TCONS_00003025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003025
Unique NameTCONS_00003025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003025 ID=TCONS_00003025|Name=TCONS_00003025|organism=Clytia hemisphaerica|type=transcript|length=134bp
agaagatgaAAAGATTGGGCAGCTTCACAGACTGGTTGTAAAAATTTCAG
AATTAACAAAAATGCCTGTAGCTGTACTTGCACTGTCAGGAGGGAATATA
GTGGTCTCAGGTTCTACAAATACCCTCTACACAG
Run BLAST on NCBI

transcript from alignment at sc0000024:900396..901024-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003025 ID=TCONS_00003025|Name=TCONS_00003025|organism=Clytia hemisphaerica|type=transcript|length=629bp|location=Sequence derived from alignment at sc0000024:900396..901024- (Clytia hemisphaerica)
AGAAGATGAAAAGATTGGGCAGCTTCACAGACTGGTAAGATATATGGTAT
GGTTTTTGATGTAAGGAAAATACTGCATATGCTTGTAAAGTAAGCTAGCC
ACTTGTTATATTATTACTATACCAAATTAAAATTCTTGTCTTCTCTGTGT
CAACCTACATTAGATTGAATATTTTCTTTGGTTTGTTATGAGCCAGGTCA
AGATTTTTAGATGAACATGAAGATGGAATATAAATTGCATTTTTAAATCA
ATAAAATTATCAAAATATCATTTTTAACCTATCCTTGAAAATTTTTTAGA
TCTTTCTCCTTTGGTTTAGTTTTAATCCAGAGCAAAGCATGTAATATTCT
AGTTAATGATATCGAAGTTCTGGTGTGTTGAAAAGTTTATCTCTTTTATT
TAGGTTGTAAAAATTTCAGAATTAACAAAAATGCCTGTAGCTGTACTTGC
ACTGTCAGGAGGGAATATAGTGGTCTCAGGTATTACATCTGCATTTTTTC
TCCTTATATAAAACTTGAAGAATATTAGAGTTTTAACGAACGATTTCTTT
CAGAAATACAACTGTAAGCTTTTCTTTAGAAGGCATCTTGTCTCTTTTGC
TTCAGGTTCTACAAATACCCTCTACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001656XLOC_001656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003025-exon-sc0000024-1575043694:900991..901024TCONS_00003025-exon-sc0000024-1575043694:900991..901024Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1575043694:900546..900621TCONS_00003025-exon-sc0000024-1575043694:900546..900621Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1575043694:900396..900419TCONS_00003025-exon-sc0000024-1575043694:900396..900419Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1510915933:900991..901024TCONS_00003025-exon-sc0000024-1510915933:900991..901024Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1510915933:900546..900621TCONS_00003025-exon-sc0000024-1510915933:900546..900621Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1510915933:900396..900419TCONS_00003025-exon-sc0000024-1510915933:900396..900419Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1491911889:900991..901024TCONS_00003025-exon-sc0000024-1491911889:900991..901024Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1491911889:900546..900621TCONS_00003025-exon-sc0000024-1491911889:900546..900621Clytia hemisphaericaexon
TCONS_00003025-exon-sc0000024-1491911889:900396..900419TCONS_00003025-exon-sc0000024-1491911889:900396..900419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:900396..901024 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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