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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002965 ID=TCONS_00002965|Name=TCONS_00002965|organism=Clytia hemisphaerica|type=transcript|length=1284bpRun BLAST on NCBI protein sequence of TCONS_00002965-protein >TCONS_00002965-protein ID=TCONS_00002965-protein|Name=TCONS_00002965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp ISVKFRNDHSIMKLAVAAEQHQKMHMAAASSPSSQKRTSVLIKQEDGSSRRun BLAST on NCBI transcript from alignment at sc0000024:726716..747118+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002965 ID=TCONS_00002965|Name=TCONS_00002965|organism=Clytia hemisphaerica|type=transcript|length=20403bp|location=Sequence derived from alignment at sc0000024:726716..747118+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:726716..747118+ >TCONS_00002965 ID=TCONS_00002965|Name=TCONS_00002965|organism=Clytia hemisphaerica|type=CDS|length=17280bp|location=Sequence derived from alignment at sc0000024:726716..747118+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002965 vs. Swiss-Prot (Human)
Match: TDIF1 (Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Homo sapiens GN=DNTTIP1 PE=1 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 8.609e-40 Identity = 99/280 (35.36%), Postives = 146/280 (52.14%), Query Frame = 2
Query: 269 NPFNMTAKNFPKRRHLLKNTSGFLNRTRGNNTSPNKALEQVRAALQPSLNAEIERVLHSYQEMFQMAAYNVGDNLKEQITA-QHIGHILRRSLEEAKSLFKIEGETHP--TGKSPDKKEKMWTSARSVIIXSPDKKEKMWTSARSVIIXXXXXXXXXXXXXAMND-NFDYPKIEEKNLTEETQFILGVKANKILGFASARGRLYIRHPQLFKYLGDQEDKQWLQDNGHMTMSGGK-AFLMMADDIRLLAVNHPDYKDNLGIKGEDVKGFTVPESILKKMR 1093
NP+N+ K H G ++ + T P +++ +RA LQPS+N EI+ V + Y + FQ AA NV DN+ E++ A Q I R LE+AK LF + P T + P K SP K++ ++ + A K+ + PK + L E T F+LG +ANK LG RGR+YI+HP LFKY D +DK WL + HM +GGK A+L++ +DIR LA + DY+ L +K E++K F +P +++KMR
Sbjct: 36 NPWNIMIK------HRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASD-DYRGCLDLKLEELKSFVLPSWMVEKMR 308 The following BLAST results are available for this feature:
BLAST of TCONS_00002965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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