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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002963 ID=TCONS_00002963|Name=TCONS_00002963|organism=Clytia hemisphaerica|type=transcript|length=467bp
ATACTTTTCGTCTCCAATTGAATAGTCGTGAAAGTTATCACTTTTTCTTG
AGTAGTAGTGTAATTTGTGTGCAAACGTAGTTAGTGCAAATGGTGATGGG
gaattgaatttcggtcaaacgaaacagaaaaatgtcaatttttagattCG
CCGAGAAATGCACTGTGGATGCGGATTGCGAGGCGAACGAATGTTGTACA
CCCACATTGAGTATGGGTGACCGATGTCGTGGTCATATGACCGAAGGAAC
AATTTGCTCATCTTTCACTGAAGAATTGATCAAGCGGCTTCACCGAAGAT
GTCCTTGTGAGGCTGGCACCTCTTGTAAACGAACTGGTAGCATTCTGGGA
ATCTATAAGATCAACAGATGTGTCAAAGACGAAGCTTAaatcatgatttt
caaatttatatataaaaaaattattatcatGGGAAATAACAAAGTTATCG
AATTTATTTCCAGTTCC Run BLAST on NCBI transcript from alignment at sc0000024:703200..706263+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002963 ID=TCONS_00002963|Name=TCONS_00002963|organism=Clytia hemisphaerica|type=transcript|length=3064bp|location=Sequence derived from alignment at sc0000024:703200..706263+ (Clytia hemisphaerica)
ATACTTTTCGTCTCCAATTGAATAGTCGTGAAAGTTATCACTTTTTCTTG
AGTAGTAGTGTAATTTGTGTGCAAACGTAGTTAGTGCAAATGGTGATGGG
gaattgaatttcggtcaaacgaaacagaaaaatgtcaatttttagattCG
CCGAGGTATGCTATTAtaattttggagaaaattaaTACGTGTATGTGTTT
GTACAGTTGAGCAAATCTATCTAGATAGAATTTTGATTTGCAAAAATATC
AtgaactacatgttttttataagcattataGATTAAACTtttaagcatat
ctaggcttaGATatggtaaaaaattaaaaagcatATCCTAAGCATTATCC
TCAGCCTAAATTCTCCACTTTTGACTGTTCTTAGAATTTACGAATTTCTG
AATTTCTCTAAGATTTTGTTCTAATACCTATATGCATTCTTCAAGCATTT
CTCTCGATTTAAAGCATCTCCGAACCAACTTTTGGATTTTTAAATGCTCA
TAAAAAACTTGTAGCGTACATGAGAGGCTGACGGAACTCGCTAATAATGA
TGAGAGAATAGGAGGAGAGCTTATGCTCTTGTTGTACACCGAGAACACTG
CAATCTTAGCCTAATATCAcctaaagaatttctttttgaataaccctttc
agtcccacgcGACCGCACTGCGGTTCCTTTGGACCCGTCGTTTTTTCCCA
GAGGACTGCAGAGCGGTccctgatttattttttaaattgtgatgttttgg
cgggaaataaagagatgtctttaaacagctttcaaagaaGATAGGATAGC
GCGTCGTGTGCAAAAAACCGcataaaaaaagcttgttcgagtaaaaagtt
ttgtttacaaaagtatttacaaaaatttttgcaagcaaagtctgtaaggc
cgaaaatgggattttttacaacttctatcaatcattatgatttttctatg
agagctaatcaaacaattcttttttcagttagtagaTACTGTTGTGCTAA
ACATTTATCATAAGAATTATTGggttttaatcattttttcataaaaaaaa
ttaccattgaatggcaaaaaattgctgttttaaaatttttttgtgccttt
ctctggtcacgtgacacgctgatgacgtcattttgcaaatttttttcttt
caaaattatcctcatactataagtgaaaaaaggtgaaaacttgagaggac
taggtttagtgattccagagatattgaagAATGAGTGAATGCATTCAAAG
ACTCGTTTTACGGCTCTGGGAAAGTAGCTGTGAAAactctgggactgaaa
gggaTAAGGCTGAATGCACATGTGCCCGGAATAATCCTACAATTGGTTAT
ACTCAAAACAAATCATTTTGTGATGTAGAATCATCTGTGCAAATTGTAAA
TAGATTATGTGTAACTTGAAAAAGTAAACTTTTGGTTGATTTCTATTTGA
AAGACATTGACATTCACAAAAACTCCCACATAAAAGTTACTTTTCTACTG
GAAGAAGCTGGTATTGTAAAAAAACACTTCATAAAATATCAACATCAGTA
TACAGAAGAAGAAAATGCGTTTTTATCTTCTCACTTGTCTTGTTGTCATC
ACATTAGCACGTGGCAGTAATGGGCTGATCGACTCTTTATTAGGAAAGGT
AAAAAATGCCAACGATAACCTGTTTTGAAATATCTGTTGGTTACGTATAT
TCGACTCTAGATATCTcgatcaaattctttttttatttgagctCTTCAGT
CAGGTATATTCTCCCCTTTCTaatttttcaccccctggacataGTAGCAG
TTTTAGCAGgattttcaatacccctggataATATACCTTCCAGCCCATTC
TTGGAGCTTTCAGCGCTTGGGTTCGTGAATAGTTGACGAAAAAACACTTT
TCTTCTTACCTTTTAGAAATGCACTGTGGATGCGGATTGCGAGGCGAACG
AATGTTGTACACCCACATTGAGTATGGGTGACCGATGTCGTGGTCATATG
ACCGAAGGAACAATTTGCTCATCTTTCACTGAAGTAAGTTTATACATTGA
ATCCAAAGCAATTTTATATATCAAACTCAGTTCCACTGTTTCACCCAAAA
TTGTAGTTTGCCCAACTAAGCATCAACTTACTCACTCATCTAGGATGTTT
TCGTAGCTTTTACCGGTATTATCAgcattagacgatcctatcgtctacgc
ACGAGGTCACTAAAAATGGAATAATTTAGGAAGGGGatgaattttgtgaa
aaaggagTTTGGTCCGGTACGGAGTAAGCAGTGACGGCTCAGTTTGTTCC
ATATTCTACAACCGCTATTTTTCCCTATACTGTCCGAACGGCTCTAAACT
CTTTGCATATATTTTCTCCGCTTTCACTATTcctctaacggacgatagca
cTGTCTTAACCATTGCCAGCCTAAAAAAAGTATATAACTACACCCCTGGC
TCACAGCCccgatggaacttttttcttcgtTTGGGTAAagattcctattg
aaatcttaATAGGGATAGAAGTTTTATTGCTCCAAAgttaaaaaacccag
tgggaatggtttggagtgcaatctttaaacatggaatttcaaaaggatga
aatcaaagtcaatttcctagtGGGGCTGAAACTCAAGGGTATTTTACCAC
Cgtggacgaaatttttgcctaattttccagtggggctggggtcccagtgg
gtctgtgacacaggggtgtatgatTGTGAGGTACCACTATATGTCTCTTG
ATTGAGGTCAATCTAACAATAATCTAACTAGACTAGAGAAGGGTACCTAG
ATTTACGGTGAAAATCCAACCTCTCAAATGACAGACAAATCaattatttt
gatcatttaTTTTGCATAGGAATTGATCAAGCGGCTTCACCGAAGATGTC
CTTGTGAGGCTGGCACCTCTTGTAAACGAACTGGTAGCATTCTGGGAATC
TATAAGATCAACAGATGTGTCAAAGACGAAGCTTAaatcatgattttcaa
atttatatataaaaaaattattatcatGGGAAATAACAAAGTTATCGAAT
TTATTTCCAGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002963-exon-sc0000024-1491911889:703200..703354 | TCONS_00002963-exon-sc0000024-1491911889:703200..703354 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1510915933:703200..703354 | TCONS_00002963-exon-sc0000024-1510915933:703200..703354 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1575043694:703200..703354 | TCONS_00002963-exon-sc0000024-1575043694:703200..703354 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1491911889:705116..705232 | TCONS_00002963-exon-sc0000024-1491911889:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1510915933:705116..705232 | TCONS_00002963-exon-sc0000024-1510915933:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1575043694:705116..705232 | TCONS_00002963-exon-sc0000024-1575043694:705116..705232 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1491911889:706069..706263 | TCONS_00002963-exon-sc0000024-1491911889:706069..706263 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1510915933:706069..706263 | TCONS_00002963-exon-sc0000024-1510915933:706069..706263 | Clytia hemisphaerica | exon |
| TCONS_00002963-exon-sc0000024-1575043694:706069..706263 | TCONS_00002963-exon-sc0000024-1575043694:706069..706263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:703200..706263 + |
Blast
The following BLAST results are available for this feature:
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