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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=transcript|length=1517bp GGACCCTGTCCCTGAGCACCTAAGAGACATTTTCTACACTGTCGTAGCAC TCAAATCTGAGAGCCATTATTCGACCAACAATTGACATGATACAatgtca ttttcaaaacaaattatgtGAATATTTGAAAGGTGTATGGTACCGTAAAT gacaaaatatttccttcttttTAGAACAtagagaaaaataagaataacac AATACCAAAAGAAGACAAGTTACCTCAAGGTTTAATAATGATTGGTTCAA ACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGA GGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAAAACGATC TTCATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGATTTCAACA ACAATTTCAATATGATTGAAGATGTCACACATGATGAAGAATCAGCTCGC CGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCATCAAATC CGATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCCAATATTT ATGATATCGATGAAGAGGGTGATGAAATGATGGAACAATTTAAACCTTCA GAGCGGGAATGGGACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGG GGACTCAGACATTGAAAATGCATTCAaaactttaaagatttttgagaGTA GTGGTGGGAAGTTGTTAgttgaacaaaagaaaaaagtggaGGGGAAAGAT TCTACTATAGAAAAGTTACCGTCAAATTGTCGAACATGGAAAAGTGAACT TCTAGAAGATGAATGTATTGAGGATGAAAAGGAAAACGAAAAAaagatga agaccaaagtccGTGAATGGGATCGAGGAAAGGTCTGGGACGAGTTTAAT GGTATGTGGATCACAAAAGGAAGAAAAGATTCATCGCTTGGTGAGGGTTA TTATCTTCATGATGAAAGGTGATTTGTAATATTATTTGGTGTGTTTaact ttgagttatttatagtttcatgttttgtttttatttaagttTTTCAATGT TGAAGTGTAATACTTAGTTTTTCCTGAGTGCAATTTCCTTAATTCTAGAT TTGACCAGGAATATTGGAGTCTCACGTTGCATAAAAGTTTTCTCTTCAAC CATAACTCCCTTCCCCCATTCCCCTTCCATTTTCCACCCCATTTATCCTT TTCCACCCCCTAACAACAATAATATTATGGTGAAACTTTTATATTTGCAA CCTCCCTTGATGTTTTTCTGCTCTCCAATTTTCATgattatatatattat attaaaAGGATCGATTTTTTATGGGATTTGTTTAtatgttttttaatttt ccgaaaattagTGTAAAGAAGTACAATGGTTAAAGGAAAATTCACATAAA GATGATAAAAGGGTTTTGATAAAACCATACAATTAAGATTTTATACGCTC ACAACACTGTATATTTAtctctaaaaaaattaatcccTCATGTAATGGGG AGATATTTGAAAAAGTG Run BLAST on NCBI protein sequence of TCONS_00002947-protein >TCONS_00002947-protein ID=TCONS_00002947-protein|Name=TCONS_00002947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MIGSNMAGIGRGRGKGRGRGRGKEVKTTFNEAILLKRSSSMPVRMDQLTL SDFNNNFNMIEDVTHDEESARRFVKSQLFRKGIQSIKSDYKRQQDEIRKS MPNIYDIDEEGDEMMEQFKPSEREWDKGKKFNGSNYGGDSDIENAFKTLK IFESSGGKLLVEQKKKVEGKDSTIEKLPSNCRTWKSELLEDECIEDEKEN EKKMKTKVREWDRGKVWDEFNGMWITKGRKDSSLGEGYYLHDER Run BLAST on NCBI transcript from alignment at sc0000024:240356..243599+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=transcript|length=3244bp|location=Sequence derived from alignment at sc0000024:240356..243599+ (Clytia hemisphaerica) GGACCCTGTCCCTGAGCACCTAAGAGACATTTTCTACACTGTCGTAGCAC
TCAAATCTGAGAGCCATTATTCGACCAACAATTGACATGATACAatgtca
ttttcaaaacaaattatgtGAATATTTGAAAGGTGTATGGTACCGTAAAT
gacaaaatatttccttcttttTAGAACAtagagaaaaataagaataacac
AATACCAAAAGAAGACAAGTTACCTCAAGGTTTAATAATGATTGGTTGTA
AGTTTTCACATTCTTTGAATAAATAATGAAATAGCGCTCTGTGtcataat
tattttatttagctGAATTTTGTACAGATTTCTAAATTATTGGTAAACAG
TACAAgttattgtctttttttttagcAGAGCATCATTAGCAATTAGTCCA
TTTAATTTGTATGCACTAATTCTTATTTATTTTCGCTTCTCATAATTCTG
GAACAATGAATTaattttcatagattttctAATGCTGTAAATTAGTCTCG
AGCACTATAACTTAAAAATAAGTGAAATTGGCTAGATCATTTGATaacaa
aatgtaaataaaataaGATTTAGTGTACTGTACACTTTTGAAGCAAATTA
TAATTCATTACTATAACAGTAGCAAACAGAATCGGTTACTACTAAGTATT
GTTTTGAGAgtgtttctttaaaaatttaaacaaaattgcTGTTGTTTTTC
TCAGCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAG
AGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAA
AACGATCTTCATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGAT
TTCAACAACAATTTCAATATGATTGAAGATGTCACACATGATGAAGAATC
AGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCA
TCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCC
AATATTTATGATATCGATGAAGAGGGTAATGTAGAATCATTTTAATCATT
CTTTTAGCACTCTGAGCTAGAACCGTTTTTCGTAAATTTAGATTGAGTTT
CTAATGCCTGAAAGGGCATCATTGATGAAGCTGGGGGTCTGAGGGCGCTT
TAAAGCCCCCTAGTGGGTACAGAGGGCAAagctcaaaaaattttgaatat
gtaGATTGTATTAgctatttttacaaaaaagtttaattttgcttaaatat
tttttctattttggattGAGTTTTAAGAACtcaattttggattttggatt
gagtattttggccggTATACCCACACAAAAAAAGTGCGTAGAAAAATCTC
TGTTGCTTAGGTATTGAGAGGAGGAATGGCGTCAGCCAAAACCAAGGTAT
TCTCTGATGTCCACCAGTTGTTACAGCCAATCAAAGCTTTACTcaacgtt
ttttcgtgacttttttacatgaatctgctaatagaaAATTTGTGTATTTC
CATAGGTGATGAAATGATGGAACAATTTAAACCTTCAGAGCGGGAATGGG
ACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGGGGACTCAGACATT
GAAAATGCATTCAaaactttaaagatttttgagaGTAGTGGTGGGAAGTT
GTATGTTNttcttataaaaaaacgtttagaaaccaaaatttcatgccctt
gaaatattctttcatattcaagataGTAGGGGGCCAAACCTTAGGATCCG
TGACAACTTTTCTGGGACGCAACAACACGAATTTATTTCGAAAGTTTAAT
GtatttaaagtcattttagCGAGGGGGGTCCGCTGCTAAGGcctggcaaa
attttttatgggcCAAAGACTGACGTTACAGGCAAAGCTGtaaaggcaaa
aaatgggtaaaaaaattgacgatttttgaaagtCATATTCAACGGAAACG
ATCGATACCATcggatagagcatgaaattctgagcaaaaaagtatactac
aaCAAGTCCCATACTTAAACACACAAGGAAATACGGCCATTTGAAGTTTG
AAATACTGTCAGTTTGAatacgattgacgtcaaattttgtctaaatcatA
AACAAACTGACAGTATTTTGAACTTAAAATAGCCGTATTTCTTCGTGTGT
TTGAGTAAGGGACTTGttgtagtatacttttttgctcaaaatttcaCGCT
CTATCGGATGGTATCGATCGTTTCCGTTGAAAACGactttcaaaaatcgt
caattttttacccattttttgcctttaCAGCTTTGCCTGTAACGTCAGTC
TTTGGCCCATAAAGAATTTTGCCAGGCCTTAGCAGCGGACCCCCCTCGct
aaaatgactttaaataCATTAAACTTTCGAAATAAATTCGTGTTGTTGCG
TCCCAGAAAAGTTGTCACGGATCCTAAGGTTTGGCCCCCTACTAgttgaa
caaaagaaaaaagtggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTC
AAATTGTCGAACATGGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGG
ATGAAAAGGAAAACGAAAAAaagatgaagaccaaagtccGTGAATGGGAT
CGAGGAAAGGTCTGGGACGAGTTTAATGGTATGTGGATCACAAAAGGAAG
AAAAGATTCATCGCTTGGTGAGGGTTATTATCTTCATGATGAAAGGTGAT
TTGTAATATTATTTGGTGTGTTTaactttgagttatttatagtttcatgt
tttgtttttatttaagttTTTCAATGTTGAAGTGTAATACTTAGTTTTTC
CTGAGTGCAATTTCCTTAATTCTAGATTTGACCAGGAATATTGGAGTCTC
ACGTTGCATAAAAGTTTTCTCTTCAACCATAACTCCCTTCCCCCATTCCC
CTTCCATTTTCCACCCCATTTATCCTTTTCCACCCCCTAACAACAATAAT
ATTATGGTGAAACTTTTATATTTGCAACCTCCCTTGATGTTTTTCTGCTC
TCCAATTTTCATgattatatatattatattaaaAGGATCGATTTTTTATG
GGATTTGTTTAtatgttttttaattttccgaaaattagTGTAAAGAAGTA
CAATGGTTAAAGGAAAATTCACATAAAGATGATAAAAGGGTTTTGATAAA
ACCATACAATTAAGATTTTATACGCTCACAACACTGTATATTTAtctcta
aaaaaattaatcccTCATGTAATGGGGAGATATTTGAAAAAGTG Coding sequence (CDS) from alignment at sc0000024:240356..243599+ >TCONS_00002947 ID=TCONS_00002947|Name=TCONS_00002947|organism=Clytia hemisphaerica|type=CDS|length=2940bp|location=Sequence derived from alignment at sc0000024:240356..243599+ (Clytia hemisphaerica) ATGATTGGTTCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCG TGGGAGAGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGCCATCT TGCTAAAACGATCTTCATCTATGCCTGTACGTATGGACCAACTAACCCTC TCAGATTTCAACAACAATTTCAATATGATTGAAGATGTCACACATGATGA AGAATCAGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTC AATCCATCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGAAATCG ATGCCCAATATTTATGATATCGATGAAGAGGGTGATGAAATGATGGAACA ATTTAAACCTTCAGAGCGGGAATGGGACAAGGGCAAGAAATTTAACGGAT CGAACTATGGTGGGGACTCAGACATTGAAAATGCATTCAaaactttaaag atttttgagaGTAGTGGTGGGAAGTTGTTAgttgaacaaaagaaaaaagt ggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTCAAATTGTCGAACAT GGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGGATGAAAAGGAAAAC GAAAAAaagatgaagaccaaagtccGTGAATGGGATCGAGGAAAGGTCTG GGACGAGTTTAATGGTATGTGGATCACAAAAGGAAGAAAAGATTCATCGC TTGGTGAGGGTTATTATCTTCATGATGAAAGGTGAATGATTGGTTCAAAC ATGGCTGGTATTGGACGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGAGG AAAAGAAGTCAAAACAACATTTAATGAAGCCATCTTGCTAAAACGATCTT CATCTATGCCTGTACGTATGGACCAACTAACCCTCTCAGATTTCAACAAC AATTTCAATATGATTGAAGATGTCACACATGATGAAGAATCAGCTCGCCG ATTTGTGAAAAGTCAATTATTCCGAAAAGGCATTCAATCCATCAAATCCG ATTATAAACGCCAACAAGACGAGATTAGGAAATCGATGCCCAATATTTAT GATATCGATGAAGAGGGTGATGAAATGATGGAACAATTTAAACCTTCAGA GCGGGAATGGGACAAGGGCAAGAAATTTAACGGATCGAACTATGGTGGGG ACTCAGACATTGAAAATGCATTCAaaactttaaagatttttgagaGTAGT GGTGGGAAGTTGTTAgttgaacaaaagaaaaaagtggaGGGGAAAGATTC TACTATAGAAAAGTTACCGTCAAATTGTCGAACATGGAAAAGTGAACTTC TAGAAGATGAATGTATTGAGGATGAAAAGGAAAACGAAAAAaagatgaag accaaagtccGTGAATGGGATCGAGGAAAGGTCTGGGACGAGTTTAATGG TATGTGGATCACAAAAGGAAGAAAAGATTCATCGCTTGGTGAGGGTTATT ATCTTCATGATGAAAGGTGAATGATTGGTTCAAACATGGCTGGTATTGGA CGTGGTCGTGGTAAAGGGCGTGGGAGAGGACGAGGAAAAGAAGTCAAAAC AACATTTAATGAAGCCATCTTGCTAAAACGATCTTCATCTATGCCTGTAC GTATGGACCAACTAACCCTCTCAGATTTCAACAACAATTTCAATATGATT GAAGATGTCACACATGATGAAGAATCAGCTCGCCGATTTGTGAAAAGTCA ATTATTCCGAAAAGGCATTCAATCCATCAAATCCGATTATAAACGCCAAC AAGACGAGATTAGGAAATCGATGCCCAATATTTATGATATCGATGAAGAG GGTGATGAAATGATGGAACAATTTAAACCTTCAGAGCGGGAATGGGACAA GGGCAAGAAATTTAACGGATCGAACTATGGTGGGGACTCAGACATTGAAA ATGCATTCAaaactttaaagatttttgagaGTAGTGGTGGGAAGTTGTTA gttgaacaaaagaaaaaagtggaGGGGAAAGATTCTACTATAGAAAAGTT ACCGTCAAATTGTCGAACATGGAAAAGTGAACTTCTAGAAGATGAATGTA TTGAGGATGAAAAGGAAAACGAAAAAaagatgaagaccaaagtccGTGAA TGGGATCGAGGAAAGGTCTGGGACGAGTTTAATGGTATGTGGATCACAAA AGGAAGAAAAGATTCATCGCTTGGTGAGGGTTATTATCTTCATGATGAAA GGTGAATGATTGGTTCAAACATGGCTGGTATTGGACGTGGTCGTGGTAAA GGGCGTGGGAGAGGACGAGGAAAAGAAGTCAAAACAACATTTAATGAAGC CATCTTGCTAAAACGATCTTCATCTATGCCTGTACGTATGGACCAACTAA CCCTCTCAGATTTCAACAACAATTTCAATATGATTGAAGATGTCACACAT GATGAAGAATCAGCTCGCCGATTTGTGAAAAGTCAATTATTCCGAAAAGG CATTCAATCCATCAAATCCGATTATAAACGCCAACAAGACGAGATTAGGA AATCGATGCCCAATATTTATGATATCGATGAAGAGGGTGATGAAATGATG GAACAATTTAAACCTTCAGAGCGGGAATGGGACAAGGGCAAGAAATTTAA CGGATCGAACTATGGTGGGGACTCAGACATTGAAAATGCATTCAaaactt taaagatttttgagaGTAGTGGTGGGAAGTTGTTAgttgaacaaaagaaa aaagtggaGGGGAAAGATTCTACTATAGAAAAGTTACCGTCAAATTGTCG AACATGGAAAAGTGAACTTCTAGAAGATGAATGTATTGAGGATGAAAAGG AAAACGAAAAAaagatgaagaccaaagtccGTGAATGGGATCGAGGAAAG GTCTGGGACGAGTTTAATGGTATGTGGATCACAAAAGGAAGAAAAGATTC ATCGCTTGGTGAGGGTTATTATCTTCATGATGAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002947-exon-sc0000024-1491911889:240356..240602 | TCONS_00002947-exon-sc0000024-1491911889:240356..240602 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1510915933:240356..240602 | TCONS_00002947-exon-sc0000024-1510915933:240356..240602 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1575043694:240356..240602 | TCONS_00002947-exon-sc0000024-1575043694:240356..240602 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1491911889:241060..241380 | TCONS_00002947-exon-sc0000024-1491911889:241060..241380 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1510915933:241060..241380 | TCONS_00002947-exon-sc0000024-1510915933:241060..241380 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1575043694:241060..241380 | TCONS_00002947-exon-sc0000024-1575043694:241060..241380 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1491911889:241861..242007 | TCONS_00002947-exon-sc0000024-1491911889:241861..242007 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1510915933:241861..242007 | TCONS_00002947-exon-sc0000024-1510915933:241861..242007 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1575043694:241861..242007 | TCONS_00002947-exon-sc0000024-1575043694:241861..242007 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1491911889:242798..243599 | TCONS_00002947-exon-sc0000024-1491911889:242798..243599 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1510915933:242798..243599 | TCONS_00002947-exon-sc0000024-1510915933:242798..243599 | Clytia hemisphaerica | exon |
TCONS_00002947-exon-sc0000024-1575043694:242798..243599 | TCONS_00002947-exon-sc0000024-1575043694:242798..243599 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000024 | supercontig | sc0000024:240356..243599 + |
Blast
The following BLAST results are available for this feature:
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