TCONS_00002934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002934
Unique NameTCONS_00002934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002934 ID=TCONS_00002934|Name=TCONS_00002934|organism=Clytia hemisphaerica|type=transcript|length=355bp
AGCTTAATAGAAACGTAAATTTGAATGACTGGAGTCTTTAATATTCTATA
CGTTTAATCTTAAAAAACTGTCGATCCCAAGGCGAATTTTGGATGTTATT
TGATGAGTTTAAGCCCTGGTCTCGGGTGTCAGAAAAGATTGCGTAAGGGA
GATTAGTCGAAGTTGATTTTAAATAACGAATGCGACAAGTTGGGCAGAAG
TTATGAATGAATCTTTTAAATCTCGATGTATATGCTCCATGGTGTTCGTT
AGGAGCTAGGcgttcaaagcaaaaagaaagaaacgatATAATGGaacaat
aaaactaaaaatgtctcaaaattaaaattaaaattaaaatgtatCAACAT
AAAAT
Run BLAST on NCBI

transcript from alignment at sc0000023:843941..844295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002934 ID=TCONS_00002934|Name=TCONS_00002934|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000023:843941..844295 (Clytia hemisphaerica)
ATTTTATGTTGatacattttaattttaattttaattttgagacattttta
gttttattgttCCATTATatcgtttctttctttttgctttgaacgCCTAG
CTCCTAACGAACACCATGGAGCATATACATCGAGATTTAAAAGATTCATT
CATAACTTCTGCCCAACTTGTCGCATTCGTTATTTAAAATCAACTTCGAC
TAATCTCCCTTACGCAATCTTTTCTGACACCCGAGACCAGGGCTTAAACT
CATCAAATAACATCCAAAATTCGCCTTGGGATCGACAGTTTTTTAAGATT
AAACGTATAGAATATTAAAGACTCCAGTCATTCAAATTTACGTTTCTATT
AAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001607XLOC_001607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002934-exon-sc0000023-1491911889:843941..844295TCONS_00002934-exon-sc0000023-1491911889:843941..844295Clytia hemisphaericaexon
TCONS_00002934-exon-sc0000023-1510915933:843941..844295TCONS_00002934-exon-sc0000023-1510915933:843941..844295Clytia hemisphaericaexon
TCONS_00002934-exon-sc0000023-1575043694:843941..844295TCONS_00002934-exon-sc0000023-1575043694:843941..844295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:843941..844295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.16161	0	0	0	0	0	0	0	0.704833	0	0.278617	0.506606	0.782689	1.86275	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top