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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002935 ID=TCONS_00002935|Name=TCONS_00002935|organism=Clytia hemisphaerica|type=transcript|length=1201bp
AGCTCAAATAGATTTATTCAAGATTCTCGGCATACGAAACTTCATATGGA
GTTACATTGAAACTCCAATGCTCAGCTTTGGCGTTCTTGGCAATCTACTC
ATCATTGTATACTTCATACAGTTGAATTGGAATAACTTAAAAACAATGAG
TTCTTATCATTTCCTACTAATCAATTTAGCGTTATCCGACGCCCTATCTT
GTGGCGGCACCGCCTACTCGCTTTATCACTTTATGAAACCTTCTTGGGAA
ATGGGTACCTTTGGATGTGTATGCGTGGTGAATGTATTCATTAACATATG
TCCAATGGCTTCTTGTTTGTTGTTAATTACAACATCTTATGCTCGATATC
GCCGTATTGTCACACCGTTCAAACGTAAGCTCAATAAAATTCAGTACAGC
ATTATCTGTCTCATAATTTGGATCCTATCGTCCCTTACCTACCTTCATTA
TTTTCTCAATAGAAAGGTCGTTGAAATTAATAATGGTACTCTCCAATGTA
TGTATTTTGGCGCTGAATTCGTTAACCAGTTGTTTGTCTTTGCATGGGAT
ATTCTCATTGCAGTTGCTATAAtggtttatttttacataaaaatcAAGAA
GAGACTTGATTGTGAGGAAAATTCAAACCATACCCATTTAAATGATTCGA
GCAGGCAACGAAATCAACTTATTTTGAGAACGTTGAAAGCTCTCATAGTT
GTTTACACCATATTTGCATATCCAGGAAGAATCTTTGCTATGATTGGAAA
CACCGTATTCTATTATGGTTCAGTAGAGAATCCACCAAACCAGGAGATGA
TGAATGCTGCTGTTATCCTTGTTCAAATTGTTGCAATGATTTTATATTAt
tcaaataacattttcaacgTATTTGTATATTACAAAGTAATGCCGGAGTT
TCGAGCATTCGTGTTGAATGTGTTGACATTTGggttttataaaaaacata
acGAGATTCATCCAGCAAGCGAGACAAATCACACCAATGATGGTGAGCCA
AGTTGAATAAATGACAAACTCGTACCCAGGCCATCATTGTGTTGCATTTT
TAAAGATCTTTAATGCTCTCAATTGTACAATGTCCTCGTGTCGTGGATTC
GCGTCAGTATGAAATCAGATACAGTTATGGCTATatctaattcgattttt
atttgattttctcGGTGTAATGGAGCGTATTGAATAGTAGATCGTCGTTT
A Run BLAST on NCBI protein sequence of TCONS_00002935-protein >TCONS_00002935-protein ID=TCONS_00002935-protein|Name=TCONS_00002935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
AQIDLFKILGIRNFIWSYIETPMLSFGVLGNLLIIVYFIQLNWNNLKTMS
SYHFLLINLALSDALSCGGTAYSLYHFMKPSWEMGTFGCVCVVNVFINIC
PMASCLLLITTSYARYRRIVTPFKRKLNKIQYSIICLIIWILSSLTYLHY
FLNRKVVEINNGTLQCMYFGAEFVNQLFVFAWDILIAVAIMVYFYIKIKK
RLDCEENSNHTHLNDSSRQRNQLILRTLKALIVVYTIFAYPGRIFAMIGN
TVFYYGSVENPPNQEMMNAAVILVQIVAMILYYSNNIFNVFVYYKVMPEF
RAFVLNVLTFGFYKKHNEIHPASETNHTNDGEPS Run BLAST on NCBI transcript from alignment at sc0000023:844571..845771 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002935 ID=TCONS_00002935|Name=TCONS_00002935|organism=Clytia hemisphaerica|type=transcript|length=1201bp|location=Sequence derived from alignment at sc0000023:844571..845771 (Clytia hemisphaerica)
TAAACGACGATCTACTATTCAATACGCTCCATTACACCgagaaaatcaaa
taaaaatcgaattagatATAGCCATAACTGTATCTGATTTCATACTGACG
CGAATCCACGACACGAGGACATTGTACAATTGAGAGCATTAAAGATCTTT
AAAAATGCAACACAATGATGGCCTGGGTACGAGTTTGTCATTTATTCAAC
TTGGCTCACCATCATTGGTGTGATTTGTCTCGCTTGCTGGATGAATCTCg
ttatgttttttataaaaccCAAATGTCAACACATTCAACACGAATGCTCG
AAACTCCGGCATTACTTTGTAATATACAAATAcgttgaaaatgttatttg
aaTAATATAAAATCATTGCAACAATTTGAACAAGGATAACAGCAGCATTC
ATCATCTCCTGGTTTGGTGGATTCTCTACTGAACCATAATAGAATACGGT
GTTTCCAATCATAGCAAAGATTCTTCCTGGATATGCAAATATGGTGTAAA
CAACTATGAGAGCTTTCAACGTTCTCAAAATAAGTTGATTTCGTTGCCTG
CTCGAATCATTTAAATGGGTATGGTTTGAATTTTCCTCACAATCAAGTCT
CTTCTTgatttttatgtaaaaataaaccaTTATAGCAACTGCAATGAGAA
TATCCCATGCAAAGACAAACAACTGGTTAACGAATTCAGCGCCAAAATAC
ATACATTGGAGAGTACCATTATTAATTTCAACGACCTTTCTATTGAGAAA
ATAATGAAGGTAGGTAAGGGACGATAGGATCCAAATTATGAGACAGATAA
TGCTGTACTGAATTTTATTGAGCTTACGTTTGAACGGTGTGACAATACGG
CGATATCGAGCATAAGATGTTGTAATTAACAACAAACAAGAAGCCATTGG
ACATATGTTAATGAATACATTCACCACGCATACACATCCAAAGGTACCCA
TTTCCCAAGAAGGTTTCATAAAGTGATAAAGCGAGTAGGCGGTGCCGCCA
CAAGATAGGGCGTCGGATAACGCTAAATTGATTAGTAGGAAATGATAAGA
ACTCATTGTTTTTAAGTTATTCCAATTCAACTGTATGAAGTATACAATGA
TGAGTAGATTGCCAAGAACGCCAAAGCTGAGCATTGGAGTTTCAATGTAA
CTCCATATGAAGTTTCGTATGCCGAGAATCTTGAATAAATCTATTTGAGC
T Coding sequence (CDS) from alignment at sc0000023:844571..845771 >TCONS_00002935 ID=TCONS_00002935|Name=TCONS_00002935|organism=Clytia hemisphaerica|type=CDS|length=1005bp|location=Sequence derived from alignment at sc0000023:844571..845771 (Clytia hemisphaerica)
TCAACTTGGCTCACCATCATTGGTGTGATTTGTCTCGCTTGCTGGATGAA
TCTCgttatgttttttataaaaccCAAATGTCAACACATTCAACACGAAT
GCTCGAAACTCCGGCATTACTTTGTAATATACAAATAcgttgaaaatgtt
atttgaaTAATATAAAATCATTGCAACAATTTGAACAAGGATAACAGCAG
CATTCATCATCTCCTGGTTTGGTGGATTCTCTACTGAACCATAATAGAAT
ACGGTGTTTCCAATCATAGCAAAGATTCTTCCTGGATATGCAAATATGGT
GTAAACAACTATGAGAGCTTTCAACGTTCTCAAAATAAGTTGATTTCGTT
GCCTGCTCGAATCATTTAAATGGGTATGGTTTGAATTTTCCTCACAATCA
AGTCTCTTCTTgatttttatgtaaaaataaaccaTTATAGCAACTGCAAT
GAGAATATCCCATGCAAAGACAAACAACTGGTTAACGAATTCAGCGCCAA
AATACATACATTGGAGAGTACCATTATTAATTTCAACGACCTTTCTATTG
AGAAAATAATGAAGGTAGGTAAGGGACGATAGGATCCAAATTATGAGACA
GATAATGCTGTACTGAATTTTATTGAGCTTACGTTTGAACGGTGTGACAA
TACGGCGATATCGAGCATAAGATGTTGTAATTAACAACAAACAAGAAGCC
ATTGGACATATGTTAATGAATACATTCACCACGCATACACATCCAAAGGT
ACCCATTTCCCAAGAAGGTTTCATAAAGTGATAAAGCGAGTAGGCGGTGC
CGCCACAAGATAGGGCGTCGGATAACGCTAAATTGATTAGTAGGAAATGA
TAAGAACTCATTGTTTTTAAGTTATTCCAATTCAACTGTATGAAGTATAC
AATGATGAGTAGATTGCCAAGAACGCCAAAGCTGAGCATTGGAGTTTCAA
TGTAACTCCATATGAAGTTTCGTATGCCGAGAATCTTGAATAAATCTATT
TGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002935-exon-sc0000023-1491911889:844571..845771 | TCONS_00002935-exon-sc0000023-1491911889:844571..845771 | Clytia hemisphaerica | exon |
| TCONS_00002935-exon-sc0000023-1510915933:844571..845771 | TCONS_00002935-exon-sc0000023-1510915933:844571..845771 | Clytia hemisphaerica | exon |
| TCONS_00002935-exon-sc0000023-1575043694:844571..845771 | TCONS_00002935-exon-sc0000023-1575043694:844571..845771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:844571..845771 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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