TCONS_00003000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003000
Unique NameTCONS_00003000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003000 ID=TCONS_00003000|Name=TCONS_00003000|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GGGTTTAGACAGTCAGTTTGCGTTCATTGAGGTGGTATTATCCTCACTCA
CTGATGAATATCCGAGGTATTTGCGAAGATATAAAGAACTTGCTACACTG
GTCATGTGTGCTATCGCGTTCCTTCTTGGTATACCTACAGTGTTACAGGC
TGGAGCATACATTGTGGAGATTTTCAACACACAGGCTGGAGGTTTATCTC
TTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATTGGTTGGATTTACGGA
GCTGATCGTTTACTAGACAATGTGGAAACCATGATCGGTTATAAACCAAG
CCGTTGGTGGTTGTTatgttggaaatattttgcacCAATCATCATCTTAG
TGACCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAA
GAATATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTT
CAGTTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAG
CACATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGA
GAGactTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCCAAGAAAT
CGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGCAACGAAA
AGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACTATTCCTC
CCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATCTTTCAAG
GacgcagaaaaaaagtttggtaCATGCTATGTCTTGCACTGTCTCTGAAT
TTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATATAACCAT
AAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATAGGAACAC
TATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGACGTTTAGT
TCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAATTAGATTT
AGAACAATAGAccttattggagtttttttttcttaaaaagtgatgtacag
ggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaaagt
tttatgtgcgtgttcacaaaattgtattttaagctctcc
Run BLAST on NCBI

transcript from alignment at sc0000024:306496..319191-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003000 ID=TCONS_00003000|Name=TCONS_00003000|organism=Clytia hemisphaerica|type=transcript|length=12696bp|location=Sequence derived from alignment at sc0000024:306496..319191- (Clytia hemisphaerica)
GGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTCTGACTCTTGGGAAAG
ATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCTG
GGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTCTGACTCTTGGGAAAGA
TCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCTGG
GTTTAGACAGTCAGGTGAGAGTTGAGTAATCTTTTTGATTATTGGGAAAG
ATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCTG
GGTTTAGACAGTCAGGTAAGAGTTGAGTAATCTTTTTTATTCTTGGGCAA
GATCATCATGGGTTTTGATTTACCTTTTACTAAGCTAACTTGATCACCCT
GGGTTTAGACAGTCAGGTGAGAGTTGAAGACTTTTTGACTCTTGGGCAAG
ATCATCATGTACAGAAGGGTTTTGATTTCCCTTTTACTAATCTGAATTTA
TTTACCTCACAGCCCAATCATAGTTTCCACGCTATCGGTCAAAAGAAAAA
TGAAGCAATTCCATTGGTGCGATCTGACGTAACGGTTGAAAAAAATTGAA
ATGTAGTCAACCTTTTTTTTCGAGCGCACGCTACATTTTTATGACGTAAT
CTTTTTTTCCAAGCAAAAAGGGTTGAAGCGAGAAGGTGTGATCGCAGCGT
GCGCAAGTGTAGATCGGCCTTAAGAATTGAAGTCGTTTCTCATATGTTAA
AAGTCTTACATTAGGTTTTGTTTAACCTTAGTTTGCGTTCATTGAGGTGG
TATTATCCTCACTCACTGATGAATATCCGAGGTATTTGCGAAGATATAAA
GAACTTGCTACACTGGTCATGTGTGCTATCGCGTTCCTTCTTGGTATACC
TACAGTGTTACAGGTATTTACTTAACTTTTTTACAACTTTTCTATCTGTT
CTCAAATACAACTAACCTAAAATCTGACAATGTGTCTGTCTGGCATCTAT
GTCTTTATAATCGTTTATCATCTAATTTAAGAAATAGTTGAACTCGCGCA
ACGCACTTGGCTTAACTACAGTAGCTTCAAATTATTCATAGACCCGATTG
TAGGCCTCGAAGATCAATACTTTTGAAAAGTGAAAAATAAAACAACCCAT
GATATTCACCAAATTCGACCATTTCCAGACCATAGATTTATAAAACCCGA
AGGGCTAAATTTCGTGCGTTAAGCCATCGCAGGCAAAAAAAAAGTGAATT
TCGGGAAAAATATTGTTGCTACTGTTTTTAAAAACCCGGAAGCTTCTGAA
TAGTCAAGTGCTGAAATTCTATTGTAATGTCACGTGCTAACCACGGCACA
CTTTTCAGGAAAAAGTACGTCATATGATATTCGTGATGTAATATTTTATT
TGATTGACACTTTTTAATTCGATCTTCACGGGACAATTTTCTCCGCAATA
AAGCAAAATTCGAATGAGTTTTTTAAACGGTTTGCCAGTTCAAGGGACCA
AGGATATAGCTTGAATTTAATAAAAATTCGAATTATAGAAAGTTGAATTA
CCGAGAGTTGATTGTATATCTAGAAAAGTCGTTTTCCGCAGTGGAGGTAA
CCTGAAAGGCTCCTTTTTCAATAGTTATTTACCATCACATTTAGCTTTAT
TTTCTGAAAAATATCAGAAATTTAAGTGATATGTGTTTACTTTGAGTTTA
TGAAATTATCTTTGAAATGTATTTTAATTATTCAACTGTGCTATTTAATG
AAATCTAGTTCAAAATCGAACTTTTAATAAACTTAAAAAAAAGCTCTAGC
ATCTAGGTCGAGATCTCTATTGTCGGCGAATGCTGACATTGGCAAAAAAA
TCGAAAATGCTCTTGTCGGTACGCAAAGTGTTAATTTGCCTGGAAGGGTT
CAAATAATGACATCAGTCTTTTTTATTTATTATCCAAATATGCTAATGAG
CTGAATACGAAATAAAAAAACATTCGATTTTGGAGAAAACCTTAACCATA
GTCATACTAGGCTTCTAGAAGCGGATCCTTGTCATATAAGGTAACTTTTG
ACAATAACAAACAGTTTTTGATGACGACACGTGACAAATGAGAGGAAATT
GAAAATTTCCTTTGTTCTTATCAAAAGCTATTGTAAACGAACAAAGGCTT
TAGAAAAAAGTTCCCTGTACTTAAAATGCCTATTTCATCCTAAATATTCA
ATGAATAATTCGGAAAAACAAGGGCTATGTTTTAAGCTATTTGGGTGGTA
TTGCGAAATATCATAATTCCATTAGCTTCTCTGTTAGCTTATAATTCTGA
AAGTTGAAAAAAAATTTGAGTCTCTTTTAAGTCGAACCTCTACAAGTTTG
CTCTGATCTTTTAAACCTAACTCCATAACTTAAATTTTCTTAACTCCATA
ACCCGTTTATGTATTTGTATACAAAAAATTTTTTTCTAAAAACTTGATCA
CTTTTTGGTATTTCTTTACGACGAAGCTATTGAGAAACGTCGGGATTTCA
GAGATTAAGGCAGAGAGAAAAGAGAAGAGAAGCGGGCCCTATCCAGGGAT
AGTTTCCTACCCCTAGATGGGGAAATCACAGCGCTACCAGACATTGGACT
TTGTAATCGCGACACATCAGAGCCGTGCTGTATTGATGATGATACTCGCA
CAGTACGGGAGAACGTTGCATTCTCGCAGGTACTGACCATATCATACTGA
GTATCATCACCACACCACATTCAATGTCCGGCATATCTACCCATAGTCTT
GTATCAGAGTGATGGTACCCTATTCGCCTCACATGACATGGGTTGACCCG
TGCCAAGATACATTCACTAGCCAAGTGGATCGTAGCACCGAGTGGGGATC
GGACCCTGACCTCCAGCACAAAATTCAAGAACGATGACCACTACACTACC
ACGCCGAAATTAAGGCAGGAAACAATAAAATATCAACAAACAAGATAAGC
AAGCTTTCATTGTATTGCATTTCCTTAAGTATTGTAAATAATACTTAATT
AATCCATAATTTAGCAAAATACTAAAAATATTTGGTAAAAATCATTCCTG
GTTAAAAATAATAATATAATTAGCAAGATACACGCTTTTTTTTATAAGAA
TATCTTCCATAAGAATATCAGGGTGAAAATTTGCCAAATCGTAAGAATAC
CCTAAGAATACCCTTTAGGGTGAATTTTACAGAACTTAATAAGCATACAG
TCATTTTGTATTTGGTTAACAGAAAAAACTGCCTCCTTTGTTAGATATAA
ATTGAAGCTTAAAGAGTTTGCATATGAGATGAATTAAACAAATGACAGCT
TTTTAACAAATTACTTTTTCCACAAAGTAATAAGAATTGAGGAATTGATC
GAATTGTCGGTATCGCTGACATCCTCAGAGCCACGTACATAAGCCGAAGA
ATTGCTTTCAGAATCTGGCCTAGCCCGGTAGCCATTTATGGCTTTTTGAT
AGACTTGGTGGCGCTGATAAGTGGCCCGGTGTAATTTGGCTGACTCGATT
TTTTGGCTTTGCTTGAGGTGGTAGCAAATCCAGACCGACAAGACCCAGTC
CCTTTTTGGAGAAAAACAAACAGAAAACAATGACCAATAGATCAATTCTT
TTTAAATTTTAGAGATATGTTTTTGTTTTATTATAGTTTCATAAACTCTG
ATGAGGCTTTATATTTCATTATTTTGGTGTTTTTATATGATTTTTGAAAA
CGAAAGTAAAAAAATTTAAGAAGGCAAAATCCTCTAGTCTACTTCGCTGG
ACTCAGCGCCATTAAAATCATCAAAAAGTTCAGTCAGAAGTAGAATCTAG
TATAATTCTGACAAGTCTTTTTATCTGAAGAATCAAATTTCAGAAAACAC
TAAAACTTTTCCTATATACAAATATTTGTCTTTGTAAAATATGTATATAA
AAAAAAATTTTTTATCTTATATTCTTCATTATATAATTAGTTTATTCTCT
ACGGTTGGTATTAATTAGTATTTTATTATTACTATGGCAGACCAACAATA
AATAAATTGGAAAATAAAAAAAAATAAAAATATATCATATGACAACTATC
AAATGACCAATGAATTTTAACACCCAAAATCCTAAAAGACAAAAGACAAA
ACAAACCAAATTTCACTAGAGACACATTACTAGAGCAATTAAAATAAATT
TAGCGAATAGAAAACCAATATTTAAAATGAAAAGAGATCTAAACCGAAAG
AAAATGGGAAAAGTATGAAAAGATGAAGACCGAAGTCTGAGATCAGGTGC
TGTACCTAGAGTAAGCATCCACTTTCAATTCCCCCCTTCACTGCAATAAG
GTTAGTTGTACACCTCAGCATGTTATAACAATCGTGGAAGCTTGAGTCTA
AGTTCATCCCGTGAAAGATTGGGCCGAGGTCTTTCTCTTGAAAAAAGATA
ACTGTGGACCAATCGAAACCAAAAGCAGCATGTGTTTCAACAATCAAATT
GTTCCCTTCCTGAAGAAACTTGTACGGATTTTCTCCTTCTTTAAAATCAT
TTTTCTCTCCGTGAAACTCTTTGTAGCTCTCCTTTAACTGATTCAGAATA
GTACAATAGTTTGGTAGGTTATCGTCTAAGTCAACAATTATGAGTATTCC
TTCGTTTGTTCGTTTCCTCGCTTCTTTCACTGCTTCTTCAAACGTTTCGA
CAAACATTGGTTCGCAACCACCTGGAAAATTGTCTAGTGGCATGACGATA
CCTTCTTTGTATTTATATGCTCTCTTATCGGCTACTGATTTTGTTGCCTT
GACAATCTGTTGAGTATTCCTAAAATTCTGTTTGAGATTGACCAAAGAAA
AGCGTGTCGAAAAATAATCGTAACTTGAACTATGACTTGGAATATTTGTT
GTTGGCACAATCCATAAGAAGTCAACGAGTGATATCAGCTTTTCCCATTT
CAAGTTATCCATACTGAACATTTTACATTCATCGATGAACAATGCTTTGA
TGTCACGTGATTTGATCGTCTCGGCTAAGTCTGTGAATTCCTATTTAAAT
AAAATTTGTAAACATGGTTATAATTTTTGATTTCGAAACTTAACGAAATG
ATTTCCTTTTGATATTAACCCCCGCATACCCAAATGGCGTGTATATACGT
TGAAAATTAGTTAATATACCGAGTCCCCTCGCTATAACTCCTGACTTCTC
GATTTAAAAGGGCATAAACAACAACTATTGTCTAACTCTCAAGTTACAAG
CTTTTATGGCAGTTTGTAATTTTTGATTTAAAAAAAATGCTATGCGCTGA
AAAGGTTAAAGGTTTTTTAAGTTGGCTGACGGTAAATTATGAAAAAAAAG
AAAAAAATCAAAAAATCCCAAAGATTTGCTTGAAGAAACCCGATTTGATT
TTAATGGTAGTCTTTTTTCAGATTTTTTGCTCAAAGTTGTAAATACCGAG
TGTTTCAAAAAAAATTATAGAGATATTGTAATTTCTTGAATTTGACCGAA
AGAAATTACATACTACATGGAAACATTCTAATGAGTTGACGCCAATTTTT
ATTACTTAATATTGATATGGAGAAAAGGTTTATTGGTTGATCAAAGAATT
CCTTAAAACTTACCCACTCATCCTGGAAACGTTCAACAAATATACCATGA
CCCTCCTCAAGATCGATTTTCAGACGGTAATATAACATTGACTTTAGTCT
TTGAACTCTCAAATCCAAAAAAGCCATCATAACTTTTCCATTGTACTCAA
GTCGTTTGTTTAATTGTATTGCTTTTTGCGTAAGCAAGATTGACTTTCCA
CCACCAAAAGGCCCAACAATGATCACTCTCCTGTATCGCGGGTCATCGTT
GTTCATTATTGCCATCTGTTGGTTGGAGTAGAATAAAATGTTGTGGCTAG
TTGAAACATTTTCGATTGCATTGCTTGTGTATTCGACCCATGTTGAGCTT
GTGATGGGTGCGACTTGATCTTTTTTCGATACGTGAATTGCAAAAACCAG
GATTTTAAGAAGGTTCTTTGCTTCATCCAAAGGATCCGGTGTGGACGTTG
CAGCAACAGCTGGGAATCTGTTGAAAATACTAGTTAACCATGGTTGAATG
TTGGTTTCCATAGTGATGTAGTGTAGAGTGTTGACTGAAAGTGCATCATT
TTCGACACAGATCACCGGGAAATATGTCCAGCCTGGTTTGAGTTGATCTC
CTAGTCTCTCCTCGAAGATCTGATGACTTTTTTCCAATTGCTTGAAGACT
TTATCATCTGCAATTGTTCGTTTCAGCTCAATCGAGATGATAAGTTTCCT
TTCCCAAGATATGATCAGAAAGTCCGTCTCTTTATGCATTTTATATTGCA
CGTTTGTCAGAAAGATGAGCGAAGAAAGAACAGCTGTATTTTGGAGAATG
TCATCTTTTAATGGTAGAAGCTGATCATAAAAGAAATGTTCAAGCTTTTC
GCCAACTTCTGACAGTTCCAATGTGAATAACCATCGAAGGTTTGAATCGT
TGCTCGGTGTATCGTCAATCATTTGCTTGATCATCTTTCTGAGGTTTTTC
GCCCATAGATTTTGTTGGAGAAGTGTTCCAAGAGGTGATGTGGGCGAGAT
CACTGCAAGACATCCTTGAACGAAAACTCCTATATCGAAAGTGGTTTGTG
GCAGGGTCACTTGGTCAGTTTTAAGCTCTGCAATAACCAGATACATGATT
TGAAGGTTAACAATAAATTTATCAAACGCCTTCTTGTCGATAGTATTAGC
ATTGTTTTGCGTTTGCATAAAAGCTTCCAATTCTTTGGTCAGCCAATACG
TCGGTGAATGTTGTTTCAAATTAACCAAAAGTCTATCGATGTCTTTTTTG
ACGTCATAATTAAGGATAGCGGTAGAGGACTTTTTGTACTGACTCGAAAC
AAACGTGGGTGGTATGAAAACACTTTTGCGTTCACTTTGAATGAAAAGAG
AACTGTCTCCATACTCCCTTTCGAGAATGAAGTCGGCTGCATCGATAGGA
TTCGCTGTGCAATGTGTATTGCCAAGATTAAACTGTTTTGCTTGTCTTTC
TGACGTTGATTGTCTGTTATTGAGAATCTGCTGATACAACGATTTGTTGA
GAGTACATCTGGTTGGATCGATTGTTAACGGTTTCAATGACAAAACTTTC
TGCTTAATAGAAGCCAAATTTTGTGTCTGAGCAGCCATCTTTATTACAAC
AACTTGAAAATGCGTTCAAAACATTCAAACTCTTGTACTCATAAACGATA
TGTAGATAATAAAAGATTGTTGTTTTTTTTGCTTCTCAGAGCAATATTTC
GAGGAAAACAATCATTTAAATAATGCATAGAATGCATCTTTTTTTTATTA
GAGCAACTCTATCATATAAGAACAAATATGGTAGACTTTGTTAGCCAAAA
CGTGTTTTCGATCAGAACGTTTATCAATCATAAGCATAGAAAAACCCTAG
ACTTCAAAACCAAAACTTTAAGAATGAGTCTAGGGAACCATTTCAAGACT
TTACGGGAAATTACGCCAACACACAAACATTTTACGCACATGTTTAAACT
TTAAAACCTAAAGAGTCAAGAAAATCCGTACGCTTCGAAAATTGTGACGT
TCTTATGTAACACGTGTATCTGAATGTTTGTTTTAGACTTCCCCAGTTTG
CATTGACAAGCTTCTGAAACTTGAGTGTACGTTTTAGATTTCCCTCTAAC
CTTATCATTGATTTAGTAATTTACACGTTTTTTTATAAGAACATCCAAAA
TTTTTGAAGCCTTTGAATGTTCTTAACTTTTTAAGTTTTAAGCCTAAAAA
TATTCTTACCATGCTCTTTTTTTCGTCATTTTTGTCCATTTTCATATGAA
GTTCGGTGTATTAGAGTCTGCAAAGCCTTAAAAATGTTTTTAACTTGTTC
TTAACATTTTGTTCTTATAAAAAGAAACGTGTAGCATGCTACCATGTATC
AGTCATTGCAACATTATATAACAAATAACTACTATGACCACCGAAATAAC
TATATAATAATAACTTTATTATTATGTTATGACTGACCCGTATTATAGAA
ACTTTTAGTAAGCGATATAGGTAATTTTGAATTTTTCCCGAAAAAAAACG
TCATTTTTCTCATACATCTTTAACCGTTTATATTTTCAATTTTTTATTTG
ATTTTATCACTAGGCTGGAGCATACATTGTGGAGATTTTCAACACACAGG
CTGGAGGTTTATCTCTTCTCTTCCTGGCTTTCTTTGAATCACTGGCCATT
GGTTGGATTTACGGAGCTGATCGTTTACTAGACAATGTGGAAACCATGAT
CGGTTATAAACCAAGCCGTTGGTGGTTGTTATGTTGGAAATATTTTGCAC
CAATCATCATCTTAGGTATGCGTGACCCTTAGACCACGAGGGACGCGTAT
ATGCGTCCAAAACAAGCCAAAATACTGAGTCTCACACTTGAGGCCATAGC
TACTGACCACTTGATTTAAAGGGGCATAAACCGAATGCTTTTAGAAAGAC
TATACAATTAGCTTTCTAATGTTACCAAAACCATCTTCTAAATCAAAAGC
TACCAGATTTTATGGCACTTTAAAGTTTTGAGTTTCAAAAAAAAATCAGA
AAAATTTCAACTTTTTCAAAAAAACAGCGCGCACTAAATGTTAATATGCA
CCATTGCAATGTCTTCCACGGATCCAACAGCTGATTGGTTGAAAGTGACG
TATTGACAGCTACTGATTCCGTGATATAATGTCAGAAGACAATGCAATTG
ATTTCTATTTGATTGAGATACTCAACTTTGAAATGAAGATCTCAAAGCAC
TAACTGTAGATTCGATATTTGTTGTCCATAGCCTAGTCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGC
TAGCCCCTGTATCTATAAGGCTGGAACACCGGATTCTTCCAGTCGTTTAT
ACAAACTAAATCCCGTTTTATTATTATTAGTATTACACGCATTATAAAAG
ACTCCAGTCTATCCATAGCCTAGTTATTCAATTGTTTTCACGGCGTCCAC
GGCCAGCCGGCATGGCTATCTATCAAATGAATGGAACATCGGAAGGAGCA
GGGATTCAAACCGTGAACCCTGGTTTTAGGAACCGCGAACCCCCGGTTTT
AGGAACCGCTAATCCCCGGTTTTAGGCACTGGCGCCGTGACCACAGGGTC
ATTGTTCCATAAGACTGACTAGTATACTCATTTCTTGCGCATCTGCAATT
TTACATTAGATTTCTTTTGTGCATGAGTACACATATTTTATTCATAGTGA
CCTTTCTGTACGGTATCGCTGACTGGGGCGGAATCAAATTCGGTAAAGAA
TATGTTTATCCCGGATGGGCGGAGGGCGTTGGCTGGTTGTTGGCGTTCAG
TTCCATGGTTACAATACCGATCGGAATGGCTCACACGTTGTACAAAGCAC
ATAAAACGTCAAGTTATTCCGTTTCGGGTGGCAGCTCTTCATTTAGAGAG
GTAAGTTTTCCCCGATTTCTCATTTTCTAATCCCAATCGGAATAAATCAC
ATTTTGTTGTGTGAAGCACATAGAACATCAAGTTATTCCGTTTCAGACTA
CAGCTTTTAAGAAGTTGAGTAGGTCTATTTCATACACGTTTTAGATAATT
TTAAGAACATTGAAACAGGCGAAGAACATTTTTAAGCTTAAAACTATAAA
AGTTAAGAACATCTGAAGGCTTCAAAATATTTGGTTGTTCTTATAAAAAA
ACGCATTTATGAAGTGGATTTATTTCTTATTTTATAATCAGAAATTTGAT
GCCTTTTGACAAATATTTTGAAAACGATGTGCGTTGCTAACATATGAGGA
CCGCAAAAGAGAAAAGAGAGATTGAACCATAATGATATTTTAGATGTAAG
ACGTATATAAACTTTTGAGTGAACTGAGAAAGTGCTAGATAAACAACAAC
ATAAGACACGTGTATGGCGTAAAACTCTCTGACCGAATTGGTTGGCAAAA
TTCATGATATTCATTACGTAATGTTTTCTACGGAGACACCCTGGTTTTTG
CTACTCTGTACCAGAGTGTATCTCACGTTTATCGCTTTGTAGTACACTCA
GTGTGCATTGTCTGTTTGATAAAAAAATTCCCGTACGGAGACCTCTGTGA
TGAAGTATGATTTATAAATAGCAGCACTTGTCTTCCCCTCTCACAAACAC
TCCATGGCAGCGGTCGGTTTAAAAAATCTCAAATGACAAAAGACAATGAC
AACAGACCCTCTACGGCAATGAATTTTAAAATAAGCTATAGATACTGGGT
CTGTGTACCGACAAGGTTTTTGCCAGTAGTGGCTAATTTCCAACAATTTT
TCTCTAGCTTAAATTTCTTGAATTTACTACTACTAATGTGCAAAAAACCG
GGGTGTTTTCGCAAAAGAAACCCCCCGTCAAAAGATTATGTTTCCAAGTC
TCACGTTGTAAATATCTTCTTTGTTGTTCTATTCCATGGGCTTTTCCAGA
AAAGTTTTGTACATGGGGGGTAGAGGATATATTGGATATTTTGTCCGGGG
TGGGGGGGTTAGTGGAAAATCTGCAAAATTTGCCTTGTTTTTGTTGTTTG
CTCTGTTTAGGGGTAATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCC
GGGGGTAAGCTCTGTTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGT
AATTTTGAATGTCCGGGGGTCAGCTAATGATTGTCCGGGGGTAAGCTCTG
TTGTCCGGGGGGTCATAATTAACTATGTTTGGGGGTAATGGACATTATAT
CCTCCCCCCCCCCCCCCATATTAAAATTTTTTCTTGAAAAGCCCCATTTC
GTTTAAGTTTACACAACCAACAATTTCCTGCCTTCCTTTCTAATGTCTGC
TCTTCGAAGAGAACTTTTGAAGAAAATACAGGTGTAGTCTCCATAACTCG
AAAACGCACGAGGAACACAAATTTGTTCGAGTTAAGGAAATTTCGAAATA
TGGAGTATGGTTTATAAGGCTCTGCTAATGGGACTAGAGAACTTATTCGA
GTTATAGAGTTCCATTATAGCAATAAGTTTTAATATACTCTCAGGTTCCG
AATAAACGGAACCCCCCCCCCCCCCCTTGTTAATTTTTCGATTTTTTTCC
AACCCCCCGGGCCTTTTTAGGGCCCCCCCCCCCCCCCCCCCTTTTTAATT
TTTCGATTTTTTTCCAACCCCCCGGACCTTATTAGGCCCCCCCCCCCCGT
TTATTAATTTTTGAAAAATTCCCAGCTACCAAAAAGAAAATTCCTTGTTT
TACTCTAAAAAGCCTAAATTTAGTCTATTTTGACCCTTTTTAACGTTTTT
AAAGGTTCATTTTTCAACACCCCCGGAAATTAGCCCCCCACCCCTGTTTA
TTCGGCACTTGGGAGTACTATGTCAAAAGCAGAACTTGTATTTCTTTTTC
TTTTTTTCAGACTTTGAGAATCGCATTTAGTCCCAACGAAGAGAGAATCC
AAGAAATCGAACAAGCTCGCATGGAAAAAGCTAATACTGCTTTACTTGGC
AACGAAAAGGCTTAAAATGGTTCGTTACTATATCTCGTGTAGCCTGTACT
ATTCCTCCCAATAGGGATATTTTATCCCACTACCTGAACTTCGCATCATC
TTTCAAGGACGCAGAAAAAAAGTTTGGTACATGCTATGTCTTGCACTGTC
TCTGAATTTTCGTTTTATGTGGATTATGGTCAAGGGACAGTTGTGAAATA
TAACCATAAAGTTATTCCACTGAAGACTTGTGGGAAGTTTCAAGCCAATA
GGAACACTATCAAAAAAGACCGATCTGTTATCAGTATATTCAATAGTGAC
GTTTAGTTCAAATTTGATGTCATTACGAGCCAATAATGACTGACATCAAT
TAGATTTAGAACAATAGACCTTATTGGAGTTTTTTTTTCTTAAAAAGTGA
TGTACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAGT
AGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAAGCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001643XLOC_001643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003000-exon-sc0000024-1575043694:319176..319191TCONS_00003000-exon-sc0000024-1575043694:319176..319191Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1575043694:318279..318410TCONS_00003000-exon-sc0000024-1575043694:318279..318410Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1575043694:310877..311078TCONS_00003000-exon-sc0000024-1575043694:310877..311078Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1575043694:309042..309244TCONS_00003000-exon-sc0000024-1575043694:309042..309244Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1575043694:306496..307081TCONS_00003000-exon-sc0000024-1575043694:306496..307081Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1510915933:319176..319191TCONS_00003000-exon-sc0000024-1510915933:319176..319191Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1510915933:318279..318410TCONS_00003000-exon-sc0000024-1510915933:318279..318410Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1510915933:310877..311078TCONS_00003000-exon-sc0000024-1510915933:310877..311078Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1510915933:309042..309244TCONS_00003000-exon-sc0000024-1510915933:309042..309244Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1510915933:306496..307081TCONS_00003000-exon-sc0000024-1510915933:306496..307081Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1491911889:319176..319191TCONS_00003000-exon-sc0000024-1491911889:319176..319191Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1491911889:318279..318410TCONS_00003000-exon-sc0000024-1491911889:318279..318410Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1491911889:310877..311078TCONS_00003000-exon-sc0000024-1491911889:310877..311078Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1491911889:309042..309244TCONS_00003000-exon-sc0000024-1491911889:309042..309244Clytia hemisphaericaexon
TCONS_00003000-exon-sc0000024-1491911889:306496..307081TCONS_00003000-exon-sc0000024-1491911889:306496..307081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:306496..319191 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0698617	0	6.2677e-10	0.0472851	0.453805	0	0.300506	0.957539	0.00931448	0.311578	0.0225686	0.454844	0.906289	1.19498e-05	0.279595	0.204052	0.75687	0.596787	1.43201	0.194052	0.96929	0.102903	0.490115	0.232342	0	0	0.864583	1.0956	0.42725	0.464789
Blast
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BLAST of TCONS_00003000 vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 8.494e-35
Identity = 76/212 (35.85%), Postives = 122/212 (57.55%), Query Frame = 2 
Query:    2 GLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFNT-QXXXXXXXXXXXXXXXXIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTXXXXXXXXXXXFRETLRIAFSPNEERIQEIEQARMEKANTA 634
            G+DSQF  +E  +++L DEYPR LR  +EL    +C I++L+G+  + Q G Y+ ++F+   A G+SLLFL FFE ++I W YG +R  DN++ M+G +P  WW LCW +F PII+   F++       +  G  YV+P W +GVGWL+A SSMV IP  MA+       +            ++ +++   P+E+ ++        +A ++
Sbjct:  393 GIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLKGS-----------LKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592
The following BLAST results are available for this feature:
BLAST of TCONS_00003000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A18.494e-3535.85Sodium- and chloride-dependent GABA transporter 1 ... [more]
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