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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003003 ID=TCONS_00003003|Name=TCONS_00003003|organism=Clytia hemisphaerica|type=transcript|length=759bp
cAGGGTTTTTCATTATAGATTCAAGATGGTTGAAGCAAAGAAAGTTGGAG
TTTTGATTGCATGTTTTGCAGTTTTCATATTATTATCGGCTTCTACCGGT
GGTATTGGGTGGATGACGACTGGAACaagTGAAAAAGGTGCAAATTATGG
GTTGTTTAGCGGTTGTAGCACCAACATTTGTTTTTCATATGGGTCAAATA
TACCTGGTCCCGAAAATAAATGGCGTGCTACTCAAGGCTTCATGGTACTT
TCAGTTTTGGTCAGTCTTGGAGCTACCATCTGTGGTATTATATTGATGAT
CAGTGATAAAGTCCAACCTAAAATCATTGCTATACTTTTGGTGATCGCAT
TTGTTCTTGCAACGATTAGTTTGGCAATCTTTACCGATATCAAGGAagaa
tattataaaaaaatggaTTACGGATGGGCGTATGGATTTGGTTGGGTTGG
CGCCCTTGCTGGTTTGGGCGTTggtgttgttgtttttcttaccAAACGTT
CataataaaatgattttgaatgaAGGTGGAAGGTGAACCAACAACAAGGA
ACTTAATATAAATATAGTGAAGTCTCCGTAACTTGAACACGCACGGGGGA
AAAAAACATGTTCGAGTCGAGTAAAATCCGAGTTATCTAAGGTTCAAGGC
ATCATTGTCAActaacattcgagttatagaggttcgaattaaagagactc
cactttATTAATTAAAATATTATATTAAAATTCATTGCGCACAACAAAAC
ACCACATCA Run BLAST on NCBI protein sequence of TCONS_00003003-protein >TCONS_00003003-protein ID=TCONS_00003003-protein|Name=TCONS_00003003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
RVFHYRFKMVEAKKVGVLIACFAVFILLSASTGGIGWMTTGTSEKGANYG
LFSGCSTNICFSYGSNIPGPENKWRATQGFMVLSVLVSLGATICGIILMI
SDKVQPKIIAILLVIAFVLATISLAIFTDIKEEYYKKMDYGWAYGFGWVG
ALAGLGVGVVVFLTKRS Run BLAST on NCBI transcript from alignment at sc0000024:360804..361919- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003003 ID=TCONS_00003003|Name=TCONS_00003003|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at sc0000024:360804..361919- (Clytia hemisphaerica)
CAGGGTTTTTCATTATAGATTCAAGATGGTTGAAGCAAAGAAAGTTGGAG
TTTTGATTGCATGTTTTGCAGTTTTCATATTATTATCGGCTTCTACCGGT
GGTATTGGGTGGATGACGACTGGAACAAGTATTTTGTTTTTGATTGTTAT
TTAGATAATTCATTGTTGATACATAGACAATAAATATCTTTAAAAGCTAA
TAAAAATGTCAACCTATTTAATACAAAAAATAATACATCTTCAATAAATC
CGACATCATCAATGTAGACTTTAAAACTTCTACATGGGCATGGACGTTGG
TTTCCAATGCTTGATTTTTTCTTTAGATTTTTGAAGTCATTGAGTTGTCC
AAATTCTTTGGGGGAAAAGTTCTCATAATTTGGACAACTCAATGACTTCA
AAAATCACTTCCAGCCCCGGTTTTTGTCTACAGGCTAACAATTTATTATT
ATTTGAGCAACCATTTATTTTTTTCTAAATTTAAGGTGAAAAAGGTGCAA
ATTATGGGTTGTTTAGCGGTTGTAGCACCAACATTTGTTTTTCATATGGG
TCAAATATACCTGGTCCCGAAAATAAATGGCGTGCTACTCAAGGCTTCAT
GGTACTTTCAGTTTTGGTCAGTCTTGGAGCTACCATCTGTGGTATTATAT
TGATGATCAGTGATAAAGTCCAACCTAAAATCATTGCTATACTTTTGGTG
ATCGCATTTGTTCTTGCAACGATTAGTTTGGCAATCTTTACCGATATCAA
GGAAGAATATTATAAAAAAATGGATTACGGATGGGCGTATGGATTTGGTT
GGGTTGGCGCCCTTGCTGGTTTGGGCGTTGGTGTTGTTGTTTTTCTTACC
AAACGTTCATAATAAAATGATTTTGAATGAAGGTGGAAGGTGAACCAACA
ACAAGGAACTTAATATAAATATAGTGAAGTCTCCGTAACTTGAACACGCA
CGGGGGAAAAAAACATGTTCGAGTCGAGTAAAATCCGAGTTATCTAAGGT
TCAAGGCATCATTGTCAACTAACATTCGAGTTATAGAGGTTCGAATTAAA
GAGACTCCACTTTATTAATTAAAATATTATATTAAAATTCATTGCGCACA
ACAAAACACCACATCA Coding sequence (CDS) from alignment at sc0000024:360804..361919- >TCONS_00003003 ID=TCONS_00003003|Name=TCONS_00003003|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000024:360804..361919- (Clytia hemisphaerica)
GTGAAAAAGGTGCAAATTATGGGTTGTTTAGCGGTTGTAGCACCAACATT
TGTTTTTCATATGGGTCAAATATACCTGGTCCCGAAAATAAATGGCGTGC
TACTCAAGGCTTCATGGTACTTTCAGTTTTGGTCAGTCTTGGAGCTACCA
TCTGTGGTATTATATTGATGATCAGTGATAAAGTCCAACCTAAAATCATT
GCTATACTTTTGGTGATCGCATTTGTTCTTGCAACGATTAGTTTGGCAAT
CTTTACCGATATCAAGGAAGAATATTATAAAAAAATGGATTACGGATGGG
CGTATGGATTTGGTTGGGTTGGCGCCCTTGCTGGTTTGGGCGTTGGTGTT
GTTGTTTTTCTTACCAAACGTTCATAAAGGGTTTTTCATTATAGATTCAA
GATGGTTGAAGCAAAGAAAGTTGGAGTTTTGATTGCATGTTTTGCAGTTT
TCATATTATTATCGGCTTCTACCGGTGGTATTGGGTGGATGACGACTGGA
ACAAGTGAAAAAGGTGCAAATTATGGGTTGTTTAGCGGTTGTAGCACCAA
CATTTGTTTTTCATATGGGTCAAATATACCTGGTCCCGAAAATAAATGGC
GTGCTACTCAAGGCTTCATGGTACTTTCAGTTTTGGTCAGTCTTGGAGCT
ACCATCTGTGGTATTATATTGATGATCAGTGATAAAGTCCAACCTAAAAT
CATTGCTATACTTTTGGTGATCGCATTTGTTCTTGCAACGATTAGTTTGG
CAATCTTTACCGATATCAAGGAAGAATATTATAAAAAAATGGATTACGGA
TGGGCGTATGGATTTGGTTGGGTTGGCGCCCTTGCTGGTTTGGGCGTTGG
TGTTGTTGTTTTTCTTACCAAACGTTCATAAAGGGTTTTTCATTATAGAT
TCAAGATGGTTGAAGCAAAGAAAGTTGGAGTTTTGATTGCATGTTTTGCA
GTTTTCATATTATTATCGGCTTCTACCGGTGGTATTGGGTGGATGACGAC
TGGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003003-exon-sc0000024-1575043694:361792..361919 | TCONS_00003003-exon-sc0000024-1575043694:361792..361919 | Clytia hemisphaerica | exon |
| TCONS_00003003-exon-sc0000024-1575043694:360804..361434 | TCONS_00003003-exon-sc0000024-1575043694:360804..361434 | Clytia hemisphaerica | exon |
| TCONS_00003003-exon-sc0000024-1510915933:361792..361919 | TCONS_00003003-exon-sc0000024-1510915933:361792..361919 | Clytia hemisphaerica | exon |
| TCONS_00003003-exon-sc0000024-1510915933:360804..361434 | TCONS_00003003-exon-sc0000024-1510915933:360804..361434 | Clytia hemisphaerica | exon |
| TCONS_00003003-exon-sc0000024-1491911889:361792..361919 | TCONS_00003003-exon-sc0000024-1491911889:361792..361919 | Clytia hemisphaerica | exon |
| TCONS_00003003-exon-sc0000024-1491911889:360804..361434 | TCONS_00003003-exon-sc0000024-1491911889:360804..361434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:360804..361919 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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