TCONS_00003021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003021
Unique NameTCONS_00003021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003021 ID=TCONS_00003021|Name=TCONS_00003021|organism=Clytia hemisphaerica|type=transcript|length=325bp
ACTCGTTAGCAACGGTCATGACACATACGCTATCATGAGTTTCTATGGCG
ACTACGTGCCAGCATATATAGGATATACATCAAAACAATGCAACTTGGAT
ACGTTTTTTGGGAGAGGAGACAAAAACTATTTGGAAAATACAAATACGGG
AAAAGAAGGagaattcattttcaaagtCAATGATAAAGCATGTATTAAaa
aagTGATGTTACCGTACGGTGGAACGGAAGGGGATTACGTCATAACGGAA
GCAGATGATCTTAATTTTCATATCCGTTTACGTAAATCAATGCCATTGTT
TACAAAAATGGGACGCAACCTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00003021-protein

>TCONS_00003021-protein ID=TCONS_00003021-protein|Name=TCONS_00003021-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
LVSNGHDTYAIMSFYGDYVPAYIGYTSKQCNLDTFFGRGDKNYLENTNTG
KEGEFIFKVNDKACIKKVMLPYGGTEGDYVITEADDLNFHIRLRKSMPLF
TKMGRNLY
Run BLAST on NCBI

transcript from alignment at sc0000024:832639..835051-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003021 ID=TCONS_00003021|Name=TCONS_00003021|organism=Clytia hemisphaerica|type=transcript|length=2413bp|location=Sequence derived from alignment at sc0000024:832639..835051- (Clytia hemisphaerica)
ACTCGTTAGCAACGGTCATGACACATACGCTATCATGAGTTTCTATGGCG ACTACGTGCCAGCATATATAGGATATACATCAAAACAATGCAACTTGGAT ACGTTTTTTGGGAGAGGAGACAAAAACTATTTGGAAAATACAAATACGGG AAAAGAAGGAGAATTCATTTTCAAAGTCAATGATAAAGCATGTATTAAAA AAGGTAGAGCATCCGGCTCACAGATTTATAAAGCCCAAAGGGCTAGATGT CGTGCTTTAAGCCATCACAGGCAGAAAAAGTGAATAGCCGCAAGAAATAT ACTTGCTATTATTTTCAAAAATCCACGAAGCTTGATTGGTCAAGCAATGA AATTCTATTGTAATATCACGTGACCTNGCTGCTACTGTTTTCAAAAATCC GCGAACCTTTTGATTGGTCATGCACTGCAATTCTGTTTTAATATCACTTG ACCTAGGTAGGATTTCCTACCTAGATACGACACACTTTTCAGCCAAAACA CGACATTTAGTCCTTCTGGCTACGTTATCTGATATTTCAATGGCGGATTT GCGGCCGTCCACGCTTAGACGAAGCTATCGTCCGTTAGAAGGGTCAGTAA ACGTGGGAAAATTTATATGCGCATAGCCAGGGCGCAAATCCATCCCGCCT CTAAAACTATTCCCTTTTTAGCCATCTTGTGTAGCCGATAGGATCGTCTA GTCCACGCTATAACGTTCTAAAGGAGCGGATCAATTCCGAGCCAATCAGG TGAGATAGTAGGCCTTTGATGTGCCGCATTCCTAGTCGGGTTCAATTACC CTTCTGCGTATACCTGAATATATTTCAGTTTTACCATGAACATATAAACG ACTGGACATCTATCTTTTATTGTCTCTTTGAAGCGAGCTTCGTTGCCGCC TGTATTTCAAAATTGGTATAAAAAATCCGACAATATTCCGTCATAATTTT ATTTCTTTGAATTATTTAGGTAAAAGGATTGATCGAGCTTGAACATTACT CCTAATGTGCAAAAAAATTATTTTCGAATTTCTTCACAAGTTCGCAATAT ATTTTATCAACATTTTCAACTCTAAAATGCAGAATTTCAACTGCGTGTAT ACTTTTGAATCCTTTTTGTCACTCAAATAATTTNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNTCATTTTATGCTTTTAACGAGGCGGCAACGAAGCTAGCAGCCTT TTCTACAAAAAGACAAAGGAGATGGATGTCCAGTCGTTTATATGTTCATG GTTTTACCCATTAATTCTCGAAAACGAAGACTGGGGTCCAGCCCTTCTGC TGCAAAATCATTTAGGCAGTATGGCGAAATTCCGTAATCTAAACTTTCCC AACCTTCCTAGCCTTTTTTTGGAACACCCGGTATAAAATAGTAAGATTAA AAAAATATATATATGCTCTGCCACCCAAATCTCCTGAAAGAAGATAGTTG GACAGAAATTCTTTGAATTTCTTCACATATATATACAAAGGAATGAGGGA AAGTAGTCTGAATCGCACACCTCTATAGATATAATTCCTATATAGAAGAA ACTTTTTTTCGCTAGAGGATGAGCAGAAGCCTAGAGGAAAAGCGAGCGTA TTTGACAATGGATTTCCCGAACATTCAACCTTTCTTCATTTACAAGCCAG ACCTTTTACAGATATTTTTAGACTTTTCTCTCATCTTTTAGTGATGTTAC CGTACGGTGGAACGGAAGGGGATTACGTCATAACGGAAGCAGATGATCTT AATTTTCATATCCGTTTACGTAAATCAATGCCATTGTTTACAAAAATGGG ACGCAACCTTTAC

Coding sequence (CDS) from alignment at sc0000024:832639..835051-

>TCONS_00003021 ID=TCONS_00003021|Name=TCONS_00003021|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000024:832639..835051- (Clytia hemisphaerica)
TGATGTTACCGTACGGTGGAACGGAAGGGGATTACGTCATAACGGAAGCA
GATGATCTTAATTTTCATATCCGTTTACGTAAATCAATGCCATTGTTTAC
AAAAATGGGACGCAACCTTTACCTCGTTAGCAACGGTCATGACACATACG
CTATCATGAGTTTCTATGGCGACTACGTGCCAGCATATATAGGATATACA
TCAAAACAATGCAACTTGGATACGTTTTTTGGGAGAGGAGACAAAAACTA
TTTGGAAAATACAAATACGGGAAAAGAAGGAGAATTCATTTTCAAAGTCA
ATGATAAAGCATGTATTAAAAAAGTGATGTTACCGTACGGTGGAACGGAA
GGGGATTACGTCATAACGGAAGCAGATGATCTTAATTTTCATATCCGTTT
ACGTAAATCAATGCCATTGTTTACAAAAATGGGACGCAACCTTTACCTCG
TTAGCAACGGTCATGACACATACGCTATCATGAGTTTCTATGGCGACTAC
GTGCCAGCATATATAGGATATACATCAAAACAATGCAACTTGGATACGTT
TTTTGGGAGAGGAGACAAAAACTATTTGGAAAATACAAATACGGGAAAAG
AAGGAGAATTCATTTTCAAAGTCAATGATAAAGCATGTATTAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001653XLOC_001653Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003021-proteinTCONS_00003021-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003021-exon-sc0000024-1575043694:834849..835051TCONS_00003021-exon-sc0000024-1575043694:834849..835051Clytia hemisphaericaexon
TCONS_00003021-exon-sc0000024-1575043694:832639..832760TCONS_00003021-exon-sc0000024-1575043694:832639..832760Clytia hemisphaericaexon
TCONS_00003021-exon-sc0000024-1510915933:834849..835051TCONS_00003021-exon-sc0000024-1510915933:834849..835051Clytia hemisphaericaexon
TCONS_00003021-exon-sc0000024-1510915933:832639..832760TCONS_00003021-exon-sc0000024-1510915933:832639..832760Clytia hemisphaericaexon
TCONS_00003021-exon-sc0000024-1491911889:834849..835051TCONS_00003021-exon-sc0000024-1491911889:834849..835051Clytia hemisphaericaexon
TCONS_00003021-exon-sc0000024-1491911889:832639..832760TCONS_00003021-exon-sc0000024-1491911889:832639..832760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:832639..835051 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.298226 0 0 0.41242 0.3259 0.786369 1.84047 0.257712 0.319217 0 0.814707 0.203394 0 0 0 0 1.8825 0 0 0.295688 0.865356 0.350651 1.27517 0.985048 0.879131 0 0 0.678881 0.345836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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