TCONS_00003048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003048
Unique NameTCONS_00003048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003048 ID=TCONS_00003048|Name=TCONS_00003048|organism=Clytia hemisphaerica|type=transcript|length=581bp
ATTTCATCTGCTACATAAATGAACCTGTGTACTTTACTGTTTTACTTTGT
TTGTTATCTCACACTCCTTAACCATAGGTCAACAACAAAGTGGCGGTTTT
CGGACcattatttaaaacttttttagcatttttggcATTAGGTATTTCGA
CCAACTTCAAATGTTCCTAATCTTTAGCCTTTTTCTTTGACCCAAAGTTA
GACTTCCTTAGGATGGCTCTATTCTCATCTCACATCTCATATCCAAAACT
GCCGTAAAGGTCGTTGCCTATCTTTAGAATTACATCTAAATCATTTTGGG
TCCAATAATGTATTGCTTTTACACGCGAATAGACTATCGCCGATAGGGAC
ATGAACATACACTGGGAACCCGCTGTACGACCGAAAACTGCTGCATTACC
TTGGTGAGTGGATGCTTTAACTACTTTGTGAATCGTAACAGGGCCTGGAT
TAGTTCCTATATCACcatagttcggaagggggtcactaccccccctaccc
tagagctaccccccctaccctaggttcttcccccttttaaaatttgatgc
tacccccctcaaaattttaaaatcctaccAT
Run BLAST on NCBI

transcript from alignment at sc0000024:502200..502780

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003048 ID=TCONS_00003048|Name=TCONS_00003048|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at sc0000024:502200..502780 (Clytia hemisphaerica)
ATggtaggattttaaaattttgaggggggtagcatcaaattttaaaaggg
ggaagaacctagggtagggggggtagctctagggtagggggggtagtgac
ccccttccgaactatgGTGATATAGGAACTAATCCAGGCCCTGTTACGAT
TCACAAAGTAGTTAAAGCATCCACTCACCAAGGTAATGCAGCAGTTTTCG
GTCGTACAGCGGGTTCCCAGTGTATGTTCATGTCCCTATCGGCGATAGTC
TATTCGCGTGTAAAAGCAATACATTATTGGACCCAAAATGATTTAGATGT
AATTCTAAAGATAGGCAACGACCTTTACGGCAGTTTTGGATATGAGATGT
GAGATGAGAATAGAGCCATCCTAAGGAAGTCTAACTTTGGGTCAAAGAAA
AAGGCTAAAGATTAGGAACATTTGAAGTTGGTCGAAATACCTAATgccaa
aaatgctaaaaaagttttaaataatgGTCCGAAAACCGCCACTTTGTTGT
TGACCTATGGTTAAGGAGTGTGAGATAACAAACAAAGTAAAACAGTAAAG
TACACAGGTTCATTTATGTAGCAGATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001679XLOC_001679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003048-exon-sc0000024-1491911889:502200..502780TCONS_00003048-exon-sc0000024-1491911889:502200..502780Clytia hemisphaericaexon
TCONS_00003048-exon-sc0000024-1510915933:502200..502780TCONS_00003048-exon-sc0000024-1510915933:502200..502780Clytia hemisphaericaexon
TCONS_00003048-exon-sc0000024-1575043694:502200..502780TCONS_00003048-exon-sc0000024-1575043694:502200..502780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:502200..502780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.567518	0.717816	1.48042	1.27799	0.900285	0.519806	0.980908	0.803525	1.23792	0.852666	1.64259	2.62835	0.922745	1.25519	0.31122	0	0.0715941	0.992343	0.405523	0.212175	0.496865	0.879629	0.125256	0.298244	1.20629	1.01055	0.42544	0.139563	0	0.12899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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