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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002946 ID=TCONS_00002946|Name=TCONS_00002946|organism=Clytia hemisphaerica|type=transcript|length=2487bpRun BLAST on NCBI protein sequence of TCONS_00002946-protein >TCONS_00002946-protein ID=TCONS_00002946-protein|Name=TCONS_00002946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp FSIINTETMRSIQNAILIGVLSLFLYVYCKVNTEPKVAKAGYSNAKRDDKRun BLAST on NCBI transcript from alignment at sc0000024:147143..158939+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002946 ID=TCONS_00002946|Name=TCONS_00002946|organism=Clytia hemisphaerica|type=transcript|length=11797bp|location=Sequence derived from alignment at sc0000024:147143..158939+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000024:147143..158939+ >TCONS_00002946 ID=TCONS_00002946|Name=TCONS_00002946|organism=Clytia hemisphaerica|type=CDS|length=21492bp|location=Sequence derived from alignment at sc0000024:147143..158939+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002946 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 287.345 bits (734), Expect = 6.876e-86 Identity = 199/543 (36.65%), Postives = 296/543 (54.51%), Query Frame = 3
Query: 195 FNKYAVAADNVICSRMGKDILRQGGNAADAIVTTHCCTEIINSHSTXXXXXXXXXYYDKDTNKATSYNFREALPE-KYVEGINKT-----AGETVLVPGVLRGLEAVHQDYGKLEWKELWKPCINLAEKGFRIHHALEMAIAHKAMFIHRNLGLKELYAPXXXXXXXXXXXXRTKLAKTYRLIADKGAKEFYEGEMAKQIVADLKQHGGKMSLEDLKKYQVIKEETPIHIKLKGMDMYSTSAPSSGAWLALCLKVIENLDMTAKKYKKNPTR---IYHQFVEAFKYSYAAASYLSDTKFNKNANKIEQWMLKPETAKEIAQRIDDHSYQVEHYQPYSKAFLEDKKGTTHMGALDAHGSAVSLTSSINAYFGSKIRSRVLGFMYNNELADFS------EFW--PQLYNLTRDEKIPGKRPISRSMPTIFV-KNKEVQGVFXXXXXXFIPTAMSTVLSNWLFFNDNLKVAITRPRIHSQLFPPTVLYEKTLPPEIVTSLTKNFGHVSITNDTYDVSGQPDAILGVVQAIVRTPAGKLAAECDYRK 1769
+ + AVAAD CS++G+D LR GG+A DA + C ++N+HS G+GGG FL Y+ T KA N RE P + N + G +V VPG +RG E HQ +G+L W L++P I LA +GF + L A+ +K I + L E++ D L++G+ L +LA TY +A +GA+ FY G + QIV D++ GG ++ EDL Y+ E P++I L + +Y SAP SG LAL L +++ + + ++ ++P + YH+ VEAF+++YA + L D KF + + A+ AQ DD ++ + +Y+P + + D GT H+ + GSAVS TS+IN YFGSK+RS V G ++NNE+ DFS EF P N + PGK+P+S PTI V ++ +V+ V GAAGG I TA + + L+F ++K A+ PR+H+QL P E+ + + +L H I + + VVQAIVRT AG AA D RK
Sbjct: 38 YTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCRDRKVLREGERLTLPQLADTYETLAIEGAQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNFS-RESVESPEQKGLTYHRIVEAFRFAYAKRTLLGDPKFVDVTEVVRNMTSEFFAAQLRAQISDDTTHPISYYKP--EFYTPDDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSGILFNNEMDDFSSPSITNEFGVPPSPANFIQ----PGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVERNIDQAVTAALETRHHHTQIAS----------TFIAVVQAIVRT-AGGWAAASDSRK 562 The following BLAST results are available for this feature:
BLAST of TCONS_00002946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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