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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002916 ID=TCONS_00002916|Name=TCONS_00002916|organism=Clytia hemisphaerica|type=transcript|length=2239bp
aattCGTCATcaaaccatggtgggcgacccTTTCTTTTCCTTAAACTTTT
GTATCCTAACTTCAAACAGTTTGCCGAGGTCCTTTTAAAAAAGGAAGATT
TTTTCAAATGGATTGTTCAAAAATCTCGATCGAGTCTCTCTGATTGTACA
TCTATtcgttttttcttataatacgTGACATTATTAATCTCAGTTTATCA
ATACTTTTCGTTAAAACCTCTCCATTAACCGTGGATAAGATGATATCAAA
AGGCTGTCTTAATGACCACGTGACTGCTTGAATGTCATCGCACGTGGgct
ttcttcttcatttcaaGTACTATGTAAAACCAGACTTTTGtcacaaacaa
tttttaaggATTACATGTCTTTTTTATGAAGCAAGTATCTACCGCTAAAC
CAGGCTCACATtctattctattgttctctaaAACAAAAAGAGCGATTGTT
TAGGCACCAAAAACTGATCCTGCGTATGcatataaacgttatgcttatgg
agaaaaaaacatgtacactCCGAGAAAAGAAGACTGTCAGGGACACAGGT
TTTGACAGACGATAGTAATGTGCCCGTTGGAAGCGCTAAATTTACTTTGC
ATCTTCCGTAGATAGCGTTTACAGACAATATTTAATTTGACCTTTCCAAA
TTTTACTGATATTTTTATAACGCTTGATTTTTGAATCCTCACCATAAAAT
TGAAAAGGTGATCTTTCCAAGGGTCGTGTTTCNGATTTTTGAATCCTCAC
CATGAAATTGAAAAGGTGATCTTTCCAAGGGTCGTGTTTCGACCTTGTTT
TTCACAATTGAAGGGAAGGGAAAAAACCCGAGGTCAGGCCAAAAACATTT
TAgagccacattttaagcccttcgggcttgaaactcgatGGTTTTTACAG
GGTTTAGCATTCAACGGGTGACGGAATCTGGGCCGTGCGGCCGTCCGCGT
ACGAATGATAAGAAAGCACATGACAGATTATTCCAACTGATAAAGTGACG
TGTCTTTCAATTAAGCGTTATTAAACATGCGGTCGAAgcgaaatttgcaa
aagtttatCGATCTCTGTGTGTTTCATGATTTTATCAACCTAATTTGATT
AGATTGTGACTTTGCTGTGTGATTCTTTCTACCCACTCGTATCCGTGTCT
TTGGAAAAACGGCGTGAAAAAGGTCATCAAACCTATATCTATATAGCGTC
GAGTGGCCCTGTTTACGCCGGTGACTTATAGAGCGACCCTTGTATGTCGC
AACCATAATTTGAGTGAAGCTTATGCGAACAATCTCAACACTCTGGACTT
TTTTTACATTTCACCAACACTCATTGGACCATTATATTTTACATCCGtat
ggacgaacatttccagagggtaatccgagaaaatttccagggggtgcttt
ttcatttttccaaggggggtAAAAAGCTATGTAAAGATTTCCAGGgagta
aaagactgattttagttcgtccaccctcactttaaggtataaaaataatt
tttccaagggtatttttgcaaattttgccattttccaggggttatccaca
cattttcaataatttctttttgacttaaaaagattCGTCTAACCCCCTGT
TttttatggaacagcccattttgCGAGGTCGTAGACCAACCAACTACTTC
AATGGgatagcgcttctttgatgccattaaaagtagtttatttgacattt
tttagttttgtttaaaaatatttcgcggacaagacctttccaaatttcct
ttgggatttaattttttaatgacactcaaattcgcgaaatccgcgaaatt
taatccccacgaaattttatcccatatAAAATAAGAGAAGAATTTTCGGC
AAGAAGATATTTTAGCAAATCCTATCTAACTTTTTAATCCTATCTGACTG
GAGGTATAATACTAAGTATTTcagctgaaaaagtttttcgatAAAATTCT
AAACCAAAgctaaagaaaattgaatttggcGAGAATTGAGGTTTGGCGAG
AATTGAGGTTTGGCGAGTTTAGCGAATTTCTGATTGCTTGGAGAAAATTA
GCTTGAAAggaaattattattataagaATGGTCAACTAAAAATGCTTATA
TAATGCTTGGTAAGAATTTTTGATCACTCACTCTCACATGTCATTAATTC
CATTTAATTTATCTCTTAATTACAAATTATTCATTTGAAGTGGAAAATGA
AATCTTATCACGATTATCAAAGAGAAAACAATATGGGAA Run BLAST on NCBI transcript from alignment at sc0000023:266152..268390 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002916 ID=TCONS_00002916|Name=TCONS_00002916|organism=Clytia hemisphaerica|type=transcript|length=2239bp|location=Sequence derived from alignment at sc0000023:266152..268390 (Clytia hemisphaerica)
TTCCCATATTGTTTTCTCTTTGATAATCGTGATAAGATTTCATTTTCCAC
TTCAAATGAATAATTTGTAATTAAGAGATAAATTAAATGGAATTAATGAC
ATGTGAGAGTGAGTGATCAAAAATTCTTACCAAGCATTATATAAGCATTT
TTAGTTGACCATtcttataataataatttccTTTCAAGCTAATTTTCTCC
AAGCAATCAGAAATTCGCTAAACTCGCCAAACCTCAATTCTCGCCAAACC
TCAATTCTCgccaaattcaattttctttagcTTTGGTTTAGAATTTTatc
gaaaaactttttcagctgAAATACTTAGTATTATACCTCCAGTCAGATAG
GATTAAAAAGTTAGATAGGATTTGCTAAAATATCTTCTTGCCGAAAATTC
TTCTCTTATTTTatatgggataaaatttcgtggggattaaatttcgcgga
tttcgcgaatttgagtgtcattaaaaaattaaatcccaaaggaaatttgg
aaaggtcttgtccgcgaaatatttttaaacaaaactaaaaaatgtcaaat
aaactacttttaatggcatcaaagaagcgctatcCCATTGAAGTAGTTGG
TTGGTCTACGACCTCGcaaaatgggctgttccataaaaAACAGGGGGTTA
GACGaatctttttaagtcaaaaagaaattattgaaaatgtgtggataacc
cctggaaaatggcaaaatttgcaaaaatacccttggaaaaattattttta
taccttaaagtgagggtggacgaactaaaatcagtcttttactcCCTGGA
AATCTTTACATAGCTTTTTaccccccttggaaaaatgaaaaagcaccccc
tggaaattttctcggattaccctctggaaatgttcgtccataCGGATGTA
AAATATAATGGTCCAATGAGTGTTGGTGAAATGTAAAAAAAGTCCAGAGT
GTTGAGATTGTTCGCATAAGCTTCACTCAAATTATGGTTGCGACATACAA
GGGTCGCTCTATAAGTCACCGGCGTAAACAGGGCCACTCGACGCTATATA
GATATAGGTTTGATGACCTTTTTCACGCCGTTTTTCCAAAGACACGGATA
CGAGTGGGTAGAAAGAATCACACAGCAAAGTCACAATCTAATCAAATTAG
GTTGATAAAATCATGAAACACACAGAGATCGataaacttttgcaaatttc
gcTTCGACCGCATGTTTAATAACGCTTAATTGAAAGACACGTCACTTTAT
CAGTTGGAATAATCTGTCATGTGCTTTCTTATCATTCGTACGCGGACGGC
CGCACGGCCCAGATTCCGTCACCCGTTGAATGCTAAACCCTGTAAAAACC
atcgagtttcaagcccgaagggcttaaaatgtggctcTAAAATGTTTTTG
GCCTGACCTCGGGTTTTTTCCCTTCCCTTCAATTGTGAAAAACAAGGTCG
AAACACGACCCTTGGAAAGATCACCTTTTCAATTTCATGGTGAGGATTCA
AAAATCNGAAACACGACCCTTGGAAAGATCACCTTTTCAATTTTATGGTG
AGGATTCAAAAATCAAGCGTTATAAAAATATCAGTAAAATTTGGAAAGGT
CAAATTAAATATTGTCTGTAAACGCTATCTACGGAAGATGCAAAGTAAAT
TTAGCGCTTCCAACGGGCACATTACTATCGTCTGTCAAAACCTGTGTCCC
TGACAGTCTTCTTTTCTCGGagtgtacatgtttttttctccataagcata
acgtttatatgCATACGCAGGATCAGTTTTTGGTGCCTAAACAATCGCTC
TTTTTGTTttagagaacaatagaatagaATGTGAGCCTGGTTTAGCGGTA
GATACTTGCTTCATAAAAAAGACATGTAATccttaaaaattgtttgtgaC
AAAAGTCTGGTTTTACATAGTACttgaaatgaagaagaaagcCCACGTGC
GATGACATTCAAGCAGTCACGTGGTCATTAAGACAGCCTTTTGATATCAT
CTTATCCACGGTTAATGGAGAGGTTTTAACGAAAAGTATTGATAAACTGA
GATTAATAATGTCAcgtattataagaaaaaacgaATAGATGTACAATCAG
AGAGACTCGATCGAGATTTTTGAACAATCCATTTGAAAAAATCTTCCTTT
TTTAAAAGGACCTCGGCAAACTGTTTGAAGTTAGGATACAAAAGTTTAAG
GAAAAGAAAgggtcgcccaccatggtttgATGACGaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002916-exon-sc0000023-1491911889:266152..268390 | TCONS_00002916-exon-sc0000023-1491911889:266152..268390 | Clytia hemisphaerica | exon |
| TCONS_00002916-exon-sc0000023-1510915933:266152..268390 | TCONS_00002916-exon-sc0000023-1510915933:266152..268390 | Clytia hemisphaerica | exon |
| TCONS_00002916-exon-sc0000023-1575043694:266152..268390 | TCONS_00002916-exon-sc0000023-1575043694:266152..268390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:266152..268390 . |
Blast
The following BLAST results are available for this feature:
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