TCONS_00003050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003050
Unique NameTCONS_00003050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1615

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=transcript|length=1615bp
cccccgggattacGCATTATTAAGTTCTCAATAATTTGATCTGGAAGGAG
TCTTTCGAGGTTAAGAGTAAGTAAAGACATTTAAAGGGCTGCCATAGTCA
TATTATGGACAATTCATATTTATATATCAAGGGCTTTCAGTGttttttaa
tgtcttttttGTCTAGAAGCTTGAAATCTGAAGCCATAACGAAAGGGCTT
CGGAAAACACGGATCCAAGGCCTACATGTACTTATGAAAACCTTTATTTA
TCTACTTTTagaagaaaaagatgaaaaaatcaaCTATAAATAATGTACTA
TCCGCTTTTCGCCGGAAAGTCCGTAAAAAACGTAACGGAAAGACGAAGAA
TCTCTCGGTTTTCGTTCTCGGTGCAGCGAACACCGGAAAATCTTCGATCA
TTAACGTTTTATGTGACGATGAATTCTCGGATGCGTATTCAccgacaaaa
tttgacatttacGAGAAAGAACTTATCGGTTCCGGGAATAACAACCCGAC
TGTTAAATTTGTCTTCTTTGATATCTCTGGTAAAGACAGTTGCCCAATAA
TGAGACGAGAATATATAAGCAAAGCAGATATCTTCTTATTGGTATATAGC
GCTGATCAACCTTCCAGTTATAAACAACTCTTAAGATACAAAACGGAAAT
TGAACAAGTTAAAGAGGACCGAATTTCGGAACTCTCAGTGGCAATTATAC
GTAACAAAACTGATTTAGAGACAAAGAAAGTTGATGAAAAGAAGCTAGCC
TGGTGTCGTTCTGTATATCATTGTTCTGCAAAATATGGTCATAATATTTC
ACATTTGACGGAATTCCTGACAACCGAGAGTCTGTGCGCCGGAAATATTA
TCGAACAAAAGTTAAACAAAGGTTTGAGTGGACGTTATATATACGGTGAC
AACGACCAGAGTAAAagtattcgattgattcgacccAAAAGTTATTATAA
ACATCATGAAGGCGAAGAAAGGTCGGAGCTTTATGAAGATTTTGCACTTG
CTGAAGGGCTAGGGACCCCTTCTTTGCCTAAGAGATGATTGGAATAAATT
CATTAGATTGGTCCGGCCCAAACATCATGAAGGCTGAGAAGGCGTGGAGC
TTAGATGATTTTGCGCCACCTGAGGAGGGACTCTTCGTTTTCTCGATAGa
ttaatttataagaactttggTTTTTAATGGCTGGAATAGATGGGCTGCGA
TGGCGATTAAATAATATAGAAGACTGTTTACCAAGAGCCTTCCACAAATC
AGTTTCTTGATGCTTGAATCAACATTATAACTTCTTactattttgctatt
ttttatcTGCGTGAAGTaatgtattttttaatgaatGTATAAAACTAATG
GTTTGACAACTCAAAATTAcatatatttcattttcagtgccTTTTAACTC
TTTTGATATTTGTTGAGTGTAGTGAACTCAGTAGCTTTTTTAGACCAAAA
AGTGAAACACATCATAGAGGGGGCAAAGTCTTTGACATCTTTTACGCGAT
CCAACCAGACTaaaatcatggtcgaaatatactgagattttagtgtattt
ttgCGTTTATGATTGTAGGTCTATTTCAAAAAGTGGAGcatttaacccta
ttagccccagggggg
Run BLAST on NCBI

protein sequence of TCONS_00003050-protein

>TCONS_00003050-protein ID=TCONS_00003050-protein|Name=TCONS_00003050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MKKSTINNVLSAFRRKVRKKRNGKTKNLSVFVLGAANTGKSSIINVLCDD
EFSDAYSPTKFDIYEKELIGSGNNNPTVKFVFFDISGKDSCPIMRREYIS
KADIFLLVYSADQPSSYKQLLRYKTEIEQVKEDRISELSVAIIRNKTDLE
TKKVDEKKLAWCRSVYHCSAKYGHNISHLTEFLTTESLCAGNIIEQKLNK
GLSGRYIYGDNDQSKSIRLIRPKSYYKHHEGEERSELYEDFALAEGLGTP
SLPKR
Run BLAST on NCBI

transcript from alignment at sc0000024:641998..643612

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=transcript|length=1615bp|location=Sequence derived from alignment at sc0000024:641998..643612 (Clytia hemisphaerica)
cccccctggggctaatagggttaaatgCTCCACTTTTTGAAATAGACCTA CAATCATAAACGcaaaaatacactaaaatctcagtatatttcgaccatga ttttAGTCTGGTTGGATCGCGTAAAAGATGTCAAAGACTTTGCCCCCTCT ATGATGTGTTTCACTTTTTGGTCTAAAAAAGCTACTGAGTTCACTACACT CAACAAATATCAAAAGAGTTAAAAggcactgaaaatgaaatatatgTAAT TTTGAGTTGTCAAACCATTAGTTTTATACattcattaaaaaatacattAC TTCACGCAgataaaaaatagcaaaatagtAAGAAGTTATAATGTTGATTC AAGCATCAAGAAACTGATTTGTGGAAGGCTCTTGGTAAACAGTCTTCTAT ATTATTTAATCGCCATCGCAGCCCATCTATTCCAGCCATTAAAAAccaaa gttcttataaattaatCTATCGAGAAAACGAAGAGTCCCTCCTCAGGTGG CGCAAAATCATCTAAGCTCCACGCCTTCTCAGCCTTCATGATGTTTGGGC CGGACCAATCTAATGAATTTATTCCAATCATCTCTTAGGCAAAGAAGGGG TCCCTAGCCCTTCAGCAAGTGCAAAATCTTCATAAAGCTCCGACCTTTCT TCGCCTTCATGATGTTTATAATAACTTTTgggtcgaatcaatcgaatact TTTACTCTGGTCGTTGTCACCGTATATATAACGTCCACTCAAACCTTTGT TTAACTTTTGTTCGATAATATTTCCGGCGCACAGACTCTCGGTTGTCAGG AATTCCGTCAAATGTGAAATATTATGACCATATTTTGCAGAACAATGATA TACAGAACGACACCAGGCTAGCTTCTTTTCATCAACTTTCTTTGTCTCTA AATCAGTTTTGTTACGTATAATTGCCACTGAGAGTTCCGAAATTCGGTCC TCTTTAACTTGTTCAATTTCCGTTTTGTATCTTAAGAGTTGTTTATAACT GGAAGGTTGATCAGCGCTATATACCAATAAGAAGATATCTGCTTTGCTTA TATATTCTCGTCTCATTATTGGGCAACTGTCTTTACCAGAGATATCAAAG AAGACAAATTTAACAGTCGGGTTGTTATTCCCGGAACCGATAAGTTCTTT CTCgtaaatgtcaaattttgtcggTGAATACGCATCCGAGAATTCATCGT CACATAAAACGTTAATGATCGAAGATTTTCCGGTGTTCGCTGCACCGAGA ACGAAAACCGAGAGATTCTTCGTCTTTCCGTTACGTTTTTTACGGACTTT CCGGCGAAAAGCGGATAGTACATTATTTATAGttgattttttcatctttt tcttctAAAAGTAGATAAATAAAGGTTTTCATAAGTACATGTAGGCCTTG GATCCGTGTTTTCCGAAGCCCTTTCGTTATGGCTTCAGATTTCAAGCTTC TAGACaaaaaagacattaaaaaaCACTGAAAGCCCTTGATATATAAATAT GAATTGTCCATAATATGACTATGGCAGCCCTTTAAATGTCTTTACTTACT CTTAACCTCGAAAGACTCCTTCCAGATCAAATTATTGAGAACTTAATAAT GCgtaatcccggggg

Coding sequence (CDS) from alignment at sc0000024:641998..643612

>TCONS_00003050 ID=TCONS_00003050|Name=TCONS_00003050|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000024:641998..643612 (Clytia hemisphaerica)
TCATCTCTTAGGCAAAGAAGGGGTCCCTAGCCCTTCAGCAAGTGCAAAAT
CTTCATAAAGCTCCGACCTTTCTTCGCCTTCATGATGTTTATAATAACTT
TTgggtcgaatcaatcgaatactTTTACTCTGGTCGTTGTCACCGTATAT
ATAACGTCCACTCAAACCTTTGTTTAACTTTTGTTCGATAATATTTCCGG
CGCACAGACTCTCGGTTGTCAGGAATTCCGTCAAATGTGAAATATTATGA
CCATATTTTGCAGAACAATGATATACAGAACGACACCAGGCTAGCTTCTT
TTCATCAACTTTCTTTGTCTCTAAATCAGTTTTGTTACGTATAATTGCCA
CTGAGAGTTCCGAAATTCGGTCCTCTTTAACTTGTTCAATTTCCGTTTTG
TATCTTAAGAGTTGTTTATAACTGGAAGGTTGATCAGCGCTATATACCAA
TAAGAAGATATCTGCTTTGCTTATATATTCTCGTCTCATTATTGGGCAAC
TGTCTTTACCAGAGATATCAAAGAAGACAAATTTAACAGTCGGGTTGTTA
TTCCCGGAACCGATAAGTTCTTTCTCgtaaatgtcaaattttgtcggTGA
ATACGCATCCGAGAATTCATCGTCACATAAAACGTTAATGATCGAAGATT
TTCCGGTGTTCGCTGCACCGAGAACGAAAACCGAGAGATTCTTCGTCTTT
CCGTTACGTTTTTTACGGACTTTCCGGCGAAAAGCGGATAGTACATTATT
TATAGttgattttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001681XLOC_001681Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003050-proteinTCONS_00003050-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003050-exon-sc0000024-1491911889:641998..643612TCONS_00003050-exon-sc0000024-1491911889:641998..643612Clytia hemisphaericaexon
TCONS_00003050-exon-sc0000024-1510915933:641998..643612TCONS_00003050-exon-sc0000024-1510915933:641998..643612Clytia hemisphaericaexon
TCONS_00003050-exon-sc0000024-1575043694:641998..643612TCONS_00003050-exon-sc0000024-1575043694:641998..643612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:641998..643612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46352 1.1811 0.714255 0.363369 10.5828 7.63664 6.90996 9.3239 17.4148 66.6093 16.4891 75.5558 0.587361 0.487984 0.214923 0.353656 2.29203 1.43674 1.12658 0.954336 0.927078 1.21379 1.85163 1.99904 1.13785 1.66833 2.69877 1.66165 0.616149 0.856034
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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