|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002937 ID=TCONS_00002937|Name=TCONS_00002937|organism=Clytia hemisphaerica|type=transcript|length=1266bp
GTTGTTTTTTAGCTTTTCGAGTTTATTAgggttaattttattttttctgc
acgaatttgtcaagtttttaaaatgttctttatctTTAGTAACACGGCAA
AAGTCTCAATCTCAACAACCATCTCAAATTGCCACGTGTTTCTTTTGCAA
CGAACCGTCAAACACAGAAAAAGGGGCGTTGCATCTGGCTTAATCATATA
GACTTGACCATCGTGTTCGAACCAGTACAAAGCTACTCGAAGATTCCATT
CTCTACGCAAAGCTTCAAAATGGTGATATGATTGCTCATGATGCCATGTA
CCATCGAAACTGATCTGTATAGAAAGAGAACAAATAAACAACTTGGTGGT
TGTTATTCAGAACTTCATCACAAGCTATGTGGAATCGCATTCGCTGAAGT
TGTAACTTTCATAGAAGAAACTCATCTGACATCGACCGATGATGAAATAC
CCACATTCAAGTTGTCTGATCTGGTAAAGCTTTATACTATACAGCTTGCC
AAGCTTGGTGTAACTGTTGAAACAAGGGAGCACAGCACTCGCTTCAAGGA
AAGGCTTCTTGCTCAATTTGAAGGCTTGACAGCTTATAATAGCAGGAGTC
ATTATAGCGAAGATCAAAAATGGTTTGACAATCCTAGCGAATCATCATGG
GCTGTCNAGCACAGCACTCGCTTCAAGGAAAGGTTTCTTGCTCAATTTGA
AGGCTTGACAGCTTATAATAGCAGGAGTCATTATAGCGAAGATCAAAAAT
GGCTTGACAATCCTAGCAAATCATCATGGGCTGTTTATCATTCAGTAAAT
CAAGAGCCACCTACATGCAAAGATACGTCCGCTATGCTTCCGATTCTACG
AGACGACTCCAAGTCACCAGCTACAATCAAGCATTTGCTGAACATTTTAA
TGAAGTCAATCAATTTCTTAAACCCTAGACAAGCAGCAGTGATTGGTCTT
GACCAGCCTTTGTACGCGATCGCAAAGAAAATCCAGTGGCAGCATCCTTC
GCTATATGGTGAAAATAAACTGGTATTGATGCTTGTGGCGTTACACATCG
AGATGGTCATGATGGGATGTATAAGTGATTTTCTAGAGAATAGTGGCTGG
ACAGAAGCTCTTTCAAGTAGTGGAGTGACATCATCAGGAAATGAAGCAAT
GTTATCAGGTCATGGTGTCGCTAAAATAAAGTATTGTCACCAAGTAACAG
CAATGTCATTAAATCATCTGATGAAAGCGACATGTCATTACAAGGCCGAA
AGAAGATTGTTGTTCG Run BLAST on NCBI protein sequence of TCONS_00002937-protein >TCONS_00002937-protein ID=TCONS_00002937-protein|Name=TCONS_00002937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MMPCTIETDLYRKRTNKQLGGCYSELHHKLCGIAFAEVVTFIEETHLTST
DDEIPTFKLSDLVKLYTIQLAKLGVTVETREHSTRFKERLLAQFEGLTAY
NSRSHYSEDQKWFDNPSESSWAVXHSTRFKERFLAQFEGLTAYNSRSHYS
EDQKWLDNPSKSSWAVYHSVNQEPPTCKDTSAMLPILRDDSKSPATIKHL
LNILMKSINFLNPRQAAVIGLDQPLYAIAKKIQWQHPSLYGENKLVLMLV
ALHIEMVMMGCISDFLENSGWTEALSSSGVTSSGNEAMLSGHGVAKIKYC
HQVTAMSLNHLMKATCHYKAERRLLF Run BLAST on NCBI transcript from alignment at sc0000023:852996..854261 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002937 ID=TCONS_00002937|Name=TCONS_00002937|organism=Clytia hemisphaerica|type=transcript|length=1266bp|location=Sequence derived from alignment at sc0000023:852996..854261 (Clytia hemisphaerica)
CGAACAACAATCTTCTTTCGGCCTTGTAATGACATGTCGCTTTCATCAGA
TGATTTAATGACATTGCTGTTACTTGGTGACAATACTTTATTTTAGCGAC
ACCATGACCTGATAACATTGCTTCATTTCCTGATGATGTCACTCCACTAC
TTGAAAGAGCTTCTGTCCAGCCACTATTCTCTAGAAAATCACTTATACAT
CCCATCATGACCATCTCGATGTGTAACGCCACAAGCATCAATACCAGTTT
ATTTTCACCATATAGCGAAGGATGCTGCCACTGGATTTTCTTTGCGATCG
CGTACAAAGGCTGGTCAAGACCAATCACTGCTGCTTGTCTAGGGTTTAAG
AAATTGATTGACTTCATTAAAATGTTCAGCAAATGCTTGATTGTAGCTGG
TGACTTGGAGTCGTCTCGTAGAATCGGAAGCATAGCGGACGTATCTTTGC
ATGTAGGTGGCTCTTGATTTACTGAATGATAAACAGCCCATGATGATTTG
CTAGGATTGTCAAGCCATTTTTGATCTTCGCTATAATGACTCCTGCTATT
ATAAGCTGTCAAGCCTTCAAATTGAGCAAGAAACCTTTCCTTGAAGCGAG
TGCTGTGCTNGACAGCCCATGATGATTCGCTAGGATTGTCAAACCATTTT
TGATCTTCGCTATAATGACTCCTGCTATTATAAGCTGTCAAGCCTTCAAA
TTGAGCAAGAAGCCTTTCCTTGAAGCGAGTGCTGTGCTCCCTTGTTTCAA
CAGTTACACCAAGCTTGGCAAGCTGTATAGTATAAAGCTTTACCAGATCA
GACAACTTGAATGTGGGTATTTCATCATCGGTCGATGTCAGATGAGTTTC
TTCTATGAAAGTTACAACTTCAGCGAATGCGATTCCACATAGCTTGTGAT
GAAGTTCTGAATAACAACCACCAAGTTGTTTATTTGTTCTCTTTCTATAC
AGATCAGTTTCGATGGTACATGGCATCATGAGCAATCATATCACCATTTT
GAAGCTTTGCGTAGAGAATGGAATCTTCGAGTAGCTTTGTACTGGTTCGA
ACACGATGGTCAAGTCTATATGATTAAGCCAGATGCAACGCCCCTTTTTC
TGTGTTTGACGGTTCGTTGCAAAAGAAACACGTGGCAATTTGAGATGGTT
GTTGAGATTGAGACTTTTGCCGTGTTACTAAagataaagaacattttaaa
aacttgacaaattcgtgcagaaaaaataaaattaacccTAATAAACTCGA
AAAGCTAAAAAACAAC Coding sequence (CDS) from alignment at sc0000023:852996..854261 >TCONS_00002937 ID=TCONS_00002937|Name=TCONS_00002937|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000023:852996..854261 (Clytia hemisphaerica)
GAACAACAATCTTCTTTCGGCCTTGTAATGACATGTCGCTTTCATCAGAT
GATTTAATGACATTGCTGTTACTTGGTGACAATACTTTATTTTAGCGACA
CCATGACCTGATAACATTGCTTCATTTCCTGATGATGTCACTCCACTACT
TGAAAGAGCTTCTGTCCAGCCACTATTCTCTAGAAAATCACTTATACATC
CCATCATGACCATCTCGATGTGTAACGCCACAAGCATCAATACCAGTTTA
TTTTCACCATATAGCGAAGGATGCTGCCACTGGATTTTCTTTGCGATCGC
GTACAAAGGCTGGTCAAGACCAATCACTGCTGCTTGTCTAGGGTTTAAGA
AATTGATTGACTTCATTAAAATGTTCAGCAAATGCTTGATTGTAGCTGGT
GACTTGGAGTCGTCTCGTAGAATCGGAAGCATAGCGGACGTATCTTTGCA
TGTAGGTGGCTCTTGATTTACTGAATGATAAACAGCCCATGATGATTTGC
TAGGATTGTCAAGCCATTTTTGATCTTCGCTATAATGACTCCTGCTATTA
TAAGCTGTCAAGCCTTCAAATTGAGCAAGAAACCTTTCCTTGAAGCGAGT
GCTGTGCTNGACAGCCCATGATGATTCGCTAGGATTGTCAAACCATTTTT
GATCTTCGCTATAATGACTCCTGCTATTATAAGCTGTCAAGCCTTCAAAT
TGAGCAAGAAGCCTTTCCTTGAAGCGAGTGCTGTGCTCCCTTGTTTCAAC
AGTTACACCAAGCTTGGCAAGCTGTATAGTATAAAGCTTTACCAGATCAG
ACAACTTGAATGTGGGTATTTCATCATCGGTCGATGTCAGATGAGTTTCT
TCTATGAAAGTTACAACTTCAGCGAATGCGATTCCACATAGCTTGTGATG
AAGTTCTGAATAACAACCACCAAGTTGTTTATTTGTTCTCTTTCTATACA
GATCAGTTTCGATGGTACATGGCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002937-exon-sc0000023-1491911889:852996..854261 | TCONS_00002937-exon-sc0000023-1491911889:852996..854261 | Clytia hemisphaerica | exon |
| TCONS_00002937-exon-sc0000023-1510915933:852996..854261 | TCONS_00002937-exon-sc0000023-1510915933:852996..854261 | Clytia hemisphaerica | exon |
| TCONS_00002937-exon-sc0000023-1575043694:852996..854261 | TCONS_00002937-exon-sc0000023-1575043694:852996..854261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:852996..854261 . |
Blast
The following BLAST results are available for this feature:
|
