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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002968 ID=TCONS_00002968|Name=TCONS_00002968|organism=Clytia hemisphaerica|type=transcript|length=2587bpRun BLAST on NCBI transcript from alignment at sc0000024:764417..776661+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002968 ID=TCONS_00002968|Name=TCONS_00002968|organism=Clytia hemisphaerica|type=transcript|length=12245bp|location=Sequence derived from alignment at sc0000024:764417..776661+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002968 vs. Swiss-Prot (Human)
Match: NRF1 (Nuclear respiratory factor 1 OS=Homo sapiens GN=NRF1 PE=1 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 7.057e-70 Identity = 147/339 (43.36%), Postives = 190/339 (56.05%), Query Frame = 1
Query: 793 LSNIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPPLVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEEVPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADNQMEQHNTQQ-TQVFTSQYPHLVHTINNADGTVSIIQVDATGAVXXXXXXXXXXXXXXXXXXLAEVAASQGEV-----IYGSHSMDHHSTLTHD--------------------HGGVVT-------------SISESALH-DGQLLL-GDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVSIANGGGGVQ 1686
L N+V+ K++I+EDLE+ALA+ AP+ + N ELPPL I+GIP VDKMTQAQLRAFIP MLKYSTGRGKPGWG+++ KP WWPE++PWANVRSDVR E KQ++SWT ALR +V+NCY+ HGRE+LL AF Q + T + SQ +V T +N DGTVS+IQV TGA AS+ T VA + A + GEV M +T + G VT +++E+ L GQ++L G+ +A AL GVQD N +V IPV +M Q + S+A G G VQ
Sbjct: 152 LENVVRKYKSMILEDLESALAEHAPAPQEVN---SELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQT--VVQTFSNPDGTVSLIQV-GTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDAN-GLVQIPV----SMYQT-----VVTSLAQGNGPVQ 474 HSP 2 Score: 65.0846 bits (157), Expect = 7.057e-70 Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 3
Query: 450 SMSDGLSDDPSSPESTAFDDTDLLTAPSVGMHDDVTDEVTXXXXXXXXXXXXXXXXXXXXKRRKKSYHFETNPSIXXXXXXXXXXXXXXXXXEYTTRVGQQACIVVCCPGKLGASFK 800
SM D PSSPE T++DD+D+L + + DEVTA LAAAGP+GMAAAAA+ TGK+RK+ + FE+NPSIRKRQ TRLLRKL+ L EYTTRVGQQA ++ P K FK
Sbjct: 36 SMLSADEDSPSSPEDTSYDDSDILNSTAA-------DEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFK 145 The following BLAST results are available for this feature:
BLAST of TCONS_00002968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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