TCONS_00002886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002886
Unique NameTCONS_00002886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002886 ID=TCONS_00002886|Name=TCONS_00002886|organism=Clytia hemisphaerica|type=transcript|length=1590bp
CTGTGACCCAGTGGCATTTTTTCTCAAGAGTTTAGTGAATTTTACAATTG
AGACGTAAACTCTAGTGTATTTTCTCCCAGTCAATTCcgaccaatttttc
cagtaagAAGGGATTCCGTCCGCCTGTGATATGGGGGTGCTAAACATAAA
CGACCCCCATTACTTTACagcttaatatgttcttataaactatgTTCTTA
ATCCTAAAAGCTCACGGCTACTTGAATTAAGAATTTGATCGACGGTGTTT
GATACATAAACATGAACTTTGTCATAATACAAGATTATGTAACTTCAAAT
GTAGTGTataaaagtcaggtttttgtaGACTGAAAGAACAGTGAAATCGC
ACATATTCAATAACGTCGAAAGAAGTTGAAAGAGTTTTCTATTGTTGGAA
AAGAACATTGGGATATAAATCAAAAACAAGAAGATGAGATTGATAGCATT
CATCGTGGTTTTGTGTTTGTGTTCAACACGGTTAGAAGCTAAaccaaatt
tcttcaaaaacatgttaGGCAAACTCCATAACGCAGTGAAAGAAGTAGTT
GGAGACAAATCCGAACGTGAAGATGGTAAACCATGGTTTTGTCATGATTT
GGACTGTCCAGAATTCAAAGTTGTCCGAAAGATCACAGTCAACGATGATC
TGGAAATTGAAGAGAGATGCTATCCTGAAACAACTTGGGTTCAAACAACA
ATGAATGGTGACCGCCAAAATTTAAAATACTACACCATGTTCCAAAAACT
TTTCGCCTACATTCAAAAAGACGAAAACGTAAAGAAAGAGAAAATCGAAA
TGACTGCACCAGTCCTTGTCTCCGTCACTGACGTAAACGACGAAACAGTT
AACGCCCAAATGGGATTCTTTGTACCACCCGCTGAAGAATCAACCGCCCC
AGCACCCACCCGTAAAGATGTCAAAATCGGTAGTAAAACTCCAATGTGCG
TTTATGTTTACTCCTACGGTGGATGGCAAATGAATTTGGACAACAAATTC
TGGAAAAAtgtcaatattttgaaagaCGGATTAAGAGAGGCTGGTGTTAC
GGACTTTGATGAGAGCGCCGGAGCTATGTTCGCTGGGTATGATAGCCCAT
TCAGAGTTTTTAACCGTCACAATGAAGTAATGGTATTGAAGAAACCAAGT
GAAGAAATCAAAGTTGAAAACAAATCTTCGTAAACTTTCTTAtttagatt
ttaaatttaagatttacTCTTTGGGTTGATATGATGTGTTATTTCTGACT
ACGTTATATGCTCCACACTCTAGCATTGACAGAGAAAATCGGTTTTCCTT
TGACAAGACACTATTTAGATCTCTATAAGAGCTTGACGAATATTCCTGTT
TTATGAATGTTTTCCTGAATATTttcgtttttaatttttgtatattatcg
agaacttttattttgtaaaaaaagacaGAATATAAACCAACTCTCTTTCA
TCGTTCGATCACACCCTTTTATTTAATCTGAGGTGAATGGGAGTCTAAAC
TAAAGATAGACAACTTCGAAACTAATCCTTTCATGGGACATAGGGTCATC
AACGTCATTTATGATGACGTCTAGTAAAACCTACCataag
Run BLAST on NCBI

protein sequence of TCONS_00002886-protein

>TCONS_00002886-protein ID=TCONS_00002886-protein|Name=TCONS_00002886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MRLIAFIVVLCLCSTRLEAKPNFFKNMLGKLHNAVKEVVGDKSEREDGKP
WFCHDLDCPEFKVVRKITVNDDLEIEERCYPETTWVQTTMNGDRQNLKYY
TMFQKLFAYIQKDENVKKEKIEMTAPVLVSVTDVNDETVNAQMGFFVPPA
EESTAPAPTRKDVKIGSKTPMCVYVYSYGGWQMNLDNKFWKNVNILKDGL
REAGVTDFDESAGAMFAGYDSPFRVFNRHNEVMVLKKPSEEIKVENKSS
Run BLAST on NCBI

transcript from alignment at sc0000023:710483..713033-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002886 ID=TCONS_00002886|Name=TCONS_00002886|organism=Clytia hemisphaerica|type=transcript|length=2551bp|location=Sequence derived from alignment at sc0000023:710483..713033- (Clytia hemisphaerica)
CTGTGACCCAGTGGCATTTTTTCTCAAGAGTTTAGTGAATTTTACAATTG
AGACGTAAACTCTAGTGTATTTTCTCCCAGTCAATTCCGACCAATTTTTC
CAGTAAGAAGGGATTCCGTCCGCCTGTGATATGGGGGTGCTAAACATAAA
CGACCCCCATTACTTTACAGCTTAATATGTTCTTATAAACTATGTTCTTA
ATCCTAAAAGCTCACGGCTACTTGAATTAAGAATTTGATCGACGGTGTTT
GATACATAAACATGAACTTTGTCATAATACAAGATTATGTAACTTCAAAT
GTAGTGTATAAAAGTCAGGTTTTTGTAGACTGAAAGAACAGTGAAATCGC
ACATATTCAATAACGTCGAAAGAAGTTGAAAGAGTTTTCTATTGTTGGAA
AAGGTAAGGCAAAATCGATTCTTATATTGGATTGAATGAGGTAGACTTTT
AGAACGGTTTTTGGCAATGGGGATAGATATTACCAAAGATATTACAAGGT
CCTACATGAACCCTGCGCCCTGCAGACCTTCAGTTCATGCAACCAAATTT
ACGCAATTTCTGTTCACACAAAGTTTTCCAATTCACGCATTCACGCAGCT
TTTTTTTAATTTTCACGCATTCATACAAGTGAAAAGCCCTTTCACGCAAT
AAACCGTTGGAGGGAGGGGGCCCTACATCACAAGCCTGGTTAGATATTGG
ACTAAATATCCGCCGTTAAAATGTGACTGTTATCTCCTTATGGAAGCAAG
ATGCCCATAGAACGTGTATCTATCAACAACCCTTGCTTTTGAAGCGTGAA
TGACTTATAAATTATGTAATACCTAAATTTTTATGTAAGTTATGCTTTTA
ATCATCAAATCATAATAATTACATAAAAATTGTCTTTCCAGCAGAACATT
GGGATATAAATCAAAAACAAGAAGATGAGATTGATAGCATTCATCGTGGT
TTTGTGTTTGTGTTCAACACGGTTAGAAGCTAAACCAAATTTCTTCAAAA
ACATGTTAGGCAAACTCCATAACGCAGTGAAAGAAGTAGTTGGAGACAAA
TCCGAACGTGAAGATGGTAAACCATGGTTTTGTCATGATTTGGACTGTCC
AGAATTCAAAGTTGTCCGAAAGATCACAGTCAACGATGATCTGGAAATTG
AAGAGAGATGCTATCCTGAAACAACTTGGGTTCAAACAACAATGAATGGT
GACCGCCAAAATTTAAGTAAGTTTTGCATTAGTAGTCATTCTTTTTTTTG
ACAAGTGCGGTTGAAGGGTTGAATACAACCTAAGGGAACACCCCTGTCTC
CCACTCCAGTGGGACTTCTTCCATAGTGGGGAGGAGTGCATTTTATTTCT
ATTCCATTTCATTTGGGGATGAAAACAAAGTCAATTTTTCGTGTGGTTGT
AATTTTATTTTTCTCACCAAGGGGACAAAGTTTGACCAAATTTTCCAATG
GATAGGGCGCTCGGGTAACTTAATGCATGTCCCAGAATTGCATTAATTTT
TACGCCCCAGTTCCAGTCCCTAAACCATAACAAACTATAGTTTGTTATGG
TTTAGGGACTGGAACTGGGGCGGAAAAATTAATGCAATTCTGGGACATGC
ATTAAGTTACCCGAGGACCAACTGGTCTGTGACAAAGGGGTGTAAGGGTT
ATTAAGTACTAAAAAGTTTTCATTCTTTCCTCTCAGAATACTACACCATG
TTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAAAACGTAAAGAAAGA
GAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGTCACTGACGTAAACG
ACGAAACAGTTAACGCCCAAATGGGATTCTTTGTACCACCCGCTGAAGAA
TCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAAATCGGTAGTAAAAC
TCCAATGTGCGTTTATGTTTACTCCTACGGTGGATGGCAAATGAATTTGG
ACAACAAATTCTGGAAAAATGTCAATATTTTGAAAGACGGATTAAGAGAG
GCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCTATGTTCGCTGGGTA
TGATAGCCCATTCAGAGTTTTTAACCGTCACAATGAAGTAATGGTATTGA
AGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAATCTTCGTAAACTTTC
TTATTTAGATTTTAAATTTAAGATTTACTCTTTGGGTTGATATGATGTGT
TATTTCTGACTACGTTATATGCTCCACACTCTAGCATTGACAGAGAAAAT
CGGTTTTCCTTTGACAAGACACTATTTAGATCTCTATAAGAGCTTGACGA
ATATTCCTGTTTTATGAATGTTTTCCTGAATATTTTCGTTTTTAATTTTT
GTATATTATCGAGAACTTTTATTTTGTAAAAAAAGACAGAATATAAACCA
ACTCTCTTTCATCGTTCGATCACACCCTTTTATTTAATCTGAGGTGAATG
GGAGTCTAAACTAAAGATAGACAACTTCGAAACTAATCCTTTCATGGGAC
ATAGGGTCATCAACGTCATTTATGATGACGTCTAGTAAAACCTACCATAA
G

Coding sequence (CDS) from alignment at sc0000023:710483..713033-

>TCONS_00002886 ID=TCONS_00002886|Name=TCONS_00002886|organism=Clytia hemisphaerica|type=CDS|length=1500bp|location=Sequence derived from alignment at sc0000023:710483..713033- (Clytia hemisphaerica)
AATACTACACCATGTTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAA
AACGTAAAGAAAGAGAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGT
CACTGACGTAAACGACGAAACAGTTAACGCCCAAATGGGATTCTTTGTAC
CACCCGCTGAAGAATCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAA
ATCGGTAGTAAAACTCCAATGTGCGTTTATGTTTACTCCTACGGTGGATG
GCAAATGAATTTGGACAACAAATTCTGGAAAAATGTCAATATTTTGAAAG
ACGGATTAAGAGAGGCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCT
ATGTTCGCTGGGTATGATAGCCCATTCAGAGTTTTTAACCGTCACAATGA
AGTAATGGTATTGAAGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAAT
CTTCGTAAATGAGATTGATAGCATTCATCGTGGTTTTGTGTTTGTGTTCA
ACACGGTTAGAAGCTAAACCAAATTTCTTCAAAAACATGTTAGGCAAACT
CCATAACGCAGTGAAAGAAGTAGTTGGAGACAAATCCGAACGTGAAGATG
GTAAACCATGGTTTTGTCATGATTTGGACTGTCCAGAATTCAAAGTTGTC
CGAAAGATCACAGTCAACGATGATCTGGAAATTGAAGAGAGATGCTATCC
TGAAACAACTTGGGTTCAAACAACAATGAATGGTGACCGCCAAAATTTAA
AATACTACACCATGTTCCAAAAACTTTTCGCCTACATTCAAAAAGACGAA
AACGTAAAGAAAGAGAAAATCGAAATGACTGCACCAGTCCTTGTCTCCGT
CACTGACGTAAACGACGAAACAGTTAACGCCCAAATGGGATTCTTTGTAC
CACCCGCTGAAGAATCAACCGCCCCAGCACCCACCCGTAAAGATGTCAAA
ATCGGTAGTAAAACTCCAATGTGCGTTTATGTTTACTCCTACGGTGGATG
GCAAATGAATTTGGACAACAAATTCTGGAAAAATGTCAATATTTTGAAAG
ACGGATTAAGAGAGGCTGGTGTTACGGACTTTGATGAGAGCGCCGGAGCT
ATGTTCGCTGGGTATGATAGCCCATTCAGAGTTTTTAACCGTCACAATGA
AGTAATGGTATTGAAGAAACCAAGTGAAGAAATCAAAGTTGAAAACAAAT
CTTCGTAAATGAGATTGATAGCATTCATCGTGGTTTTGTGTTTGTGTTCA
ACACGGTTAGAAGCTAAACCAAATTTCTTCAAAAACATGTTAGGCAAACT
CCATAACGCAGTGAAAGAAGTAGTTGGAGACAAATCCGAACGTGAAGATG
GTAAACCATGGTTTTGTCATGATTTGGACTGTCCAGAATTCAAAGTTGTC
CGAAAGATCACAGTCAACGATGATCTGGAAATTGAAGAGAGATGCTATCC
TGAAACAACTTGGGTTCAAACAACAATGAATGGTGACCGCCAAAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001567XLOC_001567Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002886-proteinTCONS_00002886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002886-exon-sc0000023-1575043694:712631..713033TCONS_00002886-exon-sc0000023-1575043694:712631..713033Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1575043694:711818..712139TCONS_00002886-exon-sc0000023-1575043694:711818..712139Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1575043694:710483..711347TCONS_00002886-exon-sc0000023-1575043694:710483..711347Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1510915933:712631..713033TCONS_00002886-exon-sc0000023-1510915933:712631..713033Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1510915933:711818..712139TCONS_00002886-exon-sc0000023-1510915933:711818..712139Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1510915933:710483..711347TCONS_00002886-exon-sc0000023-1510915933:710483..711347Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1491911889:712631..713033TCONS_00002886-exon-sc0000023-1491911889:712631..713033Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1491911889:711818..712139TCONS_00002886-exon-sc0000023-1491911889:711818..712139Clytia hemisphaericaexon
TCONS_00002886-exon-sc0000023-1491911889:710483..711347TCONS_00002886-exon-sc0000023-1491911889:710483..711347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:710483..713033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.36422	4.09585	3.57004	3.52872	2.38637	1.62165	13.0078	13.3593	6.07657	6.43255	17.3812	10.0077	7.53588	7.91031	3.43334	45.71	7.73042	12.4102	44.0093	40.5776	138.673	158.679	93.9229	103.877	22.0885	13.3578	108.712	95.3152	917.731	595.693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006917SOUL_haem-bd
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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