TCONS_00002915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002915
Unique NameTCONS_00002915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002915 ID=TCONS_00002915|Name=TCONS_00002915|organism=Clytia hemisphaerica|type=transcript|length=599bp
GAAAACCTTATAATTGTCACTGACTCGCCCTCAAAAGAACTTAACGTCTT
TTTATGCTTCTCTGTACCTCAGCTAGAGAAATTATTTACCAAGAAAATCC
AATGTGACAGATTACCAAAAGGCTGGTTTTTCTACGGACACAAATTGATA
GGACAACGAATGGTATTGATTACCTCAAACGTAACGGATATTGAATTCAA
TGTGGCATCAGTCAGAACTGACAGAGAAAGTGCTGGTTTGATTCACTTTA
AAACATTCTCACTTTCCATGCTTGGGATACCCGCTCCTGGACAGGACTGC
ACTCATCAGTCATATACAGTCCATTGTGATTCCAACATTTTATTCATCAC
ATTTGGTAAAGTGACCTATATGGTGGACATAGAGAAACAAATATTGGTTT
ACTCTTTCTTGTTAACTCAAGTCCAAAATTCCATGACCGAACATTTAGAT
ATCAGCTATGAAGACAATAAACTGTTTGTTTGGAGAAAATTAACATTAAC
TCCTTATTTCGATGAAGATTTGGATCAATATTTCGATATATCATTCGCCA
ATTATTACCTAGATGTATATCATGTTCCGCTACCAGAGATCACGCTGTT
Run BLAST on NCBI

protein sequence of TCONS_00002915-protein

>TCONS_00002915-protein ID=TCONS_00002915-protein|Name=TCONS_00002915-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
ENLIIVTDSPSKELNVFLCFSVPQLEKLFTKKIQCDRLPKGWFFYGHKLI
GQRMVLITSNVTDIEFNVASVRTDRESAGLIHFKTFSLSMLGIPAPGQDC
THQSYTVHCDSNILFITFGKVTYMVDIEKQILVYSFLLTQVQNSMTEHLD
ISYEDNKLFVWRKLTLTPYFDEDLDQYFDISFANYYLDVYHVPLPEITL
Run BLAST on NCBI

transcript from alignment at sc0000023:234378..234976

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002915 ID=TCONS_00002915|Name=TCONS_00002915|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0000023:234378..234976 (Clytia hemisphaerica)
AACAGCGTGATCTCTGGTAGCGGAACATGATATACATCTAGGTAATAATT
GGCGAATGATATATCGAAATATTGATCCAAATCTTCATCGAAATAAGGAG
TTAATGTTAATTTTCTCCAAACAAACAGTTTATTGTCTTCATAGCTGATA
TCTAAATGTTCGGTCATGGAATTTTGGACTTGAGTTAACAAGAAAGAGTA
AACCAATATTTGTTTCTCTATGTCCACCATATAGGTCACTTTACCAAATG
TGATGAATAAAATGTTGGAATCACAATGGACTGTATATGACTGATGAGTG
CAGTCCTGTCCAGGAGCGGGTATCCCAAGCATGGAAAGTGAGAATGTTTT
AAAGTGAATCAAACCAGCACTTTCTCTGTCAGTTCTGACTGATGCCACAT
TGAATTCAATATCCGTTACGTTTGAGGTAATCAATACCATTCGTTGTCCT
ATCAATTTGTGTCCGTAGAAAAACCAGCCTTTTGGTAATCTGTCACATTG
GATTTTCTTGGTAAATAATTTCTCTAGCTGAGGTACAGAGAAGCATAAAA
AGACGTTAAGTTCTTTTGAGGGCGAGTCAGTGACAATTATAAGGTTTTC

Coding sequence (CDS) from alignment at sc0000023:234378..234976

>TCONS_00002915 ID=TCONS_00002915|Name=TCONS_00002915|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000023:234378..234976 (Clytia hemisphaerica)
CAGCGTGATCTCTGGTAGCGGAACATGATATACATCTAGGTAATAATTGG
CGAATGATATATCGAAATATTGATCCAAATCTTCATCGAAATAAGGAGTT
AATGTTAATTTTCTCCAAACAAACAGTTTATTGTCTTCATAGCTGATATC
TAAATGTTCGGTCATGGAATTTTGGACTTGAGTTAACAAGAAAGAGTAAA
CCAATATTTGTTTCTCTATGTCCACCATATAGGTCACTTTACCAAATGTG
ATGAATAAAATGTTGGAATCACAATGGACTGTATATGACTGATGAGTGCA
GTCCTGTCCAGGAGCGGGTATCCCAAGCATGGAAAGTGAGAATGTTTTAA
AGTGAATCAAACCAGCACTTTCTCTGTCAGTTCTGACTGATGCCACATTG
AATTCAATATCCGTTACGTTTGAGGTAATCAATACCATTCGTTGTCCTAT
CAATTTGTGTCCGTAGAAAAACCAGCCTTTTGGTAATCTGTCACATTGGA
TTTTCTTGGTAAATAATTTCTCTAGCTGAGGTACAGAGAAGCATAAAAAG
ACGTTAAGTTCTTTTGAGGGCGAGTCAGTGACAATTATAAGGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001588XLOC_001588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002915-exon-sc0000023-1491911889:234378..234976TCONS_00002915-exon-sc0000023-1491911889:234378..234976Clytia hemisphaericaexon
TCONS_00002915-exon-sc0000023-1510915933:234378..234976TCONS_00002915-exon-sc0000023-1510915933:234378..234976Clytia hemisphaericaexon
TCONS_00002915-exon-sc0000023-1575043694:234378..234976TCONS_00002915-exon-sc0000023-1575043694:234378..234976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002915-proteinTCONS_00002915-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:234378..234976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.109491	0	0	0	0	0.786504	0.816793	0	0	0	0	0.967016	1.82144	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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