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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002945 ID=TCONS_00002945|Name=TCONS_00002945|organism=Clytia hemisphaerica|type=transcript|length=1012bp
AAATGATAAGATATCAAAGACAGAAATATTAAAAGTTTCAAACAGGAAAA
TTAGcaactttaaaaatttattgGAAAATTTATCATTGGTAAATTTTTAG
TGGGAATCTCTTATTGGCCTGACGCGAAACACTTTTGACCAGgtaaaaat
gaaagttcaaTTTGATACACGTGCCGAAGCCTTCCAAATCTTATCTTTGG
AAATTGACAAGTTATTGAAACATGCTAAACCTTGTCACGTGATGAACCAA
ACAGCAGGTATCCGATTggtgaaaaatgatgaagaaaTCCAAATGCAAAA
CACATATCCAAATGTATTCCATTGTGCACGGCGTATCTCTTTATGTGCAC
GTCGAGTGACAATGCCGGTTGCGTGTGGAATAAATATAAGACGGTTTTGG
CTTGGTAAAATGTGCCGTGGCCGAAATTACGAAGATGTTGATAATTTCTT
TTATAAAGGACAATCCAAACAGTTTTGCCTTGAAGAAGATGCAAATGATT
TCTTAAGCATATTTGATCGCGCATGTGCGGTAGATTTGGTTCAAGAAATA
TTGTTGAGTCATCACCAAGATGGTAGCTTTGACCACACGATAAGAATTAT
CATATTTCGGGATGAGTTGAAAGAAATTATAAATATCAGGACCCGAATTA
ACGGAACTCTTATTGAGAAAGAAGACAATGTAGTGGCTGACACAGAAATT
ACTTCGGTCatgaaaatagtcaaaattcGAATTCCATTGTTTAAGAAACC
GTCTTATTGGTCCAACGAGATGAATACATTCGTTTTAATTGGTTTAGAGT
CGTCTatgtaaacaaataaaaacgtAAAATCACCCACAGAACTGATGGGA
TCAATACTTCACTGGAAAATTtgtttctatccccattgggtttTTTGATA
TAGATTTTTAATCGAATTACTGGAAAAtgttccaccgggcctgtgAGACA
GAAGCAGTGAAATTCATTAAAcgtttattcaaaaatatttgtaaattaGC
TATATATGTAAC Run BLAST on NCBI protein sequence of TCONS_00002945-protein >TCONS_00002945-protein ID=TCONS_00002945-protein|Name=TCONS_00002945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MKVQFDTRAEAFQILSLEIDKLLKHAKPCHVMNQTAGIRLVKNDEEIQMQ
NTYPNVFHCARRISLCARRVTMPVACGINIRRFWLGKMCRGRNYEDVDNF
FYKGQSKQFCLEEDANDFLSIFDRACAVDLVQEILLSHHQDGSFDHTIRI
IIFRDELKEIINIRTRINGTLIEKEDNVVADTEITSVMKIVKIRIPLFKK
PSYWSNEMNTFVLIGLESSM Run BLAST on NCBI transcript from alignment at sc0000024:114249..115757+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002945 ID=TCONS_00002945|Name=TCONS_00002945|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at sc0000024:114249..115757+ (Clytia hemisphaerica)
AAATGATAAGATATCAAAGACAGAAATATTAAAAGTTTCAAACAGGAAAA
TTAGcaactttaaaaatttattgGAAAATTTATCATTGGTAAATTTTTAG
TGGGAATCTCTTATTGGCCTGACGCGAAACACTTTTGACCAGGTAAGCAA
TTTATTGCgtggaatttgaatttttcttcttatttATAGATTTTAGCCCT
TTCCAATCAAGGTATTTTATTCTTATGATATTCAACAAAAATACCTTTGA
GGTAACGCTACACTGAAAGATTCTACAGATGGCTTCGATGCAATTTAGAT
TACGTTGCAAGCAcctgaaaaattgtaaaatgcaGTCACATCAAATCTTC
TACAATTACTCTGAAATGCAATAAGAATATTATGACGAAACAAATTGTAA
GTCCTTGCTGCCCGGGGAGttgatttttgaactttgactCGGACATACCC
GTTACCTCGCAAACCTACAATCAGGGTCGAAATacattgagattttagtg
tattttaacgatGGTCTAATTTATAACGAAGTAAGTTCCAACTATTGGCA
AGGATTGGTATTCGAAatctctttgtttgtttgtaacaaaaatgTATAAG
TGGAGTTTTACTATGGATAATTTATACTGCtcattttaggtaaaaatgaa
agttcaaTTTGATACACGTGCCGAAGCCTTCCAAATCTTATCTTTGGAAA
TTGACAAGTTATTGAAACATGCTAAACCTTGTCACGTGATGAACCAAACA
GCAGGTATCCGATTggtgaaaaatgatgaagaaaTCCAAATGCAAAACAC
ATATCCAAATGTATTCCATTGTGCACGGCGTATCTCTTTATGTGCACGTC
GAGTGACAATGCCGGTTGCGTGTGGAATAAATATAAGACGGTTTTGGCTT
GGTAAAATGTGCCGTGGCCGAAATTACGAAGATGTTGATAATTTCTTTTA
TAAAGGACAATCCAAACAGTTTTGCCTTGAAGAAGATGCAAATGATTTCT
TAAGCATATTTGATCGCGCATGTGCGGTAGATTTGGTTCAAGAAATATTG
TTGAGTCATCACCAAGATGGTAGCTTTGACCACACGATAAGAATTATCAT
ATTTCGGGATGAGTTGAAAGAAATTATAAATATCAGGACCCGAATTAACG
GAACTCTTATTGAGAAAGAAGACAATGTAGTGGCTGACACAGAAATTACT
TCGGTCatgaaaatagtcaaaattcGAATTCCATTGTTTAAGAAACCGTC
TTATTGGTCCAACGAGATGAATACATTCGTTTTAATTGGTTTAGAGTCGT
CTatgtaaacaaataaaaacgtAAAATCACCCACAGAACTGATGGGATCA
ATACTTCACTGGAAAATTtgtttctatccccattgggtttTTTGATATAG
ATTTTTAATCGAATTACTGGAAAAtgttccaccgggcctgtgAGACAGAA
GCAGTGAAATTCATTAAAcgtttattcaaaaatatttgtaaattaGCTAT
ATATGTAAC Coding sequence (CDS) from alignment at sc0000024:114249..115757+ >TCONS_00002945 ID=TCONS_00002945|Name=TCONS_00002945|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000024:114249..115757+ (Clytia hemisphaerica)
atgaaagttcaaTTTGATACACGTGCCGAAGCCTTCCAAATCTTATCTTT
GGAAATTGACAAGTTATTGAAACATGCTAAACCTTGTCACGTGATGAACC
AAACAGCAGGTATCCGATTggtgaaaaatgatgaagaaaTCCAAATGCAA
AACACATATCCAAATGTATTCCATTGTGCACGGCGTATCTCTTTATGTGC
ACGTCGAGTGACAATGCCGGTTGCGTGTGGAATAAATATAAGACGGTTTT
GGCTTGGTAAAATGTGCCGTGGCCGAAATTACGAAGATGTTGATAATTTC
TTTTATAAAGGACAATCCAAACAGTTTTGCCTTGAAGAAGATGCAAATGA
TTTCTTAAGCATATTTGATCGCGCATGTGCGGTAGATTTGGTTCAAGAAA
TATTGTTGAGTCATCACCAAGATGGTAGCTTTGACCACACGATAAGAATT
ATCATATTTCGGGATGAGTTGAAAGAAATTATAAATATCAGGACCCGAAT
TAACGGAACTCTTATTGAGAAAGAAGACAATGTAGTGGCTGACACAGAAA
TTACTTCGGTCatgaaaatagtcaaaattcGAATTCCATTGTTTAAGAAA
CCGTCTTATTGGTCCAACGAGATGAATACATTCGTTTTAATTGGTTTAGA
GTCGTCTatgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002945-exon-sc0000024-1491911889:114249..114390 | TCONS_00002945-exon-sc0000024-1491911889:114249..114390 | Clytia hemisphaerica | exon |
| TCONS_00002945-exon-sc0000024-1510915933:114249..114390 | TCONS_00002945-exon-sc0000024-1510915933:114249..114390 | Clytia hemisphaerica | exon |
| TCONS_00002945-exon-sc0000024-1575043694:114249..114390 | TCONS_00002945-exon-sc0000024-1575043694:114249..114390 | Clytia hemisphaerica | exon |
| TCONS_00002945-exon-sc0000024-1491911889:114888..115757 | TCONS_00002945-exon-sc0000024-1491911889:114888..115757 | Clytia hemisphaerica | exon |
| TCONS_00002945-exon-sc0000024-1510915933:114888..115757 | TCONS_00002945-exon-sc0000024-1510915933:114888..115757 | Clytia hemisphaerica | exon |
| TCONS_00002945-exon-sc0000024-1575043694:114888..115757 | TCONS_00002945-exon-sc0000024-1575043694:114888..115757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000024 | supercontig | sc0000024:114249..115757 + |
Blast
The following BLAST results are available for this feature:
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