TCONS_00003023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003023
Unique NameTCONS_00003023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003023 ID=TCONS_00003023|Name=TCONS_00003023|organism=Clytia hemisphaerica|type=transcript|length=1418bp
ATCAATTCCAAATTCAACATTGTACATTTCGGAAATCTTATCAAAACTTG
TAGCACCAATACAAATCTGTAGAGAAATCCTCTCTAGATATCGTGTCGTA
AAAGCTATGGATGACGTGATCATAAAGTAGTCATCTCCATCTGTTAGATA
CGTTCGATATCCATCTTTATTTTCTGTCCAGTGTCTGTAAAACTTCGTCT
TACACGTCTTACACAAACCATGGTAATTCAATCCATCAATAATGCCATTT
TCAGTGTAAATCCTTACTTGGGATGCTCTAGGGTTAATCCTGATCTTCTT
CGAGCAACAAGTAGTGGTAATTGGGATAAATGCTGGCTGCTCCATGTATT
CGCTGTTCCCTGTTTTATACCTAACCATACAGGTGCTGCAGTGTAGGATA
TGACTTTCGATTGGACGAAAATAAACTTCACCATTTGGTAGGTCAAGGTC
TACTAATACCTGTAGATTACTGTCACTTAATGTGGTTACATACGATTGCA
AAGTCTTCGTTATGTATTCGATTCGGTGTGGAGTGCGTAATGAAACATTA
CTAAGTAAATTCTGTAACACTTTCAATACATCAATCCGAATAATCATCTT
CGCGCCTCCCTCGCGCCTCTTAACTTTTCTCCGTATCTGCTTCCAAAAGG
TTTGTACTcaaacaaatttttcttttgtacataatttgtttcataaaaaa
ctgacgttacaataaatttttcaagaagACAATGCAATGGCTTTTTTTAG
TTGTGACGTCGGATTTTGATTTTGGGAGAACATTGCATTGCCATctttaa
aaagaagaaacttaACGGCCATAAATTCATTTCACCTCAATCAACACTCG
AGGAACAATCATGTCGAAacctttgaaagaaatctcaGACGATGTTTACC
GGCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGGACACACAGAAAACC
TTCCCTACACTAATCGATGAATGGATAACAGTGGAGATGAAAAAACTTGG
AGTTCCGTATTCTTACCTTGCATACCCACTTCTAACGAGTATATCATACT
GTCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGTACCAAGAACCCGTC
ATCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACAAATAAATCAAGCTG
TGTATCACTTTTCCGAAATATCATCAACAAGATTGAAACAAATGAGCGAG
ATGATAAACAGCACATCTTTGACAGTGGCACTATCGAGGGTCTCATGACC
ACACTTCATGAGAACAACGGCTCCGTTTTATGCGCTGTAGACGAGTTTTC
CACATTCTTAGATGCAATGGATAAAAACTCAAATGGAAATGTCGAACGCT
CAAGATATCTATCTCTTTGGTCCGGTTCATCATGGTCAAAAAAGACAAAG
CACGGTGGAAAGGTGGAA
Run BLAST on NCBI

transcript from alignment at sc0000024:849354..851000-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003023 ID=TCONS_00003023|Name=TCONS_00003023|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at sc0000024:849354..851000- (Clytia hemisphaerica)
ATCAATTCCAAATTCAACATTGTACATTTCGGAAATCTTATCAAAACTTG
TAGCACCAATACAAATCTGTAGAGAAATCCTCTCTAGATATCGTGTCGTA
AAAGCTATGGATGACGTGATCATAAAGTAGTCATCTCCATCTGTTAGATA
CGTTCGATATCCATCTTTATTTTCTGTCCAGTGTCTGTAAAACTTCGTCT
TACACGTCTTACACAAACCATGGTAATTCAATCCATCAATAATGCCATTT
TCAGTGTAAATCCTTACTTGGGATGCTCTAGGGTTAATCCTGATCTTCTT
CGAGCAACAAGTAGTGGTAATTGGGATAAATGCTGGCTGCTCCATGTATT
CGCTGTTCCCTGTTTTATACCTAACCATACAGGTGCTGCAGTGTAGGATA
TGACTTTCGATTGGACGAAAATAAACTTCACCATTTGGTAGGTCAAGGTC
TACTAATACCTGTAGATTACTGTCACTTAATGTGGTTACATACGATTGCA
AAGTCTTCGTTATGTATTCGATTCGGTGTGGAGTGCGTAATGAAACATTA
CTAAGTAAATTCTGTAACACTTTCAATACATCAATCCGAATAATCATCTT
CGCGCCTCCCTCGCGCCTCTTAACTTTTCTCCGTATCTGCTTCCAAAAGG
TTTGTACTCAAACAAATTTTTCTTTTGTACATAATTTGTTTCATAAAAAA
CTGACGTTACAATAAATTTTTCAAGAAGACAATGCAATGGCTTTTTTTAG
TTGTGACGTCGGATTTTGATTTTGGGAGAACATTGCATTGCCATCTTTAA
AAAGAAGAAACTTAACGGCCATAAATTCATTTCACCTCAATCAACACTCG
AGGAACAATCATGTCGAAACCTTTGAAAGAAATCTCAGACGATGTTTACC
GGCGCGCACTGGAAAAATGTTGGGCGGTAAAGTTGGACACACAGAAAACC
TTCCCTACACTAATCGATGAATGGATAACAGTGGAGATGAAAAAACTTGG
AGTTCCGTATTCTTACCTTGCATACCCACTTCTAACGAGTATATCATACT
GTCTCGGTGTGAGCAGAGTAAAACTGGCTGAATCGTACCAAGAACCCGTC
ATCCTTTACTCGTTGGTATCAGGCAGAAGTGGTACAAATAAATCAAGCTG
TGTATCACTTTTCCGAAATATCATCAACAAGATTGAAACAAATGAGCGAG
ATGATAAACAGCACATCTTTGACAGTGGCACTATCGAGGGTCTCATGACC
ACACTTCATGAGAACAACGGCTCCGTTTTATGCGCTGTAGACGAGTTTTC
CACATTCTTAGATGCAATGGATAAAAACTCAAATGGAAATGTCGAACGCT
CAAGGTAACTTTTTACTTAGTTTTGTAATTTTAAGATCCCATATACCTCA
CCGTCAAATATAGGTAATACGCACTCCAATGGAGAACCTAAAATCTTAAT
TGTGTTCGCACGGGTTTTCGCATAATCTCAGTTAGTATTAGACCTGACAT
CCGTATGTTCAATTTTAACGTTTATCTTTTGAAAATAGCTCTTCATGTAA
TGGTATATGAACATAAGATACTTTTATCTTTAGATATCTATCTCTTTGGT
CCGGTTCATCATGGTCAAAAAAGACAAAGCACGGTGGAAAGGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001655XLOC_001655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003023-exon-sc0000024-1575043694:849647..851000TCONS_00003023-exon-sc0000024-1575043694:849647..851000Clytia hemisphaericaexon
TCONS_00003023-exon-sc0000024-1575043694:849354..849417TCONS_00003023-exon-sc0000024-1575043694:849354..849417Clytia hemisphaericaexon
TCONS_00003023-exon-sc0000024-1510915933:849647..851000TCONS_00003023-exon-sc0000024-1510915933:849647..851000Clytia hemisphaericaexon
TCONS_00003023-exon-sc0000024-1510915933:849354..849417TCONS_00003023-exon-sc0000024-1510915933:849354..849417Clytia hemisphaericaexon
TCONS_00003023-exon-sc0000024-1491911889:849647..851000TCONS_00003023-exon-sc0000024-1491911889:849647..851000Clytia hemisphaericaexon
TCONS_00003023-exon-sc0000024-1491911889:849354..849417TCONS_00003023-exon-sc0000024-1491911889:849354..849417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:849354..851000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105302	0.171694	0.119228	0.0845841	0.0596668	0.0373036	0.172447	0.0706396	0.056515	0	0.11892	0.097717	0.078065	0.0968368	0.0666516	0.0972926	0.22029	0.197349	0	0.0652847	0.0851164	0.0415168	0	0.142612	9.40813	6.11566	0	0	0.116877	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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