TCONS_00002941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002941
Unique NameTCONS_00002941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002941 ID=TCONS_00002941|Name=TCONS_00002941|organism=Clytia hemisphaerica|type=transcript|length=299bp
AAAACATCAATATGGGAAGATTTGTGTTATCAGTttctttgaccattttg
ttggtTAGCATTGTACTTTGcgcaaacaacaacaacaacaataataacaa
taataacaataataacaataacaacaacaacagcaacaacaacaacaatc
aaaataataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAAC
CCTTGGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTG
CTGTGAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGG
Run BLAST on NCBI

protein sequence of TCONS_00002941-protein

>TCONS_00002941-protein ID=TCONS_00002941-protein|Name=TCONS_00002941-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
NINMGRFVLSVSLTILLVSIVLCANNNNNNNNNNNNNNNNNNNSNNNNNQ
NNNNQNNQNNCPGTNNPWEYCNGIRYDPVSEWCCEGRLNNKRAFYRCCG
Run BLAST on NCBI

transcript from alignment at sc0000024:1..806+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002941 ID=TCONS_00002941|Name=TCONS_00002941|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0000024:1..806+ (Clytia hemisphaerica)
AAAACATCAATATGGGAAGATTTGTGTTATCAGTttctttgaccattttg
ttggtTAGCATTGTACTTTGcgcaaacaacaacaacaacaataataacaa
taataacaataataacaataacaacaacaacagcaacaacaacaacaatc
aaaataataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAAC
CCTTGGGAATATTGTAAGTATGTTCTATATGCTACCCAGGGGAGGGGGCA
CTAGGATTGGCCGATGAGGAGTATGTCTGGACGGGACCTCCGgaaaccaa
cccttagagagattgttttcttctgaaaaggtgacccttagagggacttt
GAAAACCTTAGAAAATTTCCTTTcatctttgaaaaaagtcatacccttag
agagacctttttacaactttttcattttttcaaatcaaaagaatttccta
aaaattgtgatttttccGATCCTAAGGTCTAAGAGTcttttgaaaggtga
aaaactgacccttaccgcccgcacatacccagcacccatttttgcccaAG
TACCCCCAACCCCGCTAGTAATTTATTTAGTATTTAAACCTAAAAGATTT
CTCTGACTCTTTCTCCCCAAATATAGCAGCATAGATTAATTTTTATATCT
CNCTTTGACTCTTTCTCCCCAAATATAGCAGCATAGATTAATTTTTATAT
CTTCCACAATCTTCATTCAGGCAATGGAATCCGTTATGACCCTGTCTCAG
AATGGTGCTGTGAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGC
TGTGGG

Coding sequence (CDS) from alignment at sc0000024:1..806+

>TCONS_00002941 ID=TCONS_00002941|Name=TCONS_00002941|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000024:1..806+ (Clytia hemisphaerica)
AACATCAATATGGGAAGATTTGTGTTATCAGTttctttgaccattttgtt
ggtTAGCATTGTACTTTGcgcaaacaacaacaacaacaataataacaata
ataacaataataacaataacaacaacaacagcaacaacaacaacaatcaa
aataataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAACCC
TTGGGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCT
GTGAAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGGAAC
ATCAATATGGGAAGATTTGTGTTATCAGTttctttgaccattttgttggt
TAGCATTGTACTTTGcgcaaacaacaacaacaacaataataacaataata
acaataataacaataacaacaacaacagcaacaacaacaacaatcaaaat
aataacaatcaaaacaaccaaaacaattGTCCAGGAACAAACAACCCTTG
GGAATATTGCAATGGAATCCGTTATGACCCTGTCTCAGAATGGTGCTGTG
AAGGAAGATTAAACAACAAACGTGCTTTTTATCGATGCTGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001614XLOC_001614Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002941-proteinTCONS_00002941-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002941-exon-sc0000024-1491911889:1..213TCONS_00002941-exon-sc0000024-1491911889:1..213Clytia hemisphaericaexon
TCONS_00002941-exon-sc0000024-1510915933:1..213TCONS_00002941-exon-sc0000024-1510915933:1..213Clytia hemisphaericaexon
TCONS_00002941-exon-sc0000024-1575043694:1..213TCONS_00002941-exon-sc0000024-1575043694:1..213Clytia hemisphaericaexon
TCONS_00002941-exon-sc0000024-1491911889:721..806TCONS_00002941-exon-sc0000024-1491911889:721..806Clytia hemisphaericaexon
TCONS_00002941-exon-sc0000024-1510915933:721..806TCONS_00002941-exon-sc0000024-1510915933:721..806Clytia hemisphaericaexon
TCONS_00002941-exon-sc0000024-1575043694:721..806TCONS_00002941-exon-sc0000024-1575043694:721..806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000024supercontigsc0000024:1..806 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.345823	0	0	0.229949	0	24.2275	20.6247	0	0	0.701262	0	0	3.31279	33.6851	37.5761	17.6669	16.8078	57.426	71.4632	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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