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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003002 ID=TCONS_00003002|Name=TCONS_00003002|organism=Clytia hemisphaerica|type=transcript|length=2535bpRun BLAST on NCBI protein sequence of TCONS_00003002-protein >TCONS_00003002-protein ID=TCONS_00003002-protein|Name=TCONS_00003002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp MVDEEKIALRDLDKKDVDNEELDEREQWGHKLDFILSCVGYAVGFGNVWRRun BLAST on NCBI transcript from alignment at sc0000024:306496..341767- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003002 ID=TCONS_00003002|Name=TCONS_00003002|organism=Clytia hemisphaerica|type=transcript|length=35272bp|location=Sequence derived from alignment at sc0000024:306496..341767- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:306496..341767- >TCONS_00003002 ID=TCONS_00003002|Name=TCONS_00003002|organism=Clytia hemisphaerica|type=CDS|length=26838bp|location=Sequence derived from alignment at sc0000024:306496..341767- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003002 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2) HSP 1 Score: 528.865 bits (1361), Expect = 1.859e-177 Identity = 273/630 (43.33%), Postives = 396/630 (62.86%), Query Frame = 3
Query: 144 DEEKIALRDLDKKDVDNEELDEREQWGHKLDFILSCVGYAVGFGNVWRFPNLCFENGGGAFLIPYFLFLALCGMPLFFMELSISQYIGLGPIACWKAVSPIFQGVGYSMLIISFLVSIYYNTIIAWVLYYLFESFRSDVPWRDCQNGWNSEQCYEGPPSNQLIEPTNSTINGTTILSCPKYFVKMFNGSAVVNATQSSLFDMCQFQRPEIRILPAEEFLENYVFEQTKGVDQPGEVKWELALCLLLAWIIVYFCIWKGVKSVGKVVYFTATFPYVVLLILLIRGATLSGSMKGITFYLKPDFNKLADPGVWVRAAGQIFYSLGVGFGSLIAMGSYNKFNNNCYKDAVMVSCINCGTSVLCGFVVFSLLGHMADILQLPIEDVAKSGPGLAFIVYPAGIAQMPVSTLWAILFFLMLITLGLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFN-TQXXXXXXXXXXXXXXXXIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTXXXXXXXXXXXFRETLRIAFSPNEERIQEIEQARMEKANTA 2030
D+ K + + KK D L +R+ W + DF++SCVGYA+G GNVWRFP LC +NGGGAFLIPYFL L G+PLF +E S+ QY +G + WK ++P+F+GVG + ++SF ++IYY II+W +YYL+ SF + +PW+ C N WN+++C+ + ++ TN T SAVV EF E + + T G+D+PG+++W LA+ L +AWI+VYFCIWKGV GKVVYF+AT+PY++L+IL RG TL G+ +GI FY+ P+F KL+D VW+ AA QIF+S G+G GSLIA+GSYN F+NN Y+D+++V CIN TS+ GFV+FS++G MA + + I DVA SGPGLAF+ YP + Q+P+S LWAILFF ML+ LG+DSQF +E +++L DEYPR LR +EL +C I++L+G+ + Q G Y+ ++F+ A G+SLLFL FFE ++I W YG +R DN++ M+G +P WW LCW +F PII+ F++ + G YV+P W +GVGWL+A SSMV IP MA+ + ++ +++ P+E+ ++ +A ++
Sbjct: 25 DKPKTLVVKVQKKAAD---LPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWK-LAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS---NYSMVNTTNMT-------------------SAVV------------------------EFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGS-----------LKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592 The following BLAST results are available for this feature:
BLAST of TCONS_00003002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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