TCONS_00002968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002968
Unique NameTCONS_00002968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002968 ID=TCONS_00002968|Name=TCONS_00002968|organism=Clytia hemisphaerica|type=transcript|length=2587bp
GAAAATTCCGTTTCCGTTTGGGAGGAACCAGCGGGTGCGAGGAAACTGTT
TTTTCGAAAGAATTCAAGCGCCATCTTTATTCATTTTCTGGTACTCGTGG
TCACACCTCACCCTTCGCTATGATCTTTCGAAGTTAATATTTGATTAAGA
GCGTGTGTCCAGTATTCACGGAAAAGTTCTTTTGTTGACGATTTTTCACC
CGCACATGCTCAGCAAGGTTTGAACGTAGTGAGCAAGCTCAAAGAAATCA
ACGCATCCCAATTTCTACAAGTCTGCGCATCTGAACCTAACAACCAAATA
ACAATCACTTTCTCCATTTTTAGATATTCCTCACAATGGATTTGGATCCC
CACGTCCATCACACGACAGTCAAACTGGAAGAGATGCCTCATGCAGTTCC
TGTCCATCAAGTTACAAGGTCCAATTCTCTCTCCATGACCCACGTTGGAT
CAATGTCTGACGGCCTATCTGATGACCCCTCTTCGCCTGAATCAACAGCT
TTTGATGATACTGATCTTCTTACTGCACCAAGTGTTGGTATGCACGATGA
TGTCACAGATGAAGTCACCGCTCAATTAGCCGCTGCTGGACCCATCGGAA
TGGCTGCTGCAGCCGCCATCATCACAGGCAAGAGACGAAAGAagagctac
cattttgaaacaAACCCCTCCATCAGAAAACGCCAAGCAACTCGACTTTT
ACGGAAATTGAAACAACTCTTAACGGAATACACGACGAGAGTAGGCCAAC
AAGCTTGTATCGTCGTCTGTTGTCCAGGGAAACTGGGTGCATCTTTCAAA
TATCGTCAAAAACCGTAAGAACATCATCATGGAGGATTTGGAGAACGCGC
TCGCTCAACAAGCTCCCTCAATACCTGACACCAACCCTGATCTTCACGAA
CTTCCGCCGCTGGTGATTGAAGGAATCCCAACCCCGGTGGACAAGATGAC
ACAGGCCCAACTTCGCGCCTTCATTCCCATCATGTTGAAATATTCTACTG
GGCGTGGGAAGCCAGGGTGGGGGCGTGACAACACTAAACCACCCTGGTGG
CCAGAAGAAGTTCCTTGGGCGAACGTGCGAAGTGATGTAAGAAACGAGAT
GGATAAACAAAAGATCTCCTGGACAAACGCACTAAGGAAAGTGGTACGGA
ATTGTTATCGTTATCACGGCCGCGAAGAACTTTTGGACGCGTTCGCTTCA
GCCGACAACCAAATGGAACAACACAACACTCAACAAACTCAAGTCTTCAC
GTCCCAATACCCTCATCTTGTTCATACAATCAACAACGCGGACGGAACTG
TCTCCATCATCCAAGTGGATGCAACAGGTGCTGTGACCACACTGTCTGAA
TCAGCGAGTCAATCGGAAGCAACACAGGCTGTGGCGACGCTGGCTGAGGT
AGCTGCTTCACAAGGTGAAGTGATATACGGTAGTCATTCGATGGACCACC
ATTCCACGTTAACGCACGACCACGGAGGTGTTGTGACGTCAATCAGTGAA
AGCGCTCTCCATGATGGTCAACTTCTGCTCGGCGATGCGGTATCAGCTGC
GGCTGCATTGGTAGGTGTCCAAGACCAAAACACAGCTGTTGTTTCCATTC
CGGTGCACGCTGCGGCTGCCATGATGCAAATTCAAGGAACAAATTTGATA
CCTGTTTCCATAGCGAATGGTGGCGGGGGCGTTCAATTCATCGCCACATC
TTCTCTATCTAATTTCCAACTTCAAGCCGCCAACGAACAACAAACTAACG
CCCAACAAACCGTCACACAAAACCGCCAGCCGCCCTCACTTTCTGCACAA
CCATCGGAAGATAATTTAGCGTCTATGGATGTTCCAATGACTGATCCCTC
GCCACCCGTTTCACCCTCTCCGCCCCTGGTACAAGAACAACATTCGGCCA
ACGAACTCGGAGTTCATCAACATTCAACCAATGAGATGACAGTACATCAA
AATTCGACCAACGAAATGGTAGTCCATCAAAATTCGACCAATGAAATGAC
AATACATCAACAGCAACCACCCAATGAGATTTCAGTTCCCATGGCTACAC
AGGCGGTTGAGGTAGCAACCATGCATGATCAACAAACGAACTCTGTGACA
GGCACTTGATGAAGTTTGTGGCACGATTCTACGTTTCTGTTTTCCTTCTA
TCTTTCGGGTTCCCCAGTCCAATCCAGTCCaatcctttttcaaaaaactg
acaGTTGGACAATTGAATCTTGTTTTGATCAAAGTCAAACTTTTCAACTC
TCCATTTCTTAGAAGTCGATTGTGCTTGACAAAGTGTATAGTTTTACTTT
AGTTCCAATACTTCTAAAGAAACATTTTGAGAGAATCTTGGCTCTGCGAT
GTTTTACTCTCTTATTTCCTTAGGTCCATTGTGCtagatatttatatttt
tatttgtccCTCATTTTAGaactattttttttccaaattttttctggTCC
TTAAATTTCTTATATCCTCAATTTTGTAAATAACCCTAAAATTCATATAA
CAAACTACTTTAACTAAATAGAGATTTAAAAATATGACCTGATAAACTGT
CGCAAGTATATCTTTCAGCTTTTAAAGGGATAACTAG
Run BLAST on NCBI

transcript from alignment at sc0000024:764417..776661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002968 ID=TCONS_00002968|Name=TCONS_00002968|organism=Clytia hemisphaerica|type=transcript|length=12245bp|location=Sequence derived from alignment at sc0000024:764417..776661+ (Clytia hemisphaerica)
GAAAATTCCGTTTCCGTTTGGGAGGAACCAGCGGGTGCGAGGAAACTGTT
TTTTCGAAAGAATTCAAGCGCCATCTTTATTCATTTTCTGGTACTCGTGG
TCACACCTCACCCTTCGCTATGATCTTTCGAAGTTAATATTTGATTAAGA
GCGTGTGTCCAGTATTCACGGAAAAGTTCTTTTGTTGACGATTTTTCACC
CGCACATGCTCAGCAAGGTTTGAACGTAGTGAGCAAGCTCAAAGAAATCA
ACGCATCCCAATTTCTACAAGTCTGCGCATCTGAACCTAACAACCAAATA
ACAATCACTTTCTCCATGTAAGTATTGTCATACCTTAGCTCATTGACTTT
GGAGAGGTCTGATACacttttttgcattttaaaTGCTAGTATCATATCAT
TTTGATTAGGTTCTTGACCCATCGAAGAAATCCAATATGGCGGCCATTTT
AACCAGGTAAGTTTTCTCTTTCAGATTCAGTGTCAATTGTAGATGACTTT
ACTGCGGGCAGGCGGGGAAAGCTTAATGGGCCatcccagaaaatttttgt
taccccccgtcggacgacgtgcattttttaatttttcatagcctcggaaa
taatttttcttttccagtggtggtcgggaaattccgatgaaaatccatgt
acttttgcaaaatgcatcggaaattccactcttttttgccttttttaatt
caattgccttggaaatttgtacattttcttctctcaccttggaaacttcg
aattttggtgaaaactttggACCTCTGAAATcttgtgtcgtccgcccccg
ccctcccccctgttacagacaaattctggaatggcccaatactgtctcac
ttttttatcattcttgGAAAAGGTTGTGAAAATGTTCTAATCCACCGTTA
GTATCGTAAgctggtctaatgtcaacatccccctcttctaatttcgacac
ccttcatTAGTTTAGGGGCAACGTCCATATTCAAAGTAGGGAGGTCGGGC
CTTACGCgtgcggcagtaacaaaacatagattttcgagaaaaaaatattN
TCTCAAGGAAGGAAACCTCTTTTAacataagtattttttccaaagtgtag
agaatttattcagctttcttttgcagaaaaaatcagcacatAATGNcatt
ttccttcaaaatttgaaaatgagtactcgcgggtgagttttttcaaactt
cttgttcgcggcacggcaaaattttttatccgggggttctaaaatccaaa
gGGCTAGCCACCCAAAACAGCTATCGACCTGGAATTTTTGCATCGTTCCC
CGCaatagtttagcttttgagacgtaccacgttcGTGGTACGTTTTTTTA
TCGAACGtgaatttttttagaaagaacaatgtttattctttccaaatgtg
aaaaaagtaagaatcaagctgtttccggtggcaagcgcaagggaaagatt
atggtgtaattacccccgtttcagctacatctatggaaaataaaactcgc
accAAACCTCTCGCgcggaatttttcataaaacactttcgcttttggtgc
cataatgaaggtacaaaatggctggtgatgcgtgcacgaaaatgcttgaa
aaattgaacttcaaaatgtaatatctttggaactttagagaattggaagg
taaatgacccctcatttttcttctgatggttatggctttccattaaactt
ggtttggtattctgcaagtaagtttgaaatttcctctgaccaccctattc
aaagtcgccacgcgtaacgggaaaagaccgttactTTCAAAACATACCTA
CCCACCTCCTTAACCAGCCTTAAAACGGTCTTCATAAATAAATTGACCAA
AATCTTACCGAAGCTTCCATTcccgccaaaatcaaaacaaacggcccgct
aTAAATGTCACCATTTTCGGAGGTTTAAAACAGCCAAACTCcatcacaat
ttttaaacagTCTTTATTTTTAAACTCCCGACAGCTCCCGAGGCAGAAAT
GTTATACTCTGAAGAAGCAACCCCTAAAATTGCtcagggaaaggattttg
gcTGGATAGCGTgctaaaagaaaaagtaaaggaGTGAGTGCTAGTACGGT
AAAGGgtcttagatttttttctttgaatttttaatGGAATTTCATTTTGG
TTATCAATGCCATGCAGCTAACTCTCAACATTCCGATATACCTACccact
aacggtcttttcccgttacacGTGCCGAttttgaatatggacgtcgcccA
TTAGAGATGAGAATAATGGGAAGGTccgaatcgctgattgaaactaattt
tctttgctaAGCGTTCagagagaaaaatatcttttgtctatcagtgattc
caaccttttcatcctattattcctatctctaaagaagggtgtcgaaatta
gaggagggatgctGACATTGAGACCATCTTAcggtataagattcccattt
ccgcaccaAGATTCTTCTTGTCACTTTCCTGAAACCTTTTTGCTAGATAT
TTTTCTCGGGATAACCGGCATAAGATTGaaaagggtttgtttctaaaggt
acgAAAAATCTTGTTTATATACTCACAAAACTGTGTGACTTTTGGAAGCT
TATCTTTCAACTATCCCcaagtcctggtctttttggacctacctccgggt
accgcATTGGAgctcctataaattaacctttgtccgttcgtccgtctgtt
tgttaccagcttttctcgagattggctcgttagttttttcggatttttgg
ctcaaagatgcaaaatgacaatacttaaaatgtgacggagcccgattttt
gaaagacatttttttctggccaaaaatgccggaaatatgccggaaaaacc
aatttttgacattttctcgaatgttcatccttagttttttctgatttttt
gcagtaagatgcgtattcgcaatgttcaaaacatgggcaagtttgatttt
ttgagaaaaatttttttccaaccaaaaatgacagaaattgccgtttttgc
agattttcattggattttttcgttttatgtctttgtttttttcaactaAT
AACGGCActatcatcattgacaataaaaaaaggattttctgtctAAGTCC
ACCATTTTAGCACAgtctgaggattgagccgagaacgctctcAGAACGCC
TGCAAGCTCCCGCATGGGTGAAAAACTATctctcaatcattttctcaagc
aaagagtGTGCGAAGCGATTcgagctttacgatagtgccacggatcatca
gtggatagcaTTCatttatcattatccctttattttcattcctagaacat
ttgcaaaaaaaaggaaaaatagaaaagttattttttactgctctattacT
ATTGCATAAAAATTGACTGCCCGGTTCCAGATAgtgaaaagggggggggg
gggagaaaaatttcaacatttctgggaagggaaaacacaaaaggGCTGAG
AAaaggatatttttattttcagagggGGGGGGAGATTTGTGGAAAAAggg
ttttttcattttcagggggGATTTGACAACTGGGCAGTCTAAAAATCATT
GGAGGAACTGACCCAGGAGAAAACTATGCTATGATTTTCCTCCTCCTTTT
TGCCAAGAAAGTAAATTGAATATCTCAACAGTGAAAATTCCATGCTCTTT
TATATCTTTTAACAGTGAACTATGAATCTAATGTAAAAGCTAAATGtcaa
gaaatattatttttggtgtaattaattctttaaaaaatttgaaaaaaact
tctgtCTTATGAggctcttcaaaatttttgacttttcaaccAGAACTTGA
TAGTTAAGGGAAACAGACACTGACTGAAGTActtggaattttgcctgatC
ATATCTGCTCATATACCTGAGGTTCCATGGCTTCCGAAATCTTTTAAGAA
TTCTAGCGAATTGATGGTTTATATCAGCCTTTTTGAAAGCTGATTTTGAA
TGAccaaaattagagaaaaattgaatttgttcCTATTAATTGAAAACTTG
TTTTTCAGTTTTAGATATTCCTCACAATGGATTTGGATCCCCACGTCCAT
CACACGACAGTCAAACTGGAAGAGATGCCTCATGCAGTTCCTGTCCATCA
AGTTACAAGGTCCAATTCTCTCTCCATGACCCACGTTGGATCAATGTCTG
ACGGCCTATCTGATGACCCCTCTTCGCCTGAATCAACAGCTTTTGATGAT
ACTGATCTTCTTACTGCACCAAGTATGTTTTACTAATTTCATCTTTATTG
TGGTCATTCATATAGTatttggacaaaaaaatttttccaaacatttGACA
GCCCCCTTCCTCTTTGTACacaaagaacaatagaaatttctttcaaaaaa
tatctgTACGCTATACGTCATTGAAAAAAAccctctcccccttcactgtg
tacTACATGGAAAGCCCCAATTCTGAAAGTGTTTTAAAACTTGTAATTTA
ATAGGTTTTAAAAAACATATTTGGATAGTTTCAATCAGTTGCAATAGTTA
CAATAGGTGCCAATACTGCAATCCCAACTTTTTTGTGGTTACAGTTGACT
ATTGCTGTTTAAATAAGGGCCCAATGTTTAAATTCAGCTCACTCTACACC
CAAGGGACCTAAATTCTTTGTCAAAGGTTTGAGACCTGAACTTCACTCTT
CACCATGCCTCAGTGTCACAACTAGTTAATGTTAGAATaaatcatttaat
tttttcaaactctCAGGTGTTGGTATGCACGATGATGTCACAGATGAAGT
CACCGCTCAATTAGCCGCTGCTGGACCCATCGGTAGGTCTGCTTTTAAGC
TTGgtcttttgaaatcaaaagaagcaaatCTGATCTGTGGATACATATGT
GATCAGCCAAAGCATTGAAAATAGTGCAGTGAATATCAGtaaaaatcaat
attattaTGATACTATCAGCAAATAGAATGATTTACTAGAAATTGCAGTA
AGgcttaaaaaaagttattggaaAAATTGCTAACTTCAAAacattagaac
tgaaaaaagtaattttctgGAAAACATGTTGCAATGATAATACTAAagtt
tctttgaaaagaaatcAAATAGAATGAGAAGAAAATaaccaattttacaa
ttttactcctagaaagttgtttttaaagtGCCATTAACGTTTAAAGCTAT
TCCAGGAAAACTTTATATTAGTTTATGTCCAATCGAATCGGCTCTATTTA
CGTGTCATCAAGTGCACCAAATGGCAGCATAGCCCAAGGGTCTGGTTCTT
TTTTATTATACTTATACTGCCTTATACTTATATTTGCAAGAGTGCCAGAT
AACACCTACACGCAGCTTCTCAGAACATTTTGAAGTGACGCAGTTTATCA
TTactaaaaatggacaaaaagaacgacaaattcaTTGGGAGTCATGCAGT
TGGTACCCGACATCATGACGACTAactgcaaaattgaaaatttgagattA
CACCCACCACCCCTTAGCAGTTAGTACCCAAATGTACTACGTGCCTTTGA
CTATTGACAGGTTGACACCACCCCTATTTGCACTTGGTACAGCTTGGTAC
CTTGCAGTACTAAGTGCATTTGACTATTGAcagtttggcaccacccccta
TTCTATAACATAAACACAAAGCCCAACATATACGATACAAAGCTACAAAG
CGCCAACATTTAAAGTAAAGTCTGCCCAACATAATAGGTCTAAAGcccca
gaaataaaaaatatgaattaAGCATTGTTTGACCAACGACTGGGAGAAAA
GCTtgagaagacattgcagtgctGCGCAActtcataaaaacaaaaagctg
GCAATTTAGCTATACACAATTTCAAAACATGCAATCTTTGAAATGCTGAT
TTTGTAAATCTGGAGAGTAAAACCAAGAAAGCTCCTACATTTTTTTGTAT
CTACCGTGAAAATTAGTTACGCAAAAATAGGTAATTTTTActataaattc
ttgaaaactCCTAGGAAAGTGAAAGAAGTTGGTGTCAACCGCGAAGATTA
GTTTTGCAAAAAACGCCAACTTCATACCTTCACACactgtgaaaattagt
tccctagGTATTAATATCGATAGCCTTTTTAACAATTAGTACACTGAAAG
TACCATttgattgacttgaaatttataGCACGCTACCCCTAATAGCACTT
ACTACCCACAAGGTACTAACTGCAAAAATCAAATAtgacccaccacggta
ctaaccgtcATGATGTCTGGTaccaactgcatgacccccccttccccttg
acaaatttcatattttaggTTAAGAGTTTTGCCAGTAACGTCAATCTTTT
AATCATAAAAACTTTCCACAAGCCTTATTCGCGGGCCCTTCTCAAAATCG
TATTTGTTTTCGAACCATTCTCGTCCCACGAAAGATGCTATGGATCCTAA
GGGTTGGCTCCTACTATAATAAAACGTTCATGAAATTTGGCCTTCATCAT
TAAAATTCACATATTTCACTCCTTCCAGGAATGGCTGCTGCAGCCGCCAT
CATCACAGGCAAGAGACGAAAGAagagctaccattttgaaacaAACCCCT
CCATCAGAAAACGCCAAGCAACTCGACTTTTACGGAAATTGAAACAACTC
TTAACGGAATACACGACGAGAGTAGGCCAACAAGCTTGTATCGTCGTCTG
TTGTCCAGGTACGTGTTTTTTAAGAATCATTTCGTTATCTCTAAATCGCG
TCATTTTGAAAAGCATTTTGTGAGGGAATATTTTGCAGGCCTGAGTTCAA
AACCTACTTTTTAAATTAATCAACATCATATTTTGAGTAATAGAAGGGAA
TGATATTGAAATTATAACGACAAAGACTGGAACTTTTAGTTTTCCTTCTC
AGAAAAGCGACTATCTAAATGTAAAAACCAGATTATTCCTCCTGATTCTG
ACTTTTTCAAACTCTATTCTCATCCAGGGAAACTGGGTGCATCTTTCAAA
TGTTTTGGAGCAGCACCACTGGAAAACATCGTCAAAAACCGTAAGAACAT
CATCATGGAGGATTTGGAGAATGCGCTCGNCTGGGTGCATCTTTCAAATG
TTTTGGAGCAGCACCACTGGAAAACATCGTCAAAAACCGTAAGAACATCA
TCATGGAGGATTTGGAGAACGCGCTCGCTCAACAAGCTCCCTCAATACCT
GACACCAACCCTGATCTTCACGAACTTCCGCCGCTGGTAAGACTGTTGTC
CTCTCTCACGTGTTGTCTTATTTGTCAATGTATAAGAGagatttccagaa
aaaacttagtataatgatgaaaagaaaaatgatgatACTGTAAAGCAATG
CTGTTAGTCATTTCTCTACTAAGCTCTTAATAGCTACAGTCAACTCactg
taattcgaactagagTAGTTGCTATACTAAAAAAAATCCctttaaaaaat
gatgtttcCACTTTTCAACACAGGTGATTGAAGGAATCCCAACCCCGGTG
GACAAGATGACACAGGCCCAACTTCGCGCCTTCATTCCCATCATGTTGAA
ATATTCTACTGGGCGTGGGAAGCCAGGGTGGGGGCGTGACAACACTAAAC
CACCCTGGTGGCCAGAAGAAGTTCCTTGGGCGAACGTGCGAAGTGATGTA
AGAAACGAGATGGATAAACAAAAGATCTCCTGGACAAACGCACTAAGGTT
TGGAATTCAAAACTATCGTATTCTGAAGTAGTCCTATATTTTCGGATCCA
AGTCATCCGAACATTTTGGTTTCGAAAGGGCAAAAACATAATAAGAGTAT
AAATTCCAGTAAGTgcaaattaaaaacttttatagATCTAAAGCAGAATT
TTTGCATTCTTTTATGTTTATGTCCTTGATATGTTTTTATTTACTGTATG
TATGCGGTCAAGAATTTTTATCAGCTCTGATCAGCTACTCTAGTAGAAAA
CCAACTGTGCATTACTCTTCaactttattttttgtaaaaagtactCTGCA
GAAACAAACAATGTTAAAAACATATTCCGTTAGAGGCTTCGCCATCTcca
aattctgcataattccaCAAAACTTCAAGAATATTttgtaggcttctgct
catcctctagcgaaaaaagtttcttatagaggctgcTTAATACTCGGTAG
ATCTTTTTTCCCAGAATATGCCGCTTTTCGCCGAATTTCGGCGAACAACC
tattttagctggcgagtgctTTTGATGATTAATTTGCAAAGAGTACCTTT
GCAAGAGTACCTGTTACGAAGTAGCGTAGCTTTCGCTgttcaaattcaag
atggccgTCGAAGCGGGAAGTGGTTTTCGTCAAGCTAGAGTACTCGTTTT
TGATTTGGGGTAGTTTGTTTAAGGCGAAAGAAGTTTTGTTAATACAATTA
CAAGTTTTAGAGTATGTAATATATGTACCAAGAAAAAAAATATCGTCTAG
AACATTTGTTATCAAGCTTATAATGtggaattttgatttgttttggtggA
CATTTTGTTCGTTTTGAACGAATGTAGAAAAGATACAGTAACAGGTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTGTTGTAAGTATCTAATAGTAATATTATTTTGTGGCTTTATCTC
TTTCCAGAGAGCCTTCTTCCCTTTTACTTTGTGTCTACTTAAAGTTGTTT
GAAAAAGTGTAGCAGCAGATTCTAttattctttgttttgttaAACTTTGG
CAGAGACGGGAAGAATGTtggaatcagttttattgatgaAACCCAATATG
TCTCACTTAACTAACCTGAAGAGGTTCTTTGGAAACAAATAGTTATtgtg
aaattttctttcaaagtttttgagaaattcaaattcgTTGACTCAAAGCt
ctaatatcaaaacattccaaaataaaaaaacattcgaaaatagaaaaaaa
tcattcgaaaataaaagaaacattcgaaaaggcGTGCCTATGGCAAAATG
GAATCCCGTCTAACACTGGAATGCCttcactttgatttcttttgtttatc
ttttaacTCGCATTCGAGTTCCCATAAAACTTAGCGACTCGCCAAATAGC
ACGAGTCGGCCACCATGAGAGCCACCGTAGCGGGAAACCAATCCATACAC
TATTAAACAGACCtataggaagtataggtctgcgaatcagactaaaATAT
TTGCTGATTTGCTTTGTAAAACTCATTTCCTTCTCTTGATCTTGCCTTCA
CCACTAAAACTTTACTTTAATTAAATTGATTTACGGTAAATGaaagtaaa
ttcaaaataaatgatTGTACGCAAGTGCATCCTTTTAATGTTTTAAcatc
ttgattttttgaaaaaatacgtATTTAGNTCACCACTAAAACTTTACTTT
AATTAAATTGATTTACGGTAAATGaaagtaaattcaaaataaatgatTGT
ACGCAAGTGCATCCTTTTAATGTTTTAACatcttgatattttgaaaaaat
acgtATTTAGAttcaaagtaatttattttCAGGAAAGTGGTACGGAATTG
TTATCGTTATCACGGCCGCGAAGAACTTTTGGACGCGTTCGCTTCAGCCG
ACAACCAAATGGAACAACACAACACTCAACAAACTCAAGTCTTCACGTCC
CAATACCCTCATCTTGTTCATACAATCAACAACGCGGACGGAACTGTCTC
CATCATCCAAGTGGATGCAACAGGTGCTGTGACCACACTGTCTGAATCAG
CGAGTCAATCGGAAGCAACACAGGCTGTGGCGACGCTGGCTGAGGTAGCT
GCTTCACAAGGTatgaatttttatcatttttagggTCCTGGACTGTCCTG
GAGCTGGTTAGTCTGTACACAGATCCAACATCTACGGCTAAATTCAAAAT
CCATTGCTGTAGATGATCTGTTGTCACtgtcttttctgatttgagatttt
tcaaaccgaccgctgcgatggagagGAGAGACGACGCGAAAAAATTgttt
ctatttataaatcatacttcatcgcaaaGATTTTCGTACGGGAATTTTGT
TAACAAACAGACAGTGCCCACATAGTGTACTACGAAGCCATAAATGTAAG
ATACACTTTGGTAAGAGAAGGAGTTGGTCCACTACCAGTATCTTCGATTT
ATATATTAATACTCATGATGGGAGACCACATTCTTTGTTATGCTTCATCG
ATGAATTTATAAGAAATCTAGACATAATATACAGTTAAAGCTGTAAAGTA
TATCTTTCTCTAAATGTTGTATATTACCTTTCTCAACACAGGTGAAGTGA
TATACGGTAGTCATTCGATGGACCACCATTCCACGTTAACGCACGACCAC
GGAGGTGTTGTGACGTCAATCAGTGAAAGCGCTCTCCATGATGGTCAACT
TCTGCTCGGCGATGCGGTGAGTTGAGTCTTAATCTCTCGTAATCACATGT
TTCTcgttgtttttctttatttttaattttccatgAATGGTACATTTCAA
GTGCGATTGGTTTTTTATTTCCTAAATTTTGACTATATTGCGATATGTGG
TGTGACTCTAAACTCGAATTTTCACGAAGAATTGGACATTTCGTTTTTGA
ATCTGCTCATCTTGCATTACCTGTTTTTGCTACCTTTCGGCAAGAACTTT
CAAGCATTATTCTTGCCCTCTTCTTCCTCAGGTATCAGCTGCGGCTGCAT
TGGTAGGTGTCCAAGACCAAAACACAGCTGTTGTTTCCATTCCGGTGCAC
GCTGCGGCTGCCATGATGCAAATTCAAGGTTTGTTTGCTCATTGATCACA
TTTTTTCGATCCACTGCAACTATTTCATGACATCTTGGACTTTTCCAGCA
CTTCTATTATACTCTTatgttccaaataaacgccccccccccNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCCCCCCctccgtttatttggaacctaagagcaTGTT
TGTGTTAATTTTCTTTGGCTATGTAGACTTCAGTATACTTTCGcttattc
gaatttttttccAGCCCCTGTCAAGGAGAAACAACCCTCTTAATAcattt
tctataattcaaatctctTTGTAATTTGAACAAATAAGATTGCCTGTTCG
AGATCGAATGAGCAACAGTCAAATGCTGACACTTATCCTTATGCTCATAT
TTCTGGACTTGTAACTAACTAAACATCTCTCTTTTAATTTCCAGGAACAA
ATTTGATACCTGTTTCCATAGCGAATGGTGGCGGGGGCGTTCAATTCATC
GCCACATCTTCTCTATCTAATTTCCAACTTCAAGCCGCCAACGAACAACA
AACTAACGCCCAACAAACCGTCACACAAAACCGCCAGCCGCCCTCACTTT
CTGCACAACCATCGGAAGATAATTTAGCGTCTATGGATGTTCCAATGACT
GATCCCTCGCCACCCGTTTCACCCTCTCCGCCCCTGGTACAAGAACAACA
TTCGGCCAACGAACTCGGAGTTCATCAACATTCAACCAATGAGATGACAG
TACATCAAAATTCGACCAACGAAATGGTAGTCCATCAAAATTCGACCAAT
GAAATGACAATACATCAACAGCAACCACCCAATGAGATTTCAGTTCCCAT
GGCTACACAGGCGGTTGAGGTAGCAACCATGCATGATCAACAAACGAACT
CTGTGACAGGCACTTGATGAAGTTTGTGGCACGATTCTACGTTTCTGTTT
TCCTTCTATCTTTCGGGTTCCCCAGTCCAATCCAGTCCaatcctttttca
aaaaactgacaGTTGGACAATTGAATCTTGTTTTGATCAAAGTCAAACTT
TTCAACTCTCCATTTCTTAGAAGTCGATTGTGCTTGACAAAGTGTATAGT
TTTACTTTAGTTCCAATACTTCTAAAGAAACATTTTGAGAGAATCTTGGC
TCTGCGATGTTTTACTCTCTTATTTCCTTAGGTCCATTGTGCtagatatt
tatatttttatttgtccCTCATTTTAGaactattttttttccaaattttt
tctggTCCTTAAATTTCTTATATCCTCAATTTTGTAAATAACCCTAAAAT
TCATATAACAAACTACTTTAACTAAATAGAGATTTAAAAATATGACCTGA
TAAACTGTCGCAAGTATATCTTTCAGCTTTTAAAGGGATAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001631XLOC_001631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002968-exon-sc0000024-1491911889:764417..764733TCONS_00002968-exon-sc0000024-1491911889:764417..764733Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:764417..764733TCONS_00002968-exon-sc0000024-1510915933:764417..764733Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:764417..764733TCONS_00002968-exon-sc0000024-1575043694:764417..764733Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:768425..768638TCONS_00002968-exon-sc0000024-1491911889:768425..768638Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:768425..768638TCONS_00002968-exon-sc0000024-1510915933:768425..768638Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:768425..768638TCONS_00002968-exon-sc0000024-1575043694:768425..768638Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:769133..769198TCONS_00002968-exon-sc0000024-1491911889:769133..769198Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:769133..769198TCONS_00002968-exon-sc0000024-1510915933:769133..769198Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:769133..769198TCONS_00002968-exon-sc0000024-1575043694:769133..769198Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:770895..771074TCONS_00002968-exon-sc0000024-1491911889:770895..771074Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:770895..771074TCONS_00002968-exon-sc0000024-1510915933:770895..771074Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:770895..771074TCONS_00002968-exon-sc0000024-1575043694:770895..771074Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:771344..771367TCONS_00002968-exon-sc0000024-1491911889:771344..771367Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:771344..771367TCONS_00002968-exon-sc0000024-1510915933:771344..771367Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:771344..771367TCONS_00002968-exon-sc0000024-1575043694:771344..771367Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:771492..771602TCONS_00002968-exon-sc0000024-1491911889:771492..771602Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:771492..771602TCONS_00002968-exon-sc0000024-1510915933:771492..771602Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:771492..771602TCONS_00002968-exon-sc0000024-1575043694:771492..771602Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:771840..772063TCONS_00002968-exon-sc0000024-1491911889:771840..772063Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:771840..772063TCONS_00002968-exon-sc0000024-1510915933:771840..772063Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:771840..772063TCONS_00002968-exon-sc0000024-1575043694:771840..772063Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:773999..774276TCONS_00002968-exon-sc0000024-1491911889:773999..774276Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:773999..774276TCONS_00002968-exon-sc0000024-1510915933:773999..774276Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:773999..774276TCONS_00002968-exon-sc0000024-1575043694:773999..774276Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:774758..774882TCONS_00002968-exon-sc0000024-1491911889:774758..774882Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:774758..774882TCONS_00002968-exon-sc0000024-1510915933:774758..774882Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:774758..774882TCONS_00002968-exon-sc0000024-1575043694:774758..774882Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:775148..775244TCONS_00002968-exon-sc0000024-1491911889:775148..775244Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:775148..775244TCONS_00002968-exon-sc0000024-1510915933:775148..775244Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:775148..775244TCONS_00002968-exon-sc0000024-1575043694:775148..775244Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1491911889:775711..776661TCONS_00002968-exon-sc0000024-1491911889:775711..776661Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1510915933:775711..776661TCONS_00002968-exon-sc0000024-1510915933:775711..776661Clytia hemisphaericaexon
TCONS_00002968-exon-sc0000024-1575043694:775711..776661TCONS_00002968-exon-sc0000024-1575043694:775711..776661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:764417..776661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	3.27991e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9.27949e-09	0	0	0	0
Blast
[Close]
BLAST of TCONS_00002968 vs. Swiss-Prot (Human)
Match: NRF1 (Nuclear respiratory factor 1 OS=Homo sapiens GN=NRF1 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 7.057e-70
Identity = 147/339 (43.36%), Postives = 190/339 (56.05%), Query Frame = 1 
Query:  793 LSNIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPPLVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEEVPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADNQMEQHNTQQ-TQVFTSQYPHLVHTINNADGTVSIIQVDATGAVXXXXXXXXXXXXXXXXXXLAEVAASQGEV-----IYGSHSMDHHSTLTHD--------------------HGGVVT-------------SISESALH-DGQLLL-GDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVSIANGGGGVQ 1686
            L N+V+  K++I+EDLE+ALA+ AP+  + N    ELPPL I+GIP  VDKMTQAQLRAFIP MLKYSTGRGKPGWG+++ KP WWPE++PWANVRSDVR E  KQ++SWT ALR +V+NCY+ HGRE+LL AF     Q +   T     +  SQ   +V T +N DGTVS+IQV  TGA       AS+   T  VA +   A + GEV           M   +T   +                     G  VT             +++E+ L   GQ++L G+  +A  AL GVQD N  +V IPV    +M Q      +  S+A G G VQ
Sbjct:  152 LENVVRKYKSMILEDLESALAEHAPAPQEVN---SELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAFEDQQTQTQATATHSIAHLVPSQT--VVQTFSNPDGTVSLIQV-GTGATVATLADASELPTTVTVAQVNYSAVADGEVEQNWATLQGGEMTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDAN-GLVQIPV----SMYQT-----VVTSLAQGNGPVQ 474

HSP 2 Score: 65.0846 bits (157), Expect = 7.057e-70
Identity = 68/117 (58.12%), Postives = 83/117 (70.94%), Query Frame = 3 
Query:  450 SMSDGLSDDPSSPESTAFDDTDLLTAPSVGMHDDVTDEVTXXXXXXXXXXXXXXXXXXXXKRRKKSYHFETNPSIXXXXXXXXXXXXXXXXXEYTTRVGQQACIVVCCPGKLGASFK 800
            SM     D PSSPE T++DD+D+L + +        DEVTA LAAAGP+GMAAAAA+ TGK+RK+ + FE+NPSIRKRQ TRLLRKL+  L EYTTRVGQQA ++   P K    FK
Sbjct:   36 SMLSADEDSPSSPEDTSYDDSDILNSTAA-------DEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFK 145
The following BLAST results are available for this feature:
BLAST of TCONS_00002968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NRF17.057e-7043.36Nuclear respiratory factor 1 OS=Homo sapiens GN=NR... [more]
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