TCONS_00002928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002928
Unique NameTCONS_00002928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002928 ID=TCONS_00002928|Name=TCONS_00002928|organism=Clytia hemisphaerica|type=transcript|length=562bp
attattattttgaaactATAAATTATCGACCAAAGCATTTGACAATTCAA
TTCAAAGATATCACACTTTAAGGACTTTTCCTAGCCATATTAAGAGAAga
ctttttttagaatttttgaaaaaaataatagacCAGTATTTTTCATACTG
ATATCCACACAAAACATGAAATACAAAAAAGGGTTGTCTGGGAAAAAGTA
GAGTatcatttttctgaaaaagtttCGTCCAGGTTTAGTTACCGCCAAAA
GTTTTCTTTCCCTCTCAAATGTTTCCACCGccagaaaattattttgcgTG
TTTCTCATCGTGTGGatgttgttttgtgttttggtaATTGTTTGTTACTA
AAATGTGATAATGGCATACACACGTTCATGTACGCACTTAAATAAACGAC
AATTTGATTGGTAACATTTGTTTTTTGGAAATACCTTTTTGAAATAGAGT
AGTCTTTGTGTTATCTTTATAAGGTAAATTTAATTAAATTGAAATCATCA
AGCTTCTGCTTTATTCGCATTGTTGTTgaaatttctggattttttcattt
actcGATTCAAG
Run BLAST on NCBI

transcript from alignment at sc0000023:750520..751081

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002928 ID=TCONS_00002928|Name=TCONS_00002928|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0000023:750520..751081 (Clytia hemisphaerica)
CTTGAATCgagtaaatgaaaaaatccagaaatttcAACAACAATGCGAAT
AAAGCAGAAGCTTGATGATTTCAATTTAATTAAATTTACCTTATAAAGAT
AACACAAAGACTACTCTATTTCAAAAAGGTATTTCCAAAAAACAAATGTT
ACCAATCAAATTGTCGTTTATTTAAGTGCGTACATGAACGTGTGTATGCC
ATTATCACATTTTAGTAACAAACAATtaccaaaacacaaaacaacatCCA
CACGATGAGAAACAcgcaaaataattttctggCGGTGGAAACATTTGAGA
GGGAAAGAAAACTTTTGGCGGTAACTAAACCTGGACGaaactttttcaga
aaaatgatACTCTACTTTTTCCCAGACAACCCTTTTTTGTATTTCATGTT
TTGTGTGGATATCAGTATGAAAAATACTGgtctattatttttttcaaaaa
ttctaaaaaaagtcTTCTCTTAATATGGCTAGGAAAAGTCCTTAAAGTGT
GATATCTTTGAATTGAATTGTCAAATGCTTTGGTCGATAATTTATagttt
caaaataataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001601XLOC_001601Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002928-exon-sc0000023-1491911889:750520..751081TCONS_00002928-exon-sc0000023-1491911889:750520..751081Clytia hemisphaericaexon
TCONS_00002928-exon-sc0000023-1510915933:750520..751081TCONS_00002928-exon-sc0000023-1510915933:750520..751081Clytia hemisphaericaexon
TCONS_00002928-exon-sc0000023-1575043694:750520..751081TCONS_00002928-exon-sc0000023-1575043694:750520..751081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:750520..751081 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100504	0.490034	0	0.111331	0.271069	0.749709	0.516853	0.725807	0.423462	0.20981	0	0.200804	0.334209	0.0694158	0.171208	0.122488	0.150895	0	0.213675	0	0.680208	0.568768	0.115235	0.209531	0.647437	0.963037	0.275621	0	0.334653	0.227306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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