TCONS_00002933 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002933
Unique NameTCONS_00002933
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002933 ID=TCONS_00002933|Name=TCONS_00002933|organism=Clytia hemisphaerica|type=transcript|length=558bp
TAGTTTTGAAACTTGGTTTACCAATAGAAAACCAATGTATCTTAAGAAAG
GTAAATCAAGATTGGATTTATTTGAGGGACAATGAAACCCTGGTTTTCAC
TAGCGATATAGAAAATCCAACAGCTGAAACGGTTGCTGAAATACAAATCG
ATTTGAAATGTCTCGCCATCAAAGAACATTTATCATTATTCCCTTTCGCT
GATGACAGGAAGAAATCTTTCGTATTTCCAAAAATTCGAGTTCTTCCGAA
AAGATACACCATAGAAAACAATGTTATTGAAATAGGTTGGGACGAGTTTC
AACGTCATCATGAGCTGTGCACACTTAAAGGATTTCAAGCAATGATTTGT
GACAAATTAAACACTGACCCGAATGAATCTTTACTGCTTTATGCAGAGAG
CTTTAGAGGAAGATCCTTTCTCAAGGATACTGAACATTGGTTAGAAACTC
TAAATGAATATGGGGTACGTCAACAGGTTTTAAACGTGTACATAGGAGTA
TTCAGTCAACCCTCAAATACAGTTCCACAACAGTCAAACACTTCAAACAT
TCTACGCC
Run BLAST on NCBI

protein sequence of TCONS_00002933-protein

>TCONS_00002933-protein ID=TCONS_00002933-protein|Name=TCONS_00002933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
VLKLGLPIENQCILRKVNQDWIYLRDNETLVFTSDIENPTAETVAEIQID
LKCLAIKEHLSLFPFADDRKKSFVFPKIRVLPKRYTIENNVIEIGWDEFQ
RHHELCTLKGFQAMICDKLNTDPNESLLLYAESFRGRSFLKDTEHWLETL
NEYGVRQQVLNVYIGVFSQPSNTVPQQSNTSNILR
Run BLAST on NCBI

transcript from alignment at sc0000023:800679..801236

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002933 ID=TCONS_00002933|Name=TCONS_00002933|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0000023:800679..801236 (Clytia hemisphaerica)
GGCGTAGAATGTTTGAAGTGTTTGACTGTTGTGGAACTGTATTTGAGGGT
TGACTGAATACTCCTATGTACACGTTTAAAACCTGTTGACGTACCCCATA
TTCATTTAGAGTTTCTAACCAATGTTCAGTATCCTTGAGAAAGGATCTTC
CTCTAAAGCTCTCTGCATAAAGCAGTAAAGATTCATTCGGGTCAGTGTTT
AATTTGTCACAAATCATTGCTTGAAATCCTTTAAGTGTGCACAGCTCATG
ATGACGTTGAAACTCGTCCCAACCTATTTCAATAACATTGTTTTCTATGG
TGTATCTTTTCGGAAGAACTCGAATTTTTGGAAATACGAAAGATTTCTTC
CTGTCATCAGCGAAAGGGAATAATGATAAATGTTCTTTGATGGCGAGACA
TTTCAAATCGATTTGTATTTCAGCAACCGTTTCAGCTGTTGGATTTTCTA
TATCGCTAGTGAAAACCAGGGTTTCATTGTCCCTCAAATAAATCCAATCT
TGATTTACCTTTCTTAAGATACATTGGTTTTCTATTGGTAAACCAAGTTT
CAAAACTA

Coding sequence (CDS) from alignment at sc0000023:800679..801236

>TCONS_00002933 ID=TCONS_00002933|Name=TCONS_00002933|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000023:800679..801236 (Clytia hemisphaerica)
GCGTAGAATGTTTGAAGTGTTTGACTGTTGTGGAACTGTATTTGAGGGTT
GACTGAATACTCCTATGTACACGTTTAAAACCTGTTGACGTACCCCATAT
TCATTTAGAGTTTCTAACCAATGTTCAGTATCCTTGAGAAAGGATCTTCC
TCTAAAGCTCTCTGCATAAAGCAGTAAAGATTCATTCGGGTCAGTGTTTA
ATTTGTCACAAATCATTGCTTGAAATCCTTTAAGTGTGCACAGCTCATGA
TGACGTTGAAACTCGTCCCAACCTATTTCAATAACATTGTTTTCTATGGT
GTATCTTTTCGGAAGAACTCGAATTTTTGGAAATACGAAAGATTTCTTCC
TGTCATCAGCGAAAGGGAATAATGATAAATGTTCTTTGATGGCGAGACAT
TTCAAATCGATTTGTATTTCAGCAACCGTTTCAGCTGTTGGATTTTCTAT
ATCGCTAGTGAAAACCAGGGTTTCATTGTCCCTCAAATAAATCCAATCTT
GATTTACCTTTCTTAAGATACATTGGTTTTCTATTGGTAAACCAAGTTTC
AAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001606XLOC_001606Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002933-proteinTCONS_00002933-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002933-exon-sc0000023-1491911889:800679..801236TCONS_00002933-exon-sc0000023-1491911889:800679..801236Clytia hemisphaericaexon
TCONS_00002933-exon-sc0000023-1510915933:800679..801236TCONS_00002933-exon-sc0000023-1510915933:800679..801236Clytia hemisphaericaexon
TCONS_00002933-exon-sc0000023-1575043694:800679..801236TCONS_00002933-exon-sc0000023-1575043694:800679..801236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:800679..801236 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101655	0	0.261584	0.308766	17.2039	12.039	7.217	8.27448	2.9892	7.63731	6.2279	3.7405	10.8703	4.81869	1.75868	4.37019	1.82344	3.16742	4.28031	9.00915	3.46181	2.94624	0.857969	1.681	1.58475	2.11984	5.66012	7.62477	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002933 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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