TCONS_00002884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002884
Unique NameTCONS_00002884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002884 ID=TCONS_00002884|Name=TCONS_00002884|organism=Clytia hemisphaerica|type=transcript|length=2058bp
ATAAGAATAGTACAGAATAAAGAAGCAAAAAGGGGAGAAAGAACAGTGGC
TGAAATTAAATatgttatcaaaacaaaaaagttcttGAGTAAAGAGAAGA
AGGactacattttcaaaaagtatatgaaaaactttggaaaatatATAAGA
TAGGTGAAAAAAGGATAGAAAAAATATATGCCATTATAAAACTTCTCTAA
TTAATATaaggaatttgaaataaataacATTAGCTTGAATGTGATAATCT
GCAGCGTTACGGGAGCGTTGCttagaaattttggaaaaaacaacataaat
tgCAAACACACGAATAAAATTTTATACCGATAGGACTTTGTCAATatgGC
CTCGACTTGGAAGACGCGAAAGTGAAGatATGCAGAGACTGTTTGATACA
TTCGATTGTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGT
CTTCAAAGCTTTGAATGTTACCATCAATGATGAAAATTTGAGGTCTATGT
TTCACTCCGCTGATAAAGACAAAAGTGGTTTTATTGAATTTGGTGAATTT
GTAAGAGTATTTAGTCCACCGAGTCAAGATGAGCTTTTAAATGCATTTAA
ACGATTCGATAAGAATGGGGATGGTTTTCTGACACCTGATGAGGTGAAAG
AAGTATTGAGAGATGCTAATCAGCCGGCAACCGATCGGAATGTAACAGAA
ATGATTGAATCTGTTGATTCGAATGGTGATGGAAAGATTAACTATAAAGA
ATTTCTCACGATGTTAAAATCTTAGTGTAGTGGCTACAACATTTGAAAga
ttcaaaatattatgattagaatttttgtaaatattgtcaaaatgaaataa
attatagcaaataaaaagaactttttgaacagAATTTTAAAACTTATCCT
CGTTAAGAAGGAGTTCTAATCTAAGTTACGTGATATCTCCTTCCTTTAGA
GCAGCCATGTGATTGCTCTTAAATCTATCCATGTCGAAATGTGGCGACTT
ATACATATAGCCCAAAAATAATAGAATAATTCGAATAATTATCAGGACAT
CTATCGCCGTTGCGACGATGATTTTTTCGTAACAAAAAAATGCTCAGGCG
AAGGCTTAGCTGGAAATAAAAAGagtcattttttgttttgttgaaaatcG
ATTGAAGTAATCTTTGACGTAAGGAGTACAACAGTAGTAGGCccttcaaa
attattttaagttcTAAATAGAAAGCATaattacaaacaaacaaacaaat
aaaaagaaagtaacgTAAAAAATTACCATATAATAATTCTACACAAATTA
tttaattagaaaaaaaacaacaacacaaaTAAGATTCAGAATCATACAGA
AGATTTTGGGAATAAGGTAGTACAAGTTTACTAAGAAAtagaataaaatt
gattttactaGAAACCTAACAAGTATTTCTTCGTGTCGAAACAGACGAAA
GGAAATTTCATCGGGTTATAcgaataaaaaacattttatcgtgtaaacaa
aaaaagaatgacaaatttAAGGAATTTGAGGCAAAGGCGAAGAGGAATAG
GAAATAAATACAAAACCCTAATAGACAATTTAAATTAAACGATCAAATGA
TGGCCATATAGTTATCTGCTAGAGAAGCTTAAAAATGAACCATGTTCAAT
TTCTACTTAAAAGAGGCTCCCATAATATTGAttggaaatcaaaattaatt
ttagaatGATGGCTGTCAGAGAGGACGGTAAAATATATACTTGTTTCATC
AGATtataaacagcaaaaaaattgttCCCCCATAAATCAAGtgagaacgt
caaaaatttgtTCGTTTATACCGTAAAAAAGTCACATGTGATGACGTAAT
CGAATGTCGTTTCTAATGACTATGCTAGCATCTGGTTTCGTATAAACCAC
TCTTAGAGATGTATCGGACCCACTTGATAACATCATGATCACTGTAATTC
AATTTCGATTCGAACACCTTCAAGTAGCGTACCTTCAAGCCAGAACATGA
GAAAGGGACCTACAAGAAAAAGAGATAATTGTACATTCAATGAGTGCATA
TAGAGCTC
Run BLAST on NCBI

transcript from alignment at sc0000023:672663..676113-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002884 ID=TCONS_00002884|Name=TCONS_00002884|organism=Clytia hemisphaerica|type=transcript|length=3451bp|location=Sequence derived from alignment at sc0000023:672663..676113- (Clytia hemisphaerica)
ATAAGAATAGTACAGAATAAAGAAGCAAAAAGGGGAGAAAGAACAGTGGC
TGAAATTAAATATGTTATCAAAACAAAAAAGTTCTTGAGTAAAGAGAAGA
AGGACTACATTTTCAAAAAGTATATGAAAAACTTTGGAAAATATATAAGA
TAGGTGAAAAAAGGATAGAAAAAATATATGCCATTATAAAACTTCTCTAA
TTAATATAAGGAATTTGAAATAAATAACATTAGCTTGAATGTGATAATCT
GCAGCGTTACGGGAGCGTTGCTTAGAAATTTTGGAAAAAACAACATAAAT
TGCAAACACACGAATAAAATTTTATACCGATAGGACTTTGTCAATATGGT
AAGTTTTTTTTTTCTATTTCACATCTGTGAGGAGGGGTCTGTTTAAAAAT
GGAAACAAAAGGGCAGCTGGATTTTGAAAAAAAAAATGATAGTACCGCTG
AATATTTTATCGGTACGCCGTTATTTGTCTGACTGACTGGATTTTATGCC
GGACCCGGTATTTCAAGGAGAAATTACCTGTACATTCCGGTTATTCGTAC
CCTTGGAAAGGTCCCCGCATTTGAGGATGGTATAAGAATGCAAGAATAGC
GTCTAAAATACTCTCTTTGAGTATCTGTTAGTTCAAAGAGCTTTATAAAC
CTATCCAGCAGTAAATCAAGTTTTATTTACAATTTCTAGCCTCGACTTGG
AAGACGCGAAAGTGAAGGTATTTATTTCTATCTTATCTTTTTTACTTGTT
ACTTTTGCTGCCTTCTGACTCCGTCAAATTGGAAAGTACAGTTGACGCTC
TCTAATTCGATCTTCTATTCTTCAAGTTAGAGAAAGATTCGCATTTAGAA
ATTCTCATAAACGGCGTTCTTCTAATCGGCGACACGCTCTCCTATTCCAT
CAAAATCTGATTTCCCCTGAAAATCGAAAATAAGAGAGGCGTCAATTAGA
GCACTAAAGGAAAGGTAAAGGCAAAATTGTTCGAAATATCTGTAGATACC
AGGTCTGTTCAAAAACCATACAAAAACTTTGTTGGAAATATGGCATCTAA
AATTTAATTCTTCTTTCTTAGATATGCAGAGACTGTTTGATACATTCGAT
TGTGATATGAATGGAAGGATTTCAAGAAGAGAATTGAAAGCTGTCTTCAA
AGCTTTGAATGTTACCATCAATGATGAAAATTTGAGGTCTATGTTTCACT
CCGCTGATAAAGACAGTAAGTACCCGTCGTACCCGTTGCTTTGTGCCTGT
AATTTTATATACGGAAGTAACAAAAAAGACCGGGTGTTTGACATTATAAT
ACATACATAATAAAACAATTCCAATAGCAATACGGTAAATTTGAATTCGC
AAACAGTAAAGCTAGTGGCAAATGACCGGGCTACTTTTAGTGGTTCCGTA
CAAAACATTACGCCATGAAAATCATGAACAACCTCTTGTGGAAAAAAGAG
GGTTGCATTTGTGAAGTAAAGTCAGTCATTATTTTCTCATTTTTTTCTCT
TAGAAAGTGGTTTTATTGAATTTGGTGAATTTGTAAGAGTATTTAGTCCA
CCGAGTCAAGATGAGCTTTTAAATGCATTTAAACGATTCGATAAGAATGG
GGATGGTTTTCTGACACCTGATGAGGTGAAAGAAGTATTGAGAGATGCTA
ATCAGCCGGCAACCGATCGGAATGTAACAGAAATGATTGAATCTGTTGAT
TCGAATGGTGATGGAAAGATTAACTATAAAGGTAGGTTCTTAAAATTGTA
GAATGAAAACAAAAGCTCAAAAGAAATGGGTTCCATGATTAAGGTATTCA
TATGAAGGGAATTGACCGAAACCTTTGATTTAGTTTAACCAAAGATGGTC
AATAGTATAGGTTACTGCGACAACCCAAGTAGATTTTAATATTTTCATCT
TTAAGGAAAAGTTCCCCTTTATATGATTGTATACCATAGAATATGATGGG
AAGCAAAATCTTGTTCTCTGTCACCCGTTGTTCTGCTAAGCAGGAATACT
CTGTTCTGGTGTGAAAATGTAACCGACAATAAATAGAAAAGTAATTATGA
AAAATGATAATATTGGACCCCTGATGTATAGAGCTCTTATCGCATAACTG
AAAGCGTCGTCTTTAATATTTTCCTTTTTCTTTTTTCTACAGAATTTCTC
ACGATGTTAAAATCTTAGTGTAGTGGCTACAACATTTGAAAGATTCAAAA
TATTATGATTAGAATTTTTGTAAATATTGTCAAAATGAAATAAATTATAG
CAAATAAAAAGAACTTTTTGAACAGAATTTTAAAACTTATCCTCGTTAAG
AAGGAGTTCTAATCTAAGTTACGTGATATCTCCTTCCTTTAGAGCAGCCA
TGTGATTGCTCTTAAATCTATCCATGTCGAAATGTGGCGACTTATACATA
TAGCCCAAAAATAATAGAATAATTCGAATAATTATCAGGACATCTATCGC
CGTTGCGACGATGATTTTTTCGTAACAAAAAAATGCTCAGGCGAAGGCTT
AGCTGGAAATAAAAAGAGTCATTTTTTGTTTTGTTGAAAATCGATTGAAG
TAATCTTTGACGTAAGGAGTACAACAGTAGTAGGCCCTTCAAAATTATTT
TAAGTTCTAAATAGAAAGCATAATTACAAACAAACAAACAAATAAAAAGA
AAGTAACGTAAAAAATTACCATATAATAATTCTACACAAATTATTTAATT
AGAAAAAAAACAACAACACAAATAAGATTCAGAATCATACAGAAGATTTT
GGGAATAAGGTAGTACAAGTTTACTAAGAAATAGAATAAAATTGATTTTA
CTAGAAACCTAACAAGTATTTCTTCGTGTCGAAACAGACGAAAGGAAATT
TCATCGGGTTATACGAATAAAAAACATTTTATCGTGTAAACAAAAAAAGA
ATGACAAATTTAAGGAATTTGAGGCAAAGGCGAAGAGGAATAGGAAATAA
ATACAAAACCCTAATAGACAATTTAAATTAAACGATCAAATGATGGCCAT
ATAGTTATCTGCTAGAGAAGCTTAAAAATGAACCATGTTCAATTTCTACT
TAAAAGAGGCTCCCATAATATTGATTGGAAATCAAAATTAATTTTAGAAT
GATGGCTGTCAGAGAGGACGGTAAAATATATACTTGTTTCATCAGATTAT
AAACAGCAAAAAAATTGTTCCCCCATAAATCAAGTGAGAACGTCAAAAAT
TTGTTCGTTTATACCGTAAAAAAGTCACATGTGATGACGTAATCGAATGT
CGTTTCTAATGACTATGCTAGCATCTGGTTTCGTATAAACCACTCTTAGA
GATGTATCGGACCCACTTGATAACATCATGATCACTGTAATTCAATTTCG
ATTCGAACACCTTCAAGTAGCGTACCTTCAAGCCAGAACATGAGAAAGGG
ACCTACAAGAAAAAGAGATAATTGTACATTCAATGAGTGCATATAGAGCT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001566XLOC_001566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002884-exon-sc0000023-1575043694:675766..676113TCONS_00002884-exon-sc0000023-1575043694:675766..676113Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1575043694:675397..675425TCONS_00002884-exon-sc0000023-1575043694:675397..675425Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1575043694:674899..675042TCONS_00002884-exon-sc0000023-1575043694:674899..675042Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1575043694:674383..674610TCONS_00002884-exon-sc0000023-1575043694:674383..674610Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1575043694:672663..673971TCONS_00002884-exon-sc0000023-1575043694:672663..673971Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1510915933:675766..676113TCONS_00002884-exon-sc0000023-1510915933:675766..676113Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1510915933:675397..675425TCONS_00002884-exon-sc0000023-1510915933:675397..675425Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1510915933:674899..675042TCONS_00002884-exon-sc0000023-1510915933:674899..675042Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1510915933:674383..674610TCONS_00002884-exon-sc0000023-1510915933:674383..674610Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1510915933:672663..673971TCONS_00002884-exon-sc0000023-1510915933:672663..673971Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1491911889:675766..676113TCONS_00002884-exon-sc0000023-1491911889:675766..676113Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1491911889:675397..675425TCONS_00002884-exon-sc0000023-1491911889:675397..675425Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1491911889:674899..675042TCONS_00002884-exon-sc0000023-1491911889:674899..675042Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1491911889:674383..674610TCONS_00002884-exon-sc0000023-1491911889:674383..674610Clytia hemisphaericaexon
TCONS_00002884-exon-sc0000023-1491911889:672663..673971TCONS_00002884-exon-sc0000023-1491911889:672663..673971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:672663..676113 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0101623	0	0.0431959	0	0	0	0	0	0	0	0	0.0223004	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0112987
Blast
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BLAST of TCONS_00002884 vs. Swiss-Prot (Human)
Match: TNNC2 (Troponin C, skeletal muscle OS=Homo sapiens GN=TNNC2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 7.705e-21
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 2 
Query:  326 TDRTLSIWPRLGRRESEDMQRLFDTFDCDMNGRISRRELKAVFKALNVTINDENLRSMFHSADKDKSGFIEFGEFVRVF--------SPPSQDELLNAFKRFDKNGDGFLTPDEVKEVLRDANQPATDRNVTEMIESVDSNGDGKINYKEFLTMLKS 772
            TD+       L      + +  FD FD D  G IS +EL  V + L  T   E L ++    D+D SG I+F EF+ +            S++EL   F+ FD+N DG++ P+E+ E+ R + +  TD  +  +++  D N DG+I++ EFL M++ 
Sbjct:    2 TDQQAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQTPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELAECFRIFDRNADGYIDPEELAEIFRASGEHVTDEEIESLMKDGDKNNDGRIDFDEFLKMMEG 158
The following BLAST results are available for this feature:
BLAST of TCONS_00002884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TNNC27.705e-2131.85Troponin C, skeletal muscle OS=Homo sapiens GN=TNN... [more]
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