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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002957 ID=TCONS_00002957|Name=TCONS_00002957|organism=Clytia hemisphaerica|type=transcript|length=1651bp
AAACGAGAGCTGTTATCATTGATTGGCTCACTTTCCTTTGCTTGTCGTGT
TATTAAGCCCGGAAGAATTTTTCTCAGACGTCTTATTGATCTTGCTCACT
CTGTTCGCTCTCTGCATCATCACATAGACATCTCGGTCTCAGTTAGGGAG
GATCTTGCCATGTGGTCTGTGTTTCTACAGTCTTGGAAcggatgttcttt
tttccagCAGCCAACTACATCTTCTTTTGCCCTCAATTTATTCACTGATG
CTTCTAAGCTGGGCCTTGGAGCCTTCTTCCACAATCAATGGATTTCTGAA
CCATGGCCAGACGACACGGTAGGTATCAACATCGCTCTCCTCGAGTTGTT
TTCTGTCTTCACAGCCATCAGCACATGGTCAAACCAGCTTCAGCACAGGT
CCATCTGTGTCTTCACGGACAACGAGGCTATTGTTACAATATGGGCATCA
GGTTCCTCTAAGGATGCGGTTATTTCGGCACTTATGCGTTCAATGTTCTT
TCTCTGCACTCGTCACAATATTTCCATCTCATTTAAGCATGTTCCAGGTG
TTGATAATGTCTATGCAGATCTTCTTTCTCGGTTGCAGGTCGATCATTTC
TTGTCAATTTGCCCTTCCGCACATCCGCTTCCATCACCAATCCCACCGGC
AGTCTGGCAGTGTTGGAAAGATCTTTGGTCAGCTTCTTAAGACAGTCTGT
CGCCCAATCCACATCAGCCACTTATATGACAGGTGTTCGCTCCTACATCA
ACTTTTGTGGTTCTCTTAGCATCCTTGCTTTTCCAGTACGTGAATCTTCA
TTGTGTTACTTTGTCACAGCCAAAGCCAACCGAGGCCTGGCGCACGGATC
AATCAAGGTTTACGTCTGTGGAGTACTTCACCAAAATACGTTGCTTGGTT
TTAGTTCATCAATGTCTTCCTACCCTCTTCTGTTTCACACACTACGTGGT
ATCCGCCGTGCCCAAGGTAACTCTCGTCGCAGGGCACCAAAGCTTCCAAT
AACAGTTGAACACATGTTTCGTATCGCCAATCACATCCGGCAGTCAAAAA
TGCCTACCAGAGACAAATTTATGTACATGGCAGCagttcttacagcattc
tttgGACTTCTTCGGGTCTCTGAGTACAACTCTCCATCTACAACTCACTA
CGACAGCTCACTACATCTAACTAGATCAGACATCTCATTCAACAGACAGG
TCAGTATCATGTTCCTGCGCATCAAGGGTAGCAAAACAGATCCTTTTAGA
GTTGGACACACCTTGTAGAGTCCCTGCGCTCCTTGACCCAGTCACTGCTA
TGCTCTCTTACCTGCGTTACCTACCCAATGACCCACTCCCTCTCTTTCGA
ACTGTCCAAGGACAATTCCTTACACGACGACATATTAGCAATCTACTTTC
ACAGGCGCTCCCGGGAGTCAACCACATTAGCACCCACAGCTTTAGAATAG
GTGGTGCTTCTGCTGCTTTGTCTGCTGGCGCTTCTGATGCTCTTATCAAA
ATACTCGGTCGATGGTCTAGTGACTGCTACATCCGCTACTTACGAGTCTC
TGACAACCTTGTTGCTGACTTCCAAAAACTTATGGCAAAGGTATCCAGTA
CTACGTCCGTGTGGGACCCTGACATGATCTAAGCTAGTTTTTCTTTTAGN
N Run BLAST on NCBI protein sequence of TCONS_00002957-protein >TCONS_00002957-protein ID=TCONS_00002957-protein|Name=TCONS_00002957-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
KRELLSLIGSLSFACRVIKPGRIFLRRLIDLAHSVRSLHHHIDISVSVRE
DLAMWSVFLQSWNGCSFFQQPTTSSFALNLFTDASKLGLGAFFHNQWISE
PWPDDTVGINIALLELFSVFTAISTWSNQLQHRSICVFTDNEAIVTIWAS
GSSKDAVISALMRSMFFLCTRHNISISFKHVPGVDNVYADLLSRLQVDHF
LSICPSAHPLPSPIPPAVWQCWKDLWSAS Run BLAST on NCBI transcript from alignment at sc0000024:616780..618430+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002957 ID=TCONS_00002957|Name=TCONS_00002957|organism=Clytia hemisphaerica|type=transcript|length=1651bp|location=Sequence derived from alignment at sc0000024:616780..618430+ (Clytia hemisphaerica)
AAACGAGAGCTGTTATCATTGATTGGCTCACTTTCCTTTGCTTGTCGTGT
TATTAAGCCCGGAAGAATTTTTCTCAGACGTCTTATTGATCTTGCTCACT
CTGTTCGCTCTCTGCATCATCACATAGACATCTCGGTCTCAGTTAGGGAG
GATCTTGCCATGTGGTCTGTGTTTCTACAGTCTTGGAAcggatgttcttt
tttccagCAGCCAACTACATCTTCTTTTGCCCTCAATTTATTCACTGATG
CTTCTAAGCTGGGCCTTGGAGCCTTCTTCCACAATCAATGGATTTCTGAA
CCATGGCCAGACGACACGGTAGGTATCAACATCGCTCTCCTCGAGTTGTT
TTCTGTCTTCACAGCCATCAGCACATGGTCAAACCAGCTTCAGCACAGGT
CCATCTGTGTCTTCACGGACAACGAGGCTATTGTTACAATATGGGCATCA
GGTTCCTCTAAGGATGCGGTTATTTCGGCACTTATGCGTTCAATGTTCTT
TCTCTGCACTCGTCACAATATTTCCATCTCATTTAAGCATGTTCCAGGTG
TTGATAATGTCTATGCAGATCTTCTTTCTCGGTTGCAGGTCGATCATTTC
TTGTCAATTTGCCCTTCCGCACATCCGCTTCCATCACCAATCCCACCGGC
AGTCTGGCAGTGTTGGAAAGATCTTTGGTCAGCTTCTTAAGACAGTCTGT
CGCCCAATCCACATCAGCCACTTATATGACAGGTGTTCGCTCCTACATCA
ACTTTTGTGGTTCTCTTAGCATCCTTGCTTTTCCAGTACGTGAATCTTCA
TTGTGTTACTTTGTCACAGCCAAAGCCAACCGAGGCCTGGCGCACGGATC
AATCAAGGTTTACGTCTGTGGAGTACTTCACCAAAATACGTTGCTTGGTT
TTAGTTCATCAATGTCTTCCTACCCTCTTCTGTTTCACACACTACGTGGT
ATCCGCCGTGCCCAAGGTAACTCTCGTCGCAGGGCACCAAAGCTTCCAAT
AACAGTTGAACACATGTTTCGTATCGCCAATCACATCCGGCAGTCAAAAA
TGCCTACCAGAGACAAATTTATGTACATGGCAGCagttcttacagcattc
tttgGACTTCTTCGGGTCTCTGAGTACAACTCTCCATCTACAACTCACTA
CGACAGCTCACTACATCTAACTAGATCAGACATCTCATTCAACAGACAGG
TCAGTATCATGTTCCTGCGCATCAAGGGTAGCAAAACAGATCCTTTTAGA
GTTGGACACACCTTGTAGAGTCCCTGCGCTCCTTGACCCAGTCACTGCTA
TGCTCTCTTACCTGCGTTACCTACCCAATGACCCACTCCCTCTCTTTCGA
ACTGTCCAAGGACAATTCCTTACACGACGACATATTAGCAATCTACTTTC
ACAGGCGCTCCCGGGAGTCAACCACATTAGCACCCACAGCTTTAGAATAG
GTGGTGCTTCTGCTGCTTTGTCTGCTGGCGCTTCTGATGCTCTTATCAAA
ATACTCGGTCGATGGTCTAGTGACTGCTACATCCGCTACTTACGAGTCTC
TGACAACCTTGTTGCTGACTTCCAAAAACTTATGGCAAAGGTATCCAGTA
CTACGTCCGTGTGGGACCCTGACATGATCTAAGCTAGTTTTTCTTTTAGN
N Coding sequence (CDS) from alignment at sc0000024:616780..618430+ >TCONS_00002957 ID=TCONS_00002957|Name=TCONS_00002957|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000024:616780..618430+ (Clytia hemisphaerica)
AAACGAGAGCTGTTATCATTGATTGGCTCACTTTCCTTTGCTTGTCGTGT
TATTAAGCCCGGAAGAATTTTTCTCAGACGTCTTATTGATCTTGCTCACT
CTGTTCGCTCTCTGCATCATCACATAGACATCTCGGTCTCAGTTAGGGAG
GATCTTGCCATGTGGTCTGTGTTTCTACAGTCTTGGAAcggatgttcttt
tttccagCAGCCAACTACATCTTCTTTTGCCCTCAATTTATTCACTGATG
CTTCTAAGCTGGGCCTTGGAGCCTTCTTCCACAATCAATGGATTTCTGAA
CCATGGCCAGACGACACGGTAGGTATCAACATCGCTCTCCTCGAGTTGTT
TTCTGTCTTCACAGCCATCAGCACATGGTCAAACCAGCTTCAGCACAGGT
CCATCTGTGTCTTCACGGACAACGAGGCTATTGTTACAATATGGGCATCA
GGTTCCTCTAAGGATGCGGTTATTTCGGCACTTATGCGTTCAATGTTCTT
TCTCTGCACTCGTCACAATATTTCCATCTCATTTAAGCATGTTCCAGGTG
TTGATAATGTCTATGCAGATCTTCTTTCTCGGTTGCAGGTCGATCATTTC
TTGTCAATTTGCCCTTCCGCACATCCGCTTCCATCACCAATCCCACCGGC
AGTCTGGCAGTGTTGGAAAGATCTTTGGTCAGCTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002957-exon-sc0000024-1491911889:616780..618430 | TCONS_00002957-exon-sc0000024-1491911889:616780..618430 | Clytia hemisphaerica | exon |
| TCONS_00002957-exon-sc0000024-1510915933:616780..618430 | TCONS_00002957-exon-sc0000024-1510915933:616780..618430 | Clytia hemisphaerica | exon |
| TCONS_00002957-exon-sc0000024-1575043694:616780..618430 | TCONS_00002957-exon-sc0000024-1575043694:616780..618430 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:616780..618430 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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