|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=transcript|length=1517bp
GGACCCTGTCCCTGAGCACCTAAGAGACATTTTCTACACTGTCGTAGCAC
TCAAATCTGAGAGCCATTATTCGACCAACAATTGACATGATACAatgtca
ttttcaaaacaaattatgtGAATATTTGAAAGGTGTATGGTACCGTAAAT
gacaaaatatttccttcttttTAGAACAtagagaaaaataagaataacac
AATACCAAAAGAAGACAAGTTACCTCAAGGTTTAATAATGATTGGTTCAA
ACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGA
GGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAAAACGATC
TTCATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGATTTCAACA
ACAATTTCAATATGATTGAAGATGTCACACATGATGAAGAATCAGCTCGC
CGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCATCAAATC
CGATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCCAATATTT
ATGATATCGATGAAGAGGGTGATGAAATGATGGAACAATTTAAACCTTCA
GAGCGGGAATGGGACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGG
GGACTCAGACATTGAAAATGCATTCAaaactttaaagatttttgagaGTA
GTGGTGGGAAGTTGTTAgttgaacaaaagaaaaaagtggaGGGGAAAGAT
TCTACTATAGAAAAGTTACCGTCAAATTGTCGAACATGGAAAAGTGAACT
TCTAGAAGATGAATGTATTGAGGATGAAAAGGAAAACGAAAAAaagatga
agaccaaagtccGTGAATGGGATCGAGGAAAGGTCTGGGACGAGTTTAAT
GGTATGTGGATCACAAAAGGAAGAAAAGATTCATCGCTTGGTGAGGGTTA
TTATCTTCATGATGAAAGGTGATTTGTAATATTATTTGGTGTGTTTaact
ttgagttatttatagtttcatgttttgtttttatttaagttTTTCAATGT
TGAAGTGTAATACTTAGTTTTTCCTGAGTGCAATTTCCTTAATTCTAGAT
TTGACCAGGAATATTGGAGTCTCACGTTGCATAAAAGTTTTCTCTTCAAC
CATAACTCCCTTCCCCCATTCCCCTTCCATTTTCCACCCCATTTATCCTT
TTCCACCCCCTAACAACAATAATATTATGGTGAAACTTTTATATTTGCAA
CCTCCCTTGATGTTTTTCTGCTCTCCAATTTTCATgattatatatattat
attaaaAGGATCGATTTTTTATGGGATTTGTTTAtatgttttttaatttt
ccgaaaattagTGTAAAGAAGTACAATGGTTAAAGGAAAATTCACATAAA
GATGATAAAAGGGTTTTGATAAAACCATACAATTAAGATTTTATACGCTC
ACAACACTGTATATTTAtctctaaaaaaattaatcccTCATGTAATGGGG
AGATATTTGAAAAAGTG Run BLAST on NCBI protein sequence of TCONS_00002947-protein >TCONS_00002947-protein ID=TCONS_00002947-protein|Name=TCONS_00002947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MIGSNMAGIGRGRGKGRGRGRGKEVKTTFNEAILLKRSSSMPVRMDQLTL
SDFNNNFNMIEDVTHDEESARRFVKSQLFRKGIQSIKSDYKRQQDEIRKS
MPNIYDIDEEGDEMMEQFKPSEREWDKGKKFNGSNYGGDSDIENAFKTLK
IFESSGGKLLVEQKKKVEGKDSTIEKLPSNCRTWKSELLEDECIEDEKEN
EKKMKTKVREWDRGKVWDEFNGMWITKGRKDSSLGEGYYLHDER Run BLAST on NCBI transcript from alignment at sc0000024:240356..243599+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=transcript|length=3244bp|location=Sequence derived from alignment at sc0000024:240356..243599+ (Clytia hemisphaerica)
GGACCCTGTCCCTGAGCACCTAAGAGACATTTTCTACACTGTCGTAGCAC
TCAAATCTGAGAGCCATTATTCGACCAACAATTGACATGATACAatgtca
ttttcaaaacaaattatgtGAATATTTGAAAGGTGTATGGTACCGTAAAT
gacaaaatatttccttcttttTAGAACAtagagaaaaataagaataacac
AATACCAAAAGAAGACAAGTTACCTCAAGGTTTAATAATGATTGGTTGTA
AGTTTTCACATTCTTTGAATAAATAATGAAATAGCGCTCTGTGtcataat
tattttatttagctGAATTTTGTACAGATTTCTAAATTATTGGTAAACAG
TACAAgttattgtctttttttttagcAGAGCATCATTAGCAATTAGTCCA
TTTAATTTGTATGCACTAATTCTTATTTATTTTCGCTTCTCATAATTCTG
GAACAATGAATTaattttcatagattttctAATGCTGTAAATTAGTCTCG
AGCACTATAACTTAAAAATAAGTGAAATTGGCTAGATCATTTGATaacaa
aatgtaaataaaataaGATTTAGTGTACTGTACACTTTTGAAGCAAATTA
TAATTCATTACTATAACAGTAGCAAACAGAATCGGTTACTACTAAGTATT
GTTTTGAGAgtgtttctttaaaaatttaaacaaaattgcTGTTGTTTTTC
TCAGCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAG
AGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAA
AACGATCTTCATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGAT
TTCAACAACAATTTCAATATGATTGAAGATGTCACACATGATGAAGAATC
AGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCA
TCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCC
AATATTTATGATATCGATGAAGAGGGTAATGTAGAATCATTTTAATCATT
CTTTTAGCACTCTGAGCTAGAACCGTTTTTCGTAAATTTAGATTGAGTTT
CTAATGCCTGAAAGGGCATCATTGATGAAGCTGGGGGTCTGAGGGCGCTT
TAAAGCCCCCTAGTGGGTACAGAGGGCAAagctcaaaaaattttgaatat
gtaGATTGTATTAgctatttttacaaaaaagtttaattttgcttaaatat
tttttctattttggattGAGTTTTAAGAACtcaattttggattttggatt
gagtattttggccggTATACCCACACAAAAAAAGTGCGTAGAAAAATCTC
TGTTGCTTAGGTATTGAGAGGAGGAATGGCGTCAGCCAAAACCAAGGTAT
TCTCTGATGTCCACCAGTTGTTACAGCCAATCAAAGCTTTACTcaacgtt
ttttcgtgacttttttacatgaatctgctaatagaaAATTTGTGTATTTC
CATAGGTGATGAAATGATGGAACAATTTAAACCTTCAGAGCGGGAATGGG
ACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGGGGACTCAGACATT
GAAAATGCATTCAaaactttaaagatttttgagaGTAGTGGTGGGAAGTT
GTATGTTNttcttataaaaaaacgtttagaaaccaaaatttcatgccctt
gaaatattctttcatattcaagataGTAGGGGGCCAAACCTTAGGATCCG
TGACAACTTTTCTGGGACGCAACAACACGAATTTATTTCGAAAGTTTAAT
GtatttaaagtcattttagCGAGGGGGGTCCGCTGCTAAGGcctggcaaa
attttttatgggcCAAAGACTGACGTTACAGGCAAAGCTGtaaaggcaaa
aaatgggtaaaaaaattgacgatttttgaaagtCATATTCAACGGAAACG
ATCGATACCATcggatagagcatgaaattctgagcaaaaaagtatactac
aaCAAGTCCCATACTTAAACACACAAGGAAATACGGCCATTTGAAGTTTG
AAATACTGTCAGTTTGAatacgattgacgtcaaattttgtctaaatcatA
AACAAACTGACAGTATTTTGAACTTAAAATAGCCGTATTTCTTCGTGTGT
TTGAGTAAGGGACTTGttgtagtatacttttttgctcaaaatttcaCGCT
CTATCGGATGGTATCGATCGTTTCCGTTGAAAACGactttcaaaaatcgt
caattttttacccattttttgcctttaCAGCTTTGCCTGTAACGTCAGTC
TTTGGCCCATAAAGAATTTTGCCAGGCCTTAGCAGCGGACCCCCCTCGct
aaaatgactttaaataCATTAAACTTTCGAAATAAATTCGTGTTGTTGCG
TCCCAGAAAAGTTGTCACGGATCCTAAGGTTTGGCCCCCTACTAgttgaa
caaaagaaaaaagtggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTC
AAATTGTCGAACATGGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGG
ATGAAAAGGAAAACGAAAAAaagatgaagaccaaagtccGTGAATGGGAT
CGAGGAAAGGTCTGGGACGAGTTTAATGGTATGTGGATCACAAAAGGAAG
AAAAGATTCATCGCTTGGTGAGGGTTATTATCTTCATGATGAAAGGTGAT
TTGTAATATTATTTGGTGTGTTTaactttgagttatttatagtttcatgt
tttgtttttatttaagttTTTCAATGTTGAAGTGTAATACTTAGTTTTTC
CTGAGTGCAATTTCCTTAATTCTAGATTTGACCAGGAATATTGGAGTCTC
ACGTTGCATAAAAGTTTTCTCTTCAACCATAACTCCCTTCCCCCATTCCC
CTTCCATTTTCCACCCCATTTATCCTTTTCCACCCCCTAACAACAATAAT
ATTATGGTGAAACTTTTATATTTGCAACCTCCCTTGATGTTTTTCTGCTC
TCCAATTTTCATgattatatatattatattaaaAGGATCGATTTTTTATG
GGATTTGTTTAtatgttttttaattttccgaaaattagTGTAAAGAAGTA
CAATGGTTAAAGGAAAATTCACATAAAGATGATAAAAGGGTTTTGATAAA
ACCATACAATTAAGATTTTATACGCTCACAACACTGTATATTTAtctcta
aaaaaattaatcccTCATGTAATGGGGAGATATTTGAAAAAGTG Coding sequence (CDS) from alignment at sc0000024:240356..243599+ >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000024:240356..243599+ (Clytia hemisphaerica)
ATGATTGGTTCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCG
TGGGAGAGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCT
TGCTAAAACGATCTTCATCTATGCCTGTACGTATGGACCAACTAACCCTC
TCAGATTTCAACAACAATTTCAATATGATTGAAGATGTCACACATGATGA
AGAATCAGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTC
AATCCATCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGAAATCG
ATGCCCAATATTTATGATATCGATGAAGAGGGTGATGAAATGATGGAACA
ATTTAAACCTTCAGAGCGGGAATGGGACAAGGGCAAGAAATTTAACGGAT
CGAACTATGGTGGGGACTCAGACATTGAAAATGCATTCAaaactttaaag
atttttgagaGTAGTGGTGGGAAGTTGTTAgttgaacaaaagaaaaaagt
ggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTCAAATTGTCGAACAT
GGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGGATGAAAAGGAAAAC
GAAAAAaagatgaagaccaaagtccGTGAATGGGATCGAGGAAAGGTCTG
GGACGAGTTTAATGGTATGTGGATCACAAAAGGAAGAAAAGATTCATCGC
TTGGTGAGGGTTATTATCTTCATGATGAAAGGTGAATGATTGGTTCAAAC
ATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGAGG
AAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAAAACGATCTT
CATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGATTTCAACAAC
AATTTCAATATGATTGAAGATGTCACACATGATGAAGAATCAGCTCGCCG
ATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCATCAAATCCG
ATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCCAATATTTAT
GATATCGATGAAGAGGGTGATGAAATGATGGAACAATTTAAACCTTCAGA
GCGGGAATGGGACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGGGG
ACTCAGACATTGAAAATGCATTCAaaactttaaagatttttgagaGTAGT
GGTGGGAAGTTGTTAgttgaacaaaagaaaaaagtggaGGGGAAAGATTC
TACTATAGAAAAGTTACCGTCAAATTGTCGAACATGGAAAAGTGAACTTC
TAGAAGATGAATGTATTGAGGATGAAAAGGAAAACGAAAAAaagatgaag
accaaagtccGTGAATGGGATCGAGGAAAGGTCTGGGACGAGTTTAATGG
TATGTGGATCACAAAAGGAAGAAAAGATTCATCGCTTGGTGAGGGTTATT
ATCTTCATGATGAAAGGTGAATGATTGGTTCAAACATGGCTGGTATTGGA
CGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGAGGAAAAGAAGTCAAAAC
AACATTTAATGAAGCCATCTTGCTAAAACGATCTTCATCTATGCCTGTAC
GTATGGACCAACTAACCCTCTCAGATTTCAACAACAATTTCAATATGATT
GAAGATGTCACACATGATGAAGAATCAGCTCGCCGATTTGTGAAAAGTCA
ATTATTCCGAAAAGGCATTCAATCCATCAAATCCGATTATAAACGCCAAC
AAGACGAGATTAGGAAATCGATGCCCAATATTTATGATATCGATGAAGAG
GGTGATGAAATGATGGAACAATTTAAACCTTCAGAGCGGGAATGGGACAA
GGGCAAGAAATTTAACGGATCGAACTATGGTGGGGACTCAGACATTGAAA
ATGCATTCAaaactttaaagatttttgagaGTAGTGGTGGGAAGTTGTTA
gttgaacaaaagaaaaaagtggaGGGGAAAGATTCTACTATAGAAAAGTT
ACCGTCAAATTGTCGAACATGGAAAAGTGAACTTCTAGAAGATGAATGTA
TTGAGGATGAAAAGGAAAACGAAAAAaagatgaagaccaaagtccGTGAA
TGGGATCGAGGAAAGGTCTGGGACGAGTTTAATGGTATGTGGATCACAAA
AGGAAGAAAAGATTCATCGCTTGGTGAGGGTTATTATCTTCATGATGAAA
GGTGAATGATTGGTTCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAA
GGGCGTGGGAGAGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGC
CATCTTGCTAAAACGATCTTCATCTATGCCTGTACGTATGGACCAACTAA
CCCTCTCAGATTTCAACAACAATTTCAATATGATTGAAGATGTCACACAT
GATGAAGAATCAGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGG
CATTCAATCCATCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGA
AATCGATGCCCAATATTTATGATATCGATGAAGAGGGTGATGAAATGATG
GAACAATTTAAACCTTCAGAGCGGGAATGGGACAAGGGCAAGAAATTTAA
CGGATCGAACTATGGTGGGGACTCAGACATTGAAAATGCATTCAaaactt
taaagatttttgagaGTAGTGGTGGGAAGTTGTTAgttgaacaaaagaaa
aaagtggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTCAAATTGTCG
AACATGGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGGATGAAAAGG
AAAACGAAAAAaagatgaagaccaaagtccGTGAATGGGATCGAGGAAAG
GTCTGGGACGAGTTTAATGGTATGTGGATCACAAAAGGAAGAAAAGATTC
ATCGCTTGGTGAGGGTTATTATCTTCATGATGAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002947-exon-sc0000024-1491911889:240356..240602 | TCONS_00002947-exon-sc0000024-1491911889:240356..240602 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1510915933:240356..240602 | TCONS_00002947-exon-sc0000024-1510915933:240356..240602 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1575043694:240356..240602 | TCONS_00002947-exon-sc0000024-1575043694:240356..240602 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1491911889:241060..241380 | TCONS_00002947-exon-sc0000024-1491911889:241060..241380 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1510915933:241060..241380 | TCONS_00002947-exon-sc0000024-1510915933:241060..241380 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1575043694:241060..241380 | TCONS_00002947-exon-sc0000024-1575043694:241060..241380 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1491911889:241861..242007 | TCONS_00002947-exon-sc0000024-1491911889:241861..242007 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1510915933:241861..242007 | TCONS_00002947-exon-sc0000024-1510915933:241861..242007 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1575043694:241861..242007 | TCONS_00002947-exon-sc0000024-1575043694:241861..242007 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1491911889:242798..243599 | TCONS_00002947-exon-sc0000024-1491911889:242798..243599 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1510915933:242798..243599 | TCONS_00002947-exon-sc0000024-1510915933:242798..243599 | Clytia hemisphaerica | exon |
| TCONS_00002947-exon-sc0000024-1575043694:242798..243599 | TCONS_00002947-exon-sc0000024-1575043694:242798..243599 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:240356..243599 + |
Blast
The following BLAST results are available for this feature:
|
