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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002984 ID=TCONS_00002984|Name=TCONS_00002984|organism=Clytia hemisphaerica|type=transcript|length=7339bpRun BLAST on NCBI transcript from alignment at sc0000024:177010..217265- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002984 ID=TCONS_00002984|Name=TCONS_00002984|organism=Clytia hemisphaerica|type=transcript|length=40256bp|location=Sequence derived from alignment at sc0000024:177010..217265- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002984 vs. Swiss-Prot (Human)
Match: CELR2 (Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1) HSP 1 Score: 849.351 bits (2193), Expect = 0.000e+0 Identity = 622/2045 (30.42%), Postives = 979/2045 (47.87%), Query Frame = 1
Query: 19 GVLFLKCDLDYKRKNMYNLKLRVTDADKKPGYAYFKIEVTDANNNSPRFGQDVYQWNVLENADIGTVIKSVLATDADTGENARITYSLQPGSPIDTFGIVNDTGAITTKKKLDRETTKSYTLVVKASDHGKPFKKFGFAXXXXXXXXXXXXKPVFTKNLYTFTIEEDAKIGAVVGHLQATDNDEGRNKEVRYQFKERKHEY--FSINAESGSIRTIKLLDRETIERFTFEVLAIDQGTPALQTSTSVIIDIEDVQDSNPVFTEKVYNFTIPENSLV--EVGRIRATLADDAFRHSMVYSFTK--YQTTFRIASLQGIIRANSPLDYEKQHHYQLHVRVVSDSGREDTAXXXXXXXXXXXXPPILEDFYIFLNALNGKYDPMF------RVPAEDPDVSSVLRYGIITGNEHDFISLNDETGELFLKKSIINT-AAEIRILFEVSDGKYADRAYGHILVSEVTDVMVKNSMFIVLNNATRNDFLKATVLRKFKDSLAQIFDVDGSKIVDASKIFILSIEAFRDPRKGNKNAEMLEIAIAVKSKMADTYMTADFLKDKFYLNATAFTR-SGFDLVSFDFWGEYFCGSESCKNLERCSIQWSNTNQISSTIKSKYVIFRGIYFKPALKCECPHRFHGMKCDKPFNMCFMERCNSNGKCISTDDGFSCKCDHGYTGDFCAFDRQTSSCPIQLNLAKNPCGLRGVCSAKSGGGFDCTCPAKGTDTEYCKLSTRYFPKGSYIAMPGLKKQQRNFDISFQFRTFQANAVLLYNGRYSNQNDFIAVEIVDGQVLFSVNFGKSKDNKEQVTTVQSFNAGGVNDGKWHTVKVQLKNKV---------------ISIAVGESCDIETASVLNSQGTHRYCAASTRVQGEMKTLDLTAPALIGGLPDMQRTFLSPVKDFIGCMRNIVFDHNSLDLSNYLHNFGXXXXXXXXXXXXXDAYCTKYVNGDCHETLDGPKCSCRSRFVGQRC-EKAAEPIRLNANSVLVVDDSQASGSGFSAWRYSMVVKTTQKDAVILEETINGVDG-RLMLKNGYLQYHHKSKLI----LVLDSFFMANGKWNQIQIKWTAN----RLYLSSLYDQHXXXXXXXXXXXXXXXXXF---------GGTGNNKLLACIKAF----TYNG-NDINLLHTSNKHVQKGCLESSLCDTLDCGTGT-CQITSGVAQCHCNGAGYKGPQCLDICKDSPC-NTGTCKHSSSSLSGYVCDCPIGFTGEHCEIAKQKKCPPKTFGKDYCGPCDCKLHENFNETCDPDGQMEPYSYPGKCFCNDDYYLKGG--VCVKCNCLLEGSESSVCDKKTGQCKCKANVIGMKCDKCPGAWQEI-TNGCGEIN-NSCPRTYVDGIWWRRAARGVTQRERCPFNAVGNATRHCDPRKGWQAPDFFDCTSQLFSNIQTLLKPVLTSGKRMTKDLVTSISYKLDFAVSAPKLTFTPHAFYGKDIMIGYDALRLMISYEGNQTAAHLVSADEEQFVGNLLKSAGKLFQTSLSPFWDSIQKKYSGTAGLMKEMERFVNILSKNLAYIKRNRNRRSVTLNTYSQATSNIYFEIKPMVRGN----------------SVDEEKFITLPDSLSSRHIDYYMWKDPSVSVRISDAIFLD--HDELFRINEVNIGLIIYKTLGHLLPTNFDQDNREEGRKYALNVYSDVVTLTIPSIKSLHPLT-EIQITYKNVSQLNSTSTSLVCAFWNYSLSGTVSGGWSPNGCVTKMEVNSSDVTCVCNRMASFALV----GFQYTEIIPRVYQPAFLVYIXXXXXXXXXXXXXXXXXXXSQLKSNANSIHKNLAFVLLLGWIVFTFAINRPDVGKANCRIIAILIHYCLTCAFSWLMVEALHMYRMILEPRDINYGQMMFYYFIGWGAPVIVVGVTAGLKPDGYGTPEFCWISAKVNDSVWTYVXXXXXXXXXXXXXXXXXXXSSCEKANIKG--KKAKLARIRYRLAISFFFLFIMMVTVFGGLLEVSFDMTLLTYIFAGTCALEGVYMFLFYVCFNRKVRREAYNAYKRYSTGNKSYGLK 5901
G++ L LDYK + Y L + +D ++ A + VTDAN + P F Y NV E+ GT + + ATD DTGENARITY ++ I F I DTGA+TT+ +LD E SYTL + A D+G P +K + I V DVNDN P F ++ Y ++ ED V + ATD D G N V Y F+ F + + SG +RT++ LDRE + ++ A+D+G P +T V + + DV D+ PVF + ++ + ENS + V R+ AT D+ ++Y + F++ G + A LDYE + Y L ++ S + A V+V + D ND+PP+L +F I N F RVPA DPD+S L Y GNE + LN TGEL L +++ N E + VSDG ++ A + V+ +TD M+ +S+ + L + + FL + +L F ++A +V + +++ D G+ L + ++ ++ L+++ YLN + T S ++ FD + C E C+N RC + + + I S V+FR I+ L+C CP F G C+ ++C+ C +G+C S + G++C C GYTG+ C ++ C C G C GGF C CP+ + YC+++TR FP S+I GL +Q+ +F ++ F T + + +LLYNGR++ ++DF+A+E++ QV + + G+S TTV F GGV+DG+WHTV+++ NK +++ + CD A S + CAA G K+LDLT P L+GG+PD+ +F ++ F+GCMRN+ D +D+++++ N G+ CPA C+ C + G C D C C F G+ C ++ A P +S++ S W S++ +T Q D V+L+ G L L+ G++ + + L L+ +G W+ Q+ A+ LS Y Q L L +++ GG C++ T G N ++ H + +V++GC CD+ C + C C C+ GY G C ++C +PC + C S+ GY C+CP + G +CE + CP +G CGPC+C + + F+ C+ G+C C +++Y G C+ C+C GS S VCD + GQC CK VIG +CD+C + E+ TNGC E+N +SCPR GIWW R G+ CP + G A RHCD +GW P+ F+CTS FS ++ + + +R L + S +L + T ++G D+ + Y ++++E Q L + + F NLL+ L T+ W+ IQ+ GTA L++ E + + L++N+ R L+ ++ T NI + + +GN D E + LP+S+ P + + H EL + E +IIY+TL LLP N+D D R + + VV++++ + L P + +T + T +C FWN+S+ + +GGWS GC N S V+C CN M SFA++ + EI+P L Y+AL V + L+ F L L+SN + I +NL L L +VF IN+ D+ A C +IAIL+H+ C FSW ++EALH+YR + E RD+N G M FYY +GWG P + G+ GL P+GYG P+FCW+S + +W++ P+ ++ + + ILA +SC A +G KK ++ L SF L ++ T LL V+ D L Y+FA ++G ++FL YV +++VR+ A R + + + K
Sbjct: 665 GLVSLALPLDYKLERQYVLAVTASDGTRQ-DTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFME--DSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIP-QKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPPARTPMEVTVTVLDVNDNPPVFEQDEFDVFVEENSPIGLAVARVTATDPDEGTNAQIMYQIVEGNIPEVFQLDIFSGELTALVDLDYEDRPEYVLVIQATS-APLVSRATVHVRLLDRNDNPPVLGNFEILFNNYVTNRSSSFPGGAIGRVPAHDPDISDSLTYSFERGNELSLVLLNASTGELKLSRALDNNRPLEAIMSVLVSDGVHSVTAQCALRVTIITDEMLTHSITLRLEDMSPERFL-SPLLGLFIQAVAATLATPPDHVV------VFNVQRDTDAPGGHILNVSLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTAISAQRVLPFD---DNICLREPCENYMRC-VSVLRFDSSAPFIASSSVLFRPIHPVGGLRCRCPPGFTGDYCETEVDLCYSRPCGPHGRCRSREGGYTCLCRDGYTGEHCEVSARSGRC------TPGVCKNGGTCVNLLVGGFKCDCPSGDFEKPYCQVTTRSFPAHSFITFRGL-RQRFHFTLALSFATKERDGLLLYNGRFNEKHDFVALEVIQEQVQLTFSAGES------TTTVSPFVPGGVSDGQWHTVQLKYYNKPLLGQTGLPQGPSEQKVAVVTVDGCDTGVALRFGSVLGNYSCAAQGTQGGSKKSLDLTGPLLLGGVPDLPESFPVRMRQFVGCMRNLQVDSRHIDMADFIANNGTVPGCPAKKNVCDSNTC--HNGGTCVNQWDAFSCECPLGFGGKSCAQEMANPQHFLGSSLVAWHGLSLPIS--QPWYLSLMFRTRQADGVLLQAITRGRSTITLQLREGHVMLSVEGTGLQASSLRLEPGRANDGDWHHAQLALGASGGPGHAILSFDYGQQRAEGNLGPRLHGLHLSNITVGGIPGPAGGVARG-FRGCLQGVRVSDTPEGVNSLDPSHGESINVEQGCSLPDPCDSNPCPANSYCSNDWDSYSCSCD-PGYYGDNCTNVCDLNPCEHQSVCTRKPSAPHGYTCECPPNYLGPYCETRIDQPCPRGWWGHPTCGPCNCDVSKGFDPDCN--------KTSGECHCKENHYRPPGSPTCLLCDCYPTGSLSRVCDPEDGQCPCKPGVIGRQCDRCDNPFAEVTTNGC-EVNYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGTAVRHCDEHRGWLPPNLFNCTSITFSELKGFAERL----QRNESGLDSGRSQQLALLLR--NATQHTAGYFGSDVKVAYQLATRLLAHESTQRGFGLSATQDVHFTENLLRVGSALLDTANKRHWELIQQTEGGTAWLLQHYEAYASALAQNM---------RHTYLSPFTIVTPNIVISVVRLDKGNFAGAKLPRYEALRGEQPPDLETTVILPESVFRETPPVVRPAGPGEAQEPEELARRQRRHPELSQ-GEAVASVIIYRTLAGLLPHNYDPDKRSLRVPKRPIINTPVVSISVHDDEELLPRALDKPVTVQFRLLETEERTKPICVFWNHSILVSGTGGWSARGCEVVFR-NESHVSCQCNHMTSFAVLMDVSRRENGEILPL----KTLTYVALGVTLAALLLTFFFLTLLRILRSNQHGIRRNLTAALGLAQLVFLLGINQADLPFA-CTVIAILLHFLYLCTFSWALLEALHLYRALTEVRDVNTGPMRFYYMLGWGVPAFITGLAVGLDPEGYGNPDFCWLSI-YDTLIWSFAGPVAFAVSMSVFLYILAARASC-AAQRQGFEKKGPVS----GLQPSFAVLLLLSATWLLALLSVNSDTLLFHYLFATCNCIQGPFIFLSYVVLSKEVRKALKLACSRKPSPDPALTTK 2637 HSP 2 Score: 183.341 bits (464), Expect = 9.419e-46 Identity = 129/380 (33.95%), Postives = 191/380 (50.26%), Query Frame = 1
Query: 4 IDPFQGVLFLKCDLDYKRKNMYNLKLRVTDADKKPG----YAYFKIEVTDANNNSPRFGQDVYQWNVLENADIGTVIKSVLATDADTGENARITYSLQPGSPIDTFGIVNDTGAITTKKKLDRETTKSYTLVVKASDHGKPFKKFGFAXXXXXXXXXXXXKPVFTKNLYTFTIEEDAKIGAVVGHLQATDNDEGRNKEVRYQFKERKHEY-FSINAESGSIRTIKLLDRETIERFTFEVLAIDQGTPALQTSTSVIIDIEDVQDSNPVFTEKVYNFTIPENSLVEVGRIRATLADDAFRHSMVYSFTKYQTTFRIA----SLQGIIRANSPLDYEKQHHYQLHVRVVSDSGREDTAXXXXXXXXXXXXPPILEDFYIFLN 1116
IDP GV+ + +D + Y L + +D + PG A + V D N+N+P+F + Y V E+ G + V A+D D G NA + YS+ G+ F + TGA+ LD ETTK YTL V+A D G+P V + V D+NDN P+F + T+ E +G +V H+QA D D G N + Y+ H++ F+IN +G I LDRE ++ ++F V A D GTPAL S SV + + DV D+NP FT+ Y + E++ V + + D + Y T T R + S G++ PLDY+ + Y L V SD R+DTA + V+V D N H P+ + + +N
Sbjct: 342 IDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAV-TASDGTRQDTAQIVVNVTDANTHRPVFQSSHYTVN 720 HSP 3 Score: 154.836 bits (390), Expect = 4.269e-37 Identity = 162/604 (26.82%), Postives = 266/604 (44.04%), Query Frame = 1
Query: 4 IDPFQGVLFLKCDLDYKRKNMYNLKLRVTD--ADKKPGYAYFKIEVTDANNNSPRFGQDVYQWNVLENADIGTVIKSVLATDADTGENARITYSL---QPGSPIDTFGIVNDTGAITTKKKLDRETTKSYTLVVKASDHGK-PFKKFGFAXXXXXXXXXXXXKPVFTKNLYTFTIEEDAKIGAVVGHLQATDNDEGRNKEVRYQFKE-RKHEYFSINAESGSIRTIKLLDRETIERFTFEVLAIDQGTPALQ-TSTSVIIDIEDVQDSNPVFTEKVYNFTIPENS-----LVEVGRIRATLADDAFRHSMVYSFTKYQTTFRIASLQGIIRANSPLDYEKQHHYQLHVRVVSDSGREDTAXXXXXXXXXXX---XPPILE-DFYIFLNALNGKYDPMFRVPAEDPDVSSVLRYGIITGNEHDFISLNDETGELFLKKSI-INTAAEIRILFEV--SDGKYADRAYGHILVSEVTDVMVKNSMF------------------IVLNNATRNDFLKATVLRKF-KDSLAQI-FDVDGSKIVDASKI-------FILSIEAFRDPRKGNKNAEMLEIAIAVKSKMADTYMTADFLKDKFYLNATAFT 1674
+DP G + +LD + K+ + ++ D ++ A I VTD N++ P F Q Y+ ++ EN ++G + +V ATD D NA I Y L GSP + F I +G I T+ +DRE +SY L V+ASD G+ P + A V ++V D NDN P F++ Y + ED GA V + A+D D+G N V Y F ++A++G++ + LD ET + +T V A D G P L S V + + D+ D+ P+F + T+ E+ ++ V I A D+A R + + F I + G I + LD E+ Y V TA +V V ++ +P + ++ + LN + V A D D SV+ Y I +GN + S+ ++G + ++ ++ E + + V SDG D A +V VTD +F +VL +AT D + + F +DS+ Q D D + +++ + L+I A + + LEI + + A ++ D + Y + FT
Sbjct: 234 LDPVTGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNA-RLEYRLAGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGTRQDTAQ---IVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEILVNDVNDNAPQFLR-DSYQGSVYEDVPPFT 832 HSP 4 Score: 109.383 bits (272), Expect = 2.533e-23 Identity = 96/331 (29.00%), Postives = 146/331 (44.11%), Query Frame = 1
Query: 475 PVFTKNLYTFTIEEDAKIGAVVGHLQATDNDEGRNKEVRYQ----FKERKHEYFSINAESGSIRTIKLLDRETIERFTFEVLAIDQGTPALQTSTSVIIDIEDVQDSNPVFTEKVYNFTIPENSLV--EVGRIRATLADDAFRHSMVYSFTK-----YQTTFRIASLQGIIRANSPLDYEKQHHYQLHVRVVSDSGRED------TAXXXXXXXXXXXXPPILEDFYIFL---NALNGKYDPMFRVPAEDPDVSS--VLRYGIITGNEHDFISLNDETGELFLKKSI-INTAAEIRILFEVSDGKYADRAYGHILVS-EVTDVMVKNSMFI 1395
P F Y T+ E+ G V L+A D DEG + Y F R +++FS++ +G++ T + LDRET F V A D G P ++ I + D D +PVF ++ Y ++ EN V EV +RAT D +++Y + F I G+IR P+D E+ YQL V SD GR+ AV +D ++ P E Y+ + G P+ RV A D D S V+ Y I++GN L+ +TG L + + T E + DG + LV+ +V D+ +F+
Sbjct: 179 PQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDALFDSRSNQFFSLDPVTGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRSGVIRTRGPVDREEVESYQLTVE-ASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGA--PVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFV 506 The following BLAST results are available for this feature:
BLAST of TCONS_00002984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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