TCONS_00002921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002921
Unique NameTCONS_00002921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002921 ID=TCONS_00002921|Name=TCONS_00002921|organism=Clytia hemisphaerica|type=transcript|length=1115bp
GAGAATGATAACTCTGATATCTATAAATGGAGAGTTCGAGGGGACTCAAA
AAACGGATTCGACATCATCAAGGTCAAAATCAGATCCCAAACAAAGAAGA
CAGACACGAAGAATGTAGTATTCGCCAAGAATCTTACTCAAACGAAAACA
ATCGGAGAAGAGTAATTTAAGAAAACCATAACGTAAATCAAGTAGATGAT
GTTGAAATAAAGATCAACGAAATCAGGATCTTTTATTACAACGCCGACAC
GCTAACACCCGAGAAGAAGCGACAACTGGTGCTTGATGTAGAGAATCAAT
TGAAAGAGCTCAACCATAATAAGTCATTCGGTCCAGACGAAATACACCCT
AGGATACTAGCAGAATTATCTGACTATCTGTCTCTACCCTTGGCTGTAAT
CATGAACAATTCTTTAGTTGAAGGCTCATTACCACAAGATTGGAAGGTGG
CACATGTCACACCTATCTACAAAAACAAGGGACCTCAGAATTTGGCAGTC
AATTATCAACCTGTTAGTTTGACATCGGTAGTGTGCAAATTAATGGAATC
AATACTGAGGAAACACATCATGAAGCACCTTTCTGATCATAATCTTTTAT
CGAACAAACAACATGGCTTCATTAACAACCGTTCAACCGTGACACAGCTT
TTGTTACTTGTGTTACTTGTGTAGTTGTTTGAGCATCCTGCTTCAGGTAA
GGTTCTTGGTGAACCACGCCTCTGTGTGATCAATCTGTCGAGAGAAAAAG
AATCTCAGCAGATATTTTTCATGTCAAATATTGATTAGAATTGGCTCTCC
TGCACCCAGTATATCCATGGATCTGGGGTTCATCTGGGATAGACTTAAGG
TGTGTGTCCAGGGCTCTTTTGAATTTATCGATAGAAATGTTTTTGAGGTT
TCTGATGCTCTTTGGCATAGCATTAAAAAGTTTTGCACCTTGCACTGCAA
GCGTGCTGTctctaaattttgatgtttggttctTTGGAATTGACAGTGTA
CACATCCGGCGCAGCCAGGGGTTTTCAGTGGTTTTAATACCATTTACAGT
AGGTACAATCTTTTCCATCACCTTCCAGACATACATTATTCTGTAGCGTT
CTCTTTGCCTTTGAA
Run BLAST on NCBI

protein sequence of TCONS_00002921-protein

>TCONS_00002921-protein ID=TCONS_00002921-protein|Name=TCONS_00002921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
QRQRERYRIMYVWKVMEKIVPTVNGIKTTENPWLRRMCTLSIPKNQTSKF
RDSTLAVQGAKLFNAMPKSIRNLKNISIDKFKRALDTHLKSIPDEPQIHG
YTGCRRANSNQYLT
Run BLAST on NCBI

transcript from alignment at sc0000023:460486..461600

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002921 ID=TCONS_00002921|Name=TCONS_00002921|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0000023:460486..461600 (Clytia hemisphaerica)
TTCAAAGGCAAAGAGAACGCTACAGAATAATGTATGTCTGGAAGGTGATG
GAAAAGATTGTACCTACTGTAAATGGTATTAAAACCACTGAAAACCCCTG
GCTGCGCCGGATGTGTACACTGTCAATTCCAAagaaccaaacatcaaaat
ttagagACAGCACGCTTGCAGTGCAAGGTGCAAAACTTTTTAATGCTATG
CCAAAGAGCATCAGAAACCTCAAAAACATTTCTATCGATAAATTCAAAAG
AGCCCTGGACACACACCTTAAGTCTATCCCAGATGAACCCCAGATCCATG
GATATACTGGGTGCAGGAGAGCCAATTCTAATCAATATTTGACATGAAAA
ATATCTGCTGAGATTCTTTTTCTCTCGACAGATTGATCACACAGAGGCGT
GGTTCACCAAGAACCTTACCTGAAGCAGGATGCTCAAACAACTACACAAG
TAACACAAGTAACAAAAGCTGTGTCACGGTTGAACGGTTGTTAATGAAGC
CATGTTGTTTGTTCGATAAAAGATTATGATCAGAAAGGTGCTTCATGATG
TGTTTCCTCAGTATTGATTCCATTAATTTGCACACTACCGATGTCAAACT
AACAGGTTGATAATTGACTGCCAAATTCTGAGGTCCCTTGTTTTTGTAGA
TAGGTGTGACATGTGCCACCTTCCAATCTTGTGGTAATGAGCCTTCAACT
AAAGAATTGTTCATGATTACAGCCAAGGGTAGAGACAGATAGTCAGATAA
TTCTGCTAGTATCCTAGGGTGTATTTCGTCTGGACCGAATGACTTATTAT
GGTTGAGCTCTTTCAATTGATTCTCTACATCAAGCACCAGTTGTCGCTTC
TTCTCGGGTGTTAGCGTGTCGGCGTTGTAATAAAAGATCCTGATTTCGTT
GATCTTTATTTCAACATCATCTACTTGATTTACGTTATGGTTTTCTTAAA
TTACTCTTCTCCGATTGTTTTCGTTTGAGTAAGATTCTTGGCGAATACTA
CATTCTTCGTGTCTGTCTTCTTTGTTTGGGATCTGATTTTGACCTTGATG
ATGTCGAATCCGTTTTTTGAGTCCCCTCGAACTCTCCATTTATAGATATC
AGAGTTATCATTCTC

Coding sequence (CDS) from alignment at sc0000023:460486..461600

>TCONS_00002921 ID=TCONS_00002921|Name=TCONS_00002921|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000023:460486..461600 (Clytia hemisphaerica)
CAAAGGCAAAGAGAACGCTACAGAATAATGTATGTCTGGAAGGTGATGGA
AAAGATTGTACCTACTGTAAATGGTATTAAAACCACTGAAAACCCCTGGC
TGCGCCGGATGTGTACACTGTCAATTCCAAagaaccaaacatcaaaattt
agagACAGCACGCTTGCAGTGCAAGGTGCAAAACTTTTTAATGCTATGCC
AAAGAGCATCAGAAACCTCAAAAACATTTCTATCGATAAATTCAAAAGAG
CCCTGGACACACACCTTAAGTCTATCCCAGATGAACCCCAGATCCATGGA
TATACTGGGTGCAGGAGAGCCAATTCTAATCAATATTTGACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001594XLOC_001594Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002921-proteinTCONS_00002921-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002921-exon-sc0000023-1491911889:460486..461600TCONS_00002921-exon-sc0000023-1491911889:460486..461600Clytia hemisphaericaexon
TCONS_00002921-exon-sc0000023-1510915933:460486..461600TCONS_00002921-exon-sc0000023-1510915933:460486..461600Clytia hemisphaericaexon
TCONS_00002921-exon-sc0000023-1575043694:460486..461600TCONS_00002921-exon-sc0000023-1575043694:460486..461600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:460486..461600 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.54404	3.43059	7.108	7.05136	4.82648	3.42309	3.59313	4.1806	2.81561	3.75543	4.98594	3.06397	3.2171	3.55569	2.73824	2.9605	2.82805	2.81516	2.30892	2.79102	2.55839	2.54597	1.67926	1.41565	3.89419	4.09783	1.43602	2.37875	1.548	1.69387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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