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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003027 ID=TCONS_00003027|Name=TCONS_00003027|organism=Clytia hemisphaerica|type=transcript|length=1161bp
TACCCGACTATGCTATATTATTGACTTTGTCTTGAACAAAAATGTATGAA
GAGATCGTGTTATTCGTAGGCGGTGCTGCAATGGTTGGAGCAGCTATTTA
CTTTATTCCCGCAGGCGGTGTAATTTGCTTACAAAATATTGTAATGACAG
AAGGTGTATCGATTATGTATGACTCTGCGAAAGGGCTGATAACAGGGAAA
CCAAAAACAAAGGAAGAATATCTAAGTGACTTGGTGTGGACAGGTCTTAC
GGCAGCTGCTACTGGTGGACTTGGTACATTCATGCCCAAAATTTTGAAAC
GATGGGGTGTTTCTAGAAAAATTATCCCTGCCATAGGCACTGGGACAAAA
GCGATTGCTTTAAAGTCATTACAAGAATTGAAATCTTATGGTGgtaaaaa
agttgatattgacACAATACAAGTCGATATTGACACATTACAAGAAACAT
TTTACAAAGAAATGGGAGGCTCTTTTTACGCCATTTCCTTAAATATACAA
CGTCGTTGTGAAAATCAAGGAAGTTTTGATAATTCTGCTGCTATTATGGA
GCTCGTCATTGGTTTATGGTTAGAAAAAGTTAAATCAAAGTTTGCTGAAA
TTAAATACAAACCGAGTGTTGATCAAAACGATGTAGAAAAAACCTCCTGA
AGACAGGAAAACACGAAGGATACAATTTATGTACGTTCAAATGGTCATTC
TTCATGTAAATTTTATTctaaacaatatttcgacctccTTAGTAGAGGTC
TTCATCAGGTTTACAAACGTTCAGTTGAGAtcattagcgagattatgtcG
GATGACATCAATGCAATGACCTCAACCTGATATGCGAGAGCATTGGTTTC
CAGAACCTAGACGAAGGATACAAATAAGTTAGATGCAATTTTTCGTGAAT
TTAGACTAAAGTTCAGACCAtattcagacgttacggttccgctCCAAAAC
GGTTctgaaacaagtgtgaacgtcaaaattcgaaacgtcaaaaaagaaga
cgttacaaagcaaaacagatcaaaacggtttcgctccacttttttcatcg
gaacagaACTGCTaggttttcttgctccgaaacgttccgaaaccaatatg
aacacactcgatccgtaacgaaaatcataccggagcgaaacggaacggta
acgtgtgaaca Run BLAST on NCBI protein sequence of TCONS_00003027-protein >TCONS_00003027-protein ID=TCONS_00003027-protein|Name=TCONS_00003027-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MYEEIVLFVGGAAMVGAAIYFIPAGGVICLQNIVMTEGVSIMYDSAKGLI
TGKPKTKEEYLSDLVWTGLTAAATGGLGTFMPKILKRWGVSRKIIPAIGT
GTKAIALKSLQELKSYGGKKVDIDTIQVDIDTLQETFYKEMGGSFYAISL
NIQRRCENQGSFDNSAAIMELVIGLWLEKVKSKFAEIKYKPSVDQNDVEK
TS Run BLAST on NCBI transcript from alignment at sc0000024:8751..9911 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003027 ID=TCONS_00003027|Name=TCONS_00003027|organism=Clytia hemisphaerica|type=transcript|length=1161bp|location=Sequence derived from alignment at sc0000024:8751..9911 (Clytia hemisphaerica)
tgttcacacgttaccgttccgtttcgctccggtatgattttcgttacgga
tcgagtgtgttcatattggtttcggaacgtttcggagcaagaaaacctAG
CAGTtctgttccgatgaaaaaagtggagcgaaaccgttttgatctgtttt
gctttgtaacgtcttcttttttgacgtttcgaattttgacgttcacactt
gtttcagAACCGTTTTGGagcggaaccgtaacgtctgaataTGGTCTGAA
CTTTAGTCTAAATTCACGAAAAATTGCATCTAACTTATTTGTATCCTTCG
TCTAGGTTCTGGAAACCAATGCTCTCGCATATCAGGTTGAGGTCATTGCA
TTGATGTCATCCgacataatctcgctaatgaTCTCAACTGAACGTTTGTA
AACCTGATGAAGACCTCTACTAAggaggtcgaaatattgtttagAATAAA
ATTTACATGAAGAATGACCATTTGAACGTACATAAATTGTATCCTTCGTG
TTTTCCTGTCTTCAGGAGGTTTTTTCTACATCGTTTTGATCAACACTCGG
TTTGTATTTAATTTCAGCAAACTTTGATTTAACTTTTTCTAACCATAAAC
CAATGACGAGCTCCATAATAGCAGCAGAATTATCAAAACTTCCTTGATTT
TCACAACGACGTTGTATATTTAAGGAAATGGCGTAAAAAGAGCCTCCCAT
TTCTTTGTAAAATGTTTCTTGTAATGTGTCAATATCGACTTGTATTGTgt
caatatcaacttttttacCACCATAAGATTTCAATTCTTGTAATGACTTT
AAAGCAATCGCTTTTGTCCCAGTGCCTATGGCAGGGATAATTTTTCTAGA
AACACCCCATCGTTTCAAAATTTTGGGCATGAATGTACCAAGTCCACCAG
TAGCAGCTGCCGTAAGACCTGTCCACACCAAGTCACTTAGATATTCTTCC
TTTGTTTTTGGTTTCCCTGTTATCAGCCCTTTCGCAGAGTCATACATAAT
CGATACACCTTCTGTCATTACAATATTTTGTAAGCAAATTACACCGCCTG
CGGGAATAAAGTAAATAGCTGCTCCAACCATTGCAGCACCGCCTACGAAT
AACACGATCTCTTCATACATTTTTGTTCAAGACAAAGTCAATAATATAGC
ATAGTCGGGTA Coding sequence (CDS) from alignment at sc0000024:8751..9911 >TCONS_00003027 ID=TCONS_00003027|Name=TCONS_00003027|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000024:8751..9911 (Clytia hemisphaerica)
TCAGGAGGTTTTTTCTACATCGTTTTGATCAACACTCGGTTTGTATTTAA
TTTCAGCAAACTTTGATTTAACTTTTTCTAACCATAAACCAATGACGAGC
TCCATAATAGCAGCAGAATTATCAAAACTTCCTTGATTTTCACAACGACG
TTGTATATTTAAGGAAATGGCGTAAAAAGAGCCTCCCATTTCTTTGTAAA
ATGTTTCTTGTAATGTGTCAATATCGACTTGTATTGTgtcaatatcaact
tttttacCACCATAAGATTTCAATTCTTGTAATGACTTTAAAGCAATCGC
TTTTGTCCCAGTGCCTATGGCAGGGATAATTTTTCTAGAAACACCCCATC
GTTTCAAAATTTTGGGCATGAATGTACCAAGTCCACCAGTAGCAGCTGCC
GTAAGACCTGTCCACACCAAGTCACTTAGATATTCTTCCTTTGTTTTTGG
TTTCCCTGTTATCAGCCCTTTCGCAGAGTCATACATAATCGATACACCTT
CTGTCATTACAATATTTTGTAAGCAAATTACACCGCCTGCGGGAATAAAG
TAAATAGCTGCTCCAACCATTGCAGCACCGCCTACGAATAACACGATCTC
TTCATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003027-exon-sc0000024-1491911889:8751..9911 | TCONS_00003027-exon-sc0000024-1491911889:8751..9911 | Clytia hemisphaerica | exon |
| TCONS_00003027-exon-sc0000024-1510915933:8751..9911 | TCONS_00003027-exon-sc0000024-1510915933:8751..9911 | Clytia hemisphaerica | exon |
| TCONS_00003027-exon-sc0000024-1575043694:8751..9911 | TCONS_00003027-exon-sc0000024-1575043694:8751..9911 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:8751..9911 . |
Blast
The following BLAST results are available for this feature:
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