TCONS_00002902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002902
Unique NameTCONS_00002902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002902 ID=TCONS_00002902|Name=TCONS_00002902|organism=Clytia hemisphaerica|type=transcript|length=808bp
TTCAACACAGTCATGCTGGTCAATGgACTACAAACCTCTTCAAAGGTTTC
ACCACTGAGCTTATGCCACCGTGCGGATTGCACCTAATTCTTGCAAATCA
CCGATACATCGGGAAGTTTCTATTTGATGTTGTTAGCAAACGCAAAATGG
AACATTTGATACCTAGTGTGCTCAGGAAGATTGGATGTGGTTATTTAGCT
TATCAATTGGAACAGTACCACAAAagCAACAAAAAGCAGTATGATGGGTC
CGACAAGTTGAAAATGATCGGCAATGATTGCAAGTTGTTGGAAGAAAACG
TGGACGCCTTGTTAGATACATTCATTCGAGCTGAATAAGGTGAAACATGG
AAATCCGATTCAACTGTGAAACTCAGACAGATCCTCTCTTTGTACAAGTC
ATTTGCAGACCTTGCAAGATATGTCAGATCTGTTACACCAAACACGGAAC
GCATAGCAACATTTAACATCAGAGCCGAACAATATTTCAAGAAGTTTGTT
TCGAATGCCAGCAGTTCAGCAGTTGACAAGTTACCCTACCTTCACTACTT
ACGATACCATGTAGGTGACTTAATGAAATTCCATTCCGACTACTTTGGTT
TTGGGTATGCTGTCATGCTGGTGAATATTTGAACAAAGTCATCAAAACCA
GTGAAATTACTGATACCAACTTGAATAAAAGTAGATTTCACAAAATTATC
CATTTGATCCGAGTAAAACAATTAATCTTTACTGACATAATTTTGCGTAA
GGTACCATCCATTAAATGTGATGCCTGTAGTGAATTTGGGCACAACCAAA
AGAATAAA
Run BLAST on NCBI

protein sequence of TCONS_00002902-protein

>TCONS_00002902-protein ID=TCONS_00002902-protein|Name=TCONS_00002902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
QHSHAGQWTTNLFKGFTTELMPPCGLHLILANHRYIGKFLFDVVSKRKME
HLIPSVLRKIGCGYLAYQLEQYHKSNKKQYDGSDKLKMIGNDCKLLEENV
DALLDTFIRAE
Run BLAST on NCBI

transcript from alignment at sc0000023:1014120..1018345-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002902 ID=TCONS_00002902|Name=TCONS_00002902|organism=Clytia hemisphaerica|type=transcript|length=4226bp|location=Sequence derived from alignment at sc0000023:1014120..1018345- (Clytia hemisphaerica)
TTCAACACAGTCATGCTGGTCAATGGGTATTTCTTTTTATTTTTATTTAT
GAATTTCTATGAATTATTGCTACATTTTTGGTAGCCTGGATATCCAAGCT
CAAAATTTTAGAAAAAACAAAGTTTACCTAACATGCAAAGTTCTAAAATT
ATAGAGCTTGGTCTCCCTAGAGAATGAAAGTGAAAACCCATGTTTCCTAG
CCAACCCAGGGCAGCAAAACAGAAATTAATAAAAAGCAGTCTTCCAAGAT
CTAAAACTATTAAAAACATCCAAAGATTACACCAAAGTCCATAAAAAAGT
TTGCAAGCATTATCATGACCAACCATGTTTTCTTGGAAAATGAACTTGCC
TCTGTTTTCTTCTTTTTCATGTTTTCATGTAACAGAAAGCCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTAGAATTGCTCAACGCCGTGTAGATTGGCCCTTACGGTTTTAGCGA
AGTGAGCGCAAGCAAGCGGACTGCATTCTCTTAAAGAGAATGCAAATCGC
TTTAGGCAGATCAGGCTGTAAACCAGAACATAAAATATCAATATGGTCTG
GATATCCAGGCTACATTTTTGGTGCAGTTTATAACCACTTTGTTCATTTC
TAATAATTTAAGACAAATTTGGGTTTCATATGTAAATTATCAAAAAGTTT
TGTTGCATATTAAAACATTTCTTTTTTCCCTTTTCTAAATAGTTTAGTAG
TTCAAAGATTTAACTTATTCATTCTAATTCAGGTACAAAGTGTATTTTCA
ATAAAGCATTTGGGTTTATATACTTACGCAATATTCAAATTTTCAAAATA
ACGCAAGCAAAGTACACTTTTGTTTTTAATGAATTCAATTGTATTTAAAC
TTATTATTTTTCTCTATCCTTCCCTTCAGACTACAAACCTCTTCAAAGGT
TTCACCACTGAGCTTATGCCACCGTGCGGATTGCACCTAATTCTTGCAAA
TCACCGATACATCGGGAAGTTTCTATTTGATGTTGTTAGCAAACGCAAAA
TGGAACATTTGATACCTAGTGTGCTCAGGAAGATTGGATGTGGTTATTTA
GCTTATCAATTGGAACAGTACCACAAAAGGTCATTTTTTTTCAATTTCTT
GACAAATTTCCACATTACACAGTTGACAAAAAAATTGAAATTAATATACT
AGATAAAAACTTATTTCTCTGACTGCATGATAGCCAAATTTATTTTTCTA
CGTTTTGAATCGATTTTTATTCATAACAATATCGTCGCATGAGAAATAAA
GAGATTTTTCTCCATTTTCCTTGTTTTGAGATATTAGCATTTAAAAATTT
AGAAATGAAAAGACTTATCTCCAGAAAATGGAGATAAATCTTTTTACTTC
TCAAAATTGTGAATTTTGTTACCTATTACTTTACATATAAAAAATGAATT
TAAGTCTTTTTACTTTGGATTTAGGGCTGTCTTTTATATATAATTTGTTC
AAGTCTGCAAACCATTAAAAAATAGAGATAATATCCAAATTTAAGGCCAA
AAAGTCAAACCTCATGGATTTAGGTCCGTTTATCTCCAAGAATTTTTTCT
GAAGAATATGAATCAATCATTGTCTCATTTTTCGAAAGATTGGAGTTAAG
TCTCTTTATTTCTCATGCGACGATATTTTTCTCACCAGCAACAAAAAGCA
GTATGATGGGTCCGACAAGTTGAAAATGATCGGCAATGATTGCAAGTTGT
TGGAAGAAAACGTGGACGCCTTGTTAGATACATTCATTCGAGCTGAATAA
GGTGAAACATGGAAATCCGATTCAACTGTGAAACTCAGACAGATCCTCTC
TTTGTACAAGTCATTTGCAGACCTTGCAAGGTTTAAAAAATTGATCAAGA
TTTTTCATTCTTCCTTTTCTTATTTCCTAGTCTTCAATCAAATATTTTTT
GCCTTTTACCTTACCGGATTTTCAACTTTTCAACTATGGAACTTAATTAT
CAAGAAAAACCATACACGTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGTTCCTGTAGAGATATCGAAAAATTCCTTTG
AAAACAGTATGGCGTCTCCGTCTGACTGAAACCAACACAACCGGGGCTCA
TTGGGAGTTCTGAAGCCGATAAGGATTCTCCTTAAACCCGCAACTCGACT
CCAAGCAAATAGTTTTACTTAGGAGAAGAGCGCGGATTCTAGACTGTTCG
AACCGGAGCTGGCCTCTACACTTGTACTGTAATTTTGCGCCCCATTTGTG
TCAACAACTTGGTGCGACAAGAGCGCGAGAAAATTTGAAGGCCTTCAGAA
GCCAGTTGAAATTTCTGAAAGTTGAGTGCACATCAAAATTCAAAATTTGT
AATTATGGAGCGAAAAAAGAGTTTTGCATGCTAATACTTGGGGAAGTTGC
TTTTCATATGATTATGAAGTGAGTGTCTTATTATCATTTTTAAGCGAGGG
GTCCCTTTAACATAATTTTTGTTTATTTTACTGCAGATATGTCAGATCTG
TTACACCAAACACGGAACGCATAGCAACATTTAACATCAGAGCCGAACAA
TATTTCAAGAAGTTTGTTTCGAATGCCAGCAGTTCAGCAGTTGACAAGTT
ACCCTACCTTCACTACTTACGATACCATGTAGGTGACTTAATGAAATTCC
ATTCCGACTACTTTGGTTTTGGGTATGCTGTCATGCTGGTGAATATTTGA
ACAAAGTCATCAAAACCAGTGAAATTACTGATACCAACTTGAATAAAAGT
AGATTTCACAAAATTATCCATTTGATCCGAGTAAAACAATTAATCTTTAC
TGACATAATTTTGCGTAAGGTACCATCCATTAAATGTGATGCCTGTAGTG
AATTTGGGCACAACCAAAAGAATAAA

Coding sequence (CDS) from alignment at sc0000023:1014120..1018345-

>TCONS_00002902 ID=TCONS_00002902|Name=TCONS_00002902|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000023:1014120..1018345- (Clytia hemisphaerica)
CAACAAAAAGCAGTATGATGGGTCCGACAAGTTGAAAATGATCGGCAATG
ATTGCAAGTTGTTGGAAGAAAACGTGGACGCCTTGTTAGATACATTCATT
CGAGCTGAATAAACTACAAACCTCTTCAAAGGTTTCACCACTGAGCTTAT
GCCACCGTGCGGATTGCACCTAATTCTTGCAAATCACCGATACATCGGGA
AGTTTCTATTTGATGTTGTTAGCAAACGCAAAATGGAACATTTGATACCT
AGTGTGCTCAGGAAGATTGGATGTGGTTATTTAGCTTATCAATTGGAACA
GTACCACAAAAGCAACACAGTCATGCTGGTCAATGGCAACAAAAAGCAGT
ATGATGGGTCCGACAAGTTGAAAATGATCGGCAATGATTGCAAGTTGTTG
GAAGAAAACGTGGACGCCTTGTTAGATACATTCATTCGAGCTGAATAAAC
TACAAACCTCTTCAAAGGTTTCACCACTGAGCTTATGCCACCGTGCGGAT
TGCACCTAATTCTTGCAAATCACCGATACATCGGGAAGTTTCTATTTGAT
GTTGTTAGCAAACGCAAAATGGAACATTTGATACCTAGTGTGCTCAGGAA
GATTGGATGTGGTTATTTAGCTTATCAATTGGAACAGTACCACAAAAGCA
ACACAGTCATGCTGGTCAATGGCAACAAAAAGCAGTATGATGGGTCCGAC
AAGTTGAAAATGATCGGCAATGATTGCAAGTTGTTGGAAGAAAACGTGGA
CGCCTTGTTAGATACATTCATTCGAGCTGAATAAACTACAAACCTCTTCA
AAGGTTTCACCACTGAGCTTATGCCACCGTGCGGATTGCACCTAATTCTT
GCAAATCACCGATACATCGGGAAGTTTCTATTTGATGTTGTTAGCAAACG
CAAAATGGAACATTTGATACCTAGTGTGCTCAGGAAGATTGGATGTGGTT
ATTTAGCTTATCAATTGGAACAGTACCACAAAAGCAACACAGTCATGCTG
GTCAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001575XLOC_001575Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002902-proteinTCONS_00002902-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002902-exon-sc0000023-1575043694:1018320..1018345TCONS_00002902-exon-sc0000023-1575043694:1018320..1018345Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1575043694:1017117..1017316TCONS_00002902-exon-sc0000023-1575043694:1017117..1017316Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1575043694:1016366..1016557TCONS_00002902-exon-sc0000023-1575043694:1016366..1016557Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1575043694:1014120..1014509TCONS_00002902-exon-sc0000023-1575043694:1014120..1014509Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1510915933:1018320..1018345TCONS_00002902-exon-sc0000023-1510915933:1018320..1018345Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1510915933:1017117..1017316TCONS_00002902-exon-sc0000023-1510915933:1017117..1017316Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1510915933:1016366..1016557TCONS_00002902-exon-sc0000023-1510915933:1016366..1016557Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1510915933:1014120..1014509TCONS_00002902-exon-sc0000023-1510915933:1014120..1014509Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1491911889:1018320..1018345TCONS_00002902-exon-sc0000023-1491911889:1018320..1018345Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1491911889:1017117..1017316TCONS_00002902-exon-sc0000023-1491911889:1017117..1017316Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1491911889:1016366..1016557TCONS_00002902-exon-sc0000023-1491911889:1016366..1016557Clytia hemisphaericaexon
TCONS_00002902-exon-sc0000023-1491911889:1014120..1014509TCONS_00002902-exon-sc0000023-1491911889:1014120..1014509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:1014120..1018345 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.26227	0.412151	0.0299316	0	0.354673	0.41345	0.467099	0.539585	0.58238	0.586756	0.349522	0.640997	0.550811	0.32452	0.434811	0.598947	0.671158	0.282277	0.612113	0.245602	0.960227	0.807863	0.191511	0.421371	0	0.145527	1.32292	0.618449	0.765594	1.03321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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