIEQKLNK
GLSGRYIYGDNDQSKSIRLIRPKSYYKHHEGEERSELYEDFALAEGLGTP
SLPKR Run BLAST on NCBI transcript from alignment at sc0000024:641998..643612 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=transcript|length=1615bp|location=Sequence derived from alignment at sc0000024:641998..643612 (Clytia hemisphaerica)
cccccctggggctaatagggttaaatgCTCCACTTTTTGAAATAGACCTA
CAATCATAAACGcaaaaatacactaaaatctcagtatatttcgaccatga
ttttAGTCTGGTTGGATCGCGTAAAAGATGTCAAAGACTTTGCCCCCTCT
ATGATGTGTTTCACTTTTTGGTCTAAAAAAGCTACTGAGTTCACTACACT
CAACAAATATCAAAAGAGTTAAAAggcactgaaaatgaaatatatgTAAT
TTTGAGTTGTCAAACCATTAGTTTTATACattcattaaaaaatacattAC
TTCACGCAgataaaaaatagcaaaatagtAAGAAGTTATAATGTTGATTC
AAGCATCAAGAAACTGATTTGTGGAAGGCTCTTGGTAAACAGTCTTCTAT
ATTATTTAATCGCCATCGCAGCCCATCTATTCCAGCCATTAAAAAccaaa
gttcttataaattaatCTATCGAGAAAACGAAGAGTCCCTCCTCAGGTGG
CGCAAAATCATCTAAGCTCCACGCCTTCTCAGCCTTCATGATGTTTGGGC
CGGACCAATCTAATGAATTTATTCCAATCATCTCTTAGGCAAAGAAGGGG
TCCCTAGCCCTTCAGCAAGTGCAAAATCTTCATAAAGCTCCGACCTTTCT
TCGCCTTCATGATGTTTATAATAACTTTTgggtcgaatcaatcgaatact
TTTACTCTGGTCGTTGTCACCGTATATATAACGTCCACTCAAACCTTTGT
TTAACTTTTGTTCGATAATATTTCCGGCGCACAGACTCTCGGTTGTCAGG
AATTCCGTCAAATGTGAAATATTATGACCATATTTTGCAGAACAATGATA
TACAGAACGACACCAGGCTAGCTTCTTTTCATCAACTTTCTTTGTCTCTA
AATCAGTTTTGTTACGTATAATTGCCACTGAGAGTTCCGAAATTCGGTCC
TCTTTAACTTGTTCAATTTCCGTTTTGTATCTTAAGAGTTGTTTATAACT
GGAAGGTTGATCAGCGCTATATACCAATAAGAAGATATCTGCTTTGCTTA
TATATTCTCGTCTCATTATTGGGCAACTGTCTTTACCAGAGATATCAAAG
AAGACAAATTTAACAGTCGGGTTGTTATTCCCGGAACCGATAAGTTCTTT
CTCgtaaatgtcaaattttgtcggTGAATACGCATCCGAGAATTCATCGT
CACATAAAACGTTAATGATCGAAGATTTTCCGGTGTTCGCTGCACCGAGA
ACGAAAACCGAGAGATTCTTCGTCTTTCCGTTACGTTTTTTACGGACTTT
CCGGCGAAAAGCGGATAGTACATTATTTATAGttgattttttcatctttt
tcttctAAAAGTAGATAAATAAAGGTTTTCATAAGTACATGTAGGCCTTG
GATCCGTGTTTTCCGAAGCCCTTTCGTTATGGCTTCAGATTTCAAGCTTC
TAGACaaaaaagacattaaaaaaCACTGAAAGCCCTTGATATATAAATAT
GAATTGTCCATAATATGACTATGGCAGCCCTTTAAATGTCTTTACTTACT
CTTAACCTCGAAAGACTCCTTCCAGATCAAATTATTGAGAACTTAATAAT
GCgtaatcccggggg Coding sequence (CDS) from alignment at sc0000024:641998..643612 >TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000024:641998..643612 (Clytia hemisphaerica)
TCATCTCTTAGGCAAAGAAGGGGTCCCTAGCCCTTCAGCAAGTGCAAAAT
CTTCATAAAGCTCCGACCTTTCTTCGCCTTCATGATGTTTATAATAACTT
TTgggtcgaatcaatcgaatactTTTACTCTGGTCGTTGTCACCGTATAT
ATAACGTCCACTCAAACCTTTGTTTAACTTTTGTTCGATAATATTTCCGG
CGCACAGACTCTCGGTTGTCAGGAATTCCGTCAAATGTGAAATATTATGA
CCATATTTTGCAGAACAATGATATACAGAACGACACCAGGCTAGCTTCTT
TTCATCAACTTTCTTTGTCTCTAAATCAGTTTTGTTACGTATAATTGCCA
CTGAGAGTTCCGAAATTCGGTCCTCTTTAACTTGTTCAATTTCCGTTTTG
TATCTTAAGAGTTGTTTATAACTGGAAGGTTGATCAGCGCTATATACCAA
TAAGAAGATATCTGCTTTGCTTATATATTCTCGTCTCATTATTGGGCAAC
TGTCTTTACCAGAGATATCAAAGAAGACAAATTTAACAGTCGGGTTGTTA
TTCCCGGAACCGATAAGTTCTTTCTCgtaaatgtcaaattttgtcggTGA
ATACGCATCCGAGAATTCATCGTCACATAAAACGTTAATGATCGAAGATT
TTCCGGTGTTCGCTGCACCGAGAACGAAAACCGAGAGATTCTTCGTCTTT
CCGTTACGTTTTTTACGGACTTTCCGGCGAAAAGCGGATAGTACATTATT
TATAGttgattttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003050-exon-sc0000024-1491911889:641998..643612 | TCONS_00003050-exon-sc0000024-1491911889:641998..643612 | Clytia hemisphaerica | exon |
| TCONS_00003050-exon-sc0000024-1510915933:641998..643612 | TCONS_00003050-exon-sc0000024-1510915933:641998..643612 | Clytia hemisphaerica | exon |
| TCONS_00003050-exon-sc0000024-1575043694:641998..643612 | TCONS_00003050-exon-sc0000024-1575043694:641998..643612 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:641998..643612 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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